CN188395

Overview
NameCN188395
Unique NameCN188395
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length714
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1631 contig Csv1_Contig1631:95..808. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188395 vs. ExPASy Swiss-Prot
Match: TPC6B_MOUSE (Trafficking protein particle complex subunit 6B OS=Mus musculus GN=Trappc6b PE=2 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.671e-30
Identity = 64/137 (46.72%), Postives = 93/137 (67.88%), Query Frame = 3
Query:   54 RIEAIGYQVGHQLSERYTMERPRFSDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLSRISTDPSVENTESQDPSAAAESKASLATMHVYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIK 464
            ++E++G++VG  L ER+T +  RF D L+ +KFICKDFW+ +FKKQIDNL+TNH+G +VLQDN+FR L ++S               A +     A+ ++ F CG+IRG LSNLGI   V+A++S++PAC F V I+
Sbjct:   35 KLESMGFRVGQGLIERFTKDTARFKDELDIMKFICKDFWTTVFKKQIDNLRTNHQGIYVLQDNKFRLLIQLS---------------AGKQYLEHASKYLAFTCGLIRGGLSNLGIKSIVTAEVSSMPACKFQVMIQ 156          
BLAST of CN188395 vs. ExPASy Swiss-Prot
Match: TPC6B_HUMAN (Trafficking protein particle complex subunit 6B OS=Homo sapiens GN=TRAPPC6B PE=1 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.182e-30
Identity = 64/137 (46.72%), Postives = 93/137 (67.88%), Query Frame = 3
Query:   54 RIEAIGYQVGHQLSERYTMERPRFSDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLSRISTDPSVENTESQDPSAAAESKASLATMHVYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIK 464
            ++E +G++VG  L ER+T +  RF D L+ +KFICKDFW+ +FKKQIDNL+TNH+G +VLQDN+FR L+++S               A +     A+ ++ F CG+IRG LSNLGI   V+A++S++PAC F V I+
Sbjct:   35 KLENMGFRVGQGLIERFTKDTARFKDELDIMKFICKDFWTTVFKKQIDNLRTNHQGIYVLQDNKFRLLTQMS---------------AGKQYLEHASKYLAFTCGLIRGGLSNLGIKSIVTAEVSSMPACKFQVMIQ 156          
BLAST of CN188395 vs. ExPASy Swiss-Prot
Match: TPC6B_BOVIN (Trafficking protein particle complex subunit 6B OS=Bos taurus GN=TRAPPC6B PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.182e-30
Identity = 64/137 (46.72%), Postives = 93/137 (67.88%), Query Frame = 3
Query:   54 RIEAIGYQVGHQLSERYTMERPRFSDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLSRISTDPSVENTESQDPSAAAESKASLATMHVYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIK 464
            ++E +G++VG  L ER+T +  RF D L+ +KFICKDFW+ +FKKQIDNL+TNH+G +VLQDN+FR L+++S               A +     A+ ++ F CG+IRG LSNLGI   V+A++S++PAC F V I+
Sbjct:   35 KLENMGFRVGQGLIERFTKDTARFKDELDIMKFICKDFWTTVFKKQIDNLRTNHQGIYVLQDNKFRLLTQMS---------------AGKQYLEHASKYLAFTCGLIRGGLSNLGIKSIVTAEVSSMPACKFQVMIQ 156          
BLAST of CN188395 vs. ExPASy Swiss-Prot
Match: TPC6A_MOUSE (Trafficking protein particle complex subunit 6A OS=Mus musculus GN=Trappc6a PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.756e-23
Identity = 55/136 (40.44%), Postives = 80/136 (58.82%), Query Frame = 3
Query:   57 IEAIGYQVGHQLSERYTMERPRFSDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLSRISTDPSVENTESQDPSAAAESKASLATMHVYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIK 464
            +E +G++VG  L ER  +E P F + L+A+KF+C+D W+ +F+K +D L+TNH+GT+VLQDN F  L           T    P    E+   LA     F CG++ GAL  LG    V+A +++LPAC F V I+
Sbjct:   37 LEGLGFRVGQALGERLPLETPAFREELDALKFLCRDLWAAMFQKHMDGLRTNHQGTYVLQDNSFPLLV----------TMGSGPQYLEEAPKFLA-----FTCGLLCGALHTLGFQSLVTASVASLPACKFQVVIQ 157          
BLAST of CN188395 vs. ExPASy Swiss-Prot
Match: TPC6A_BOVIN (Trafficking protein particle complex subunit 6A OS=Bos taurus GN=TRAPPC6A PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.364e-22
Identity = 54/136 (39.71%), Postives = 78/136 (57.35%), Query Frame = 3
Query:   57 IEAIGYQVGHQLSERYTMERPRFSDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLSRISTDPSVENTESQDPSAAAESKASLATMHVYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRIK 464
            +E +G++VG  L ER   E   F + L+ +KF+CKD W  +F KQ+D+L+TNH+GT+VLQDN F  L R+               A+       A   + F CG++RG LS LG+   V+A ++ LPAC F V I+
Sbjct:   37 LEGMGFRVGQALGERLPRETLTFREELDILKFLCKDLWVAVFHKQMDSLRTNHQGTYVLQDNSFPLLVRM---------------ASGLQYLEEAPKFLAFTCGLLRGTLSTLGVKSLVTASVAALPACKFQVVIQ 157          
BLAST of CN188395 vs. ExPASy Swiss-Prot
Match: TPC6A_HUMAN (Trafficking protein particle complex subunit 6A OS=Homo sapiens GN=TRAPPC6A PE=1 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 1.086e-21
Identity = 54/135 (40.00%), Postives = 76/135 (56.30%), Query Frame = 3
Query:   57 IEAIGYQVGHQLSERYTMERPRFSDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLSRISTDPSVENTESQDPSAAAESKASLATMHVYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVRI 461
            +E +G++VG  L ER   E   F + L+ +KF+CKD W  +F+KQ+D+L+TNH+GT+VLQDN F  L                P A+       A   + F CG++RGAL  LGI   V+A ++ LP C F V I
Sbjct:   37 LEGMGFRVGQALGERLPRETLAFREELDVLKFLCKDLWVAVFQKQMDSLRTNHQGTYVLQDNSFPLLL---------------PMASGLQYLEEAPKFLAFTCGLLRGALYTLGIESVVTASVAALPVCKFQVVI 156          
BLAST of CN188395 vs. ExPASy Swiss-Prot
Match: YA95_SCHPO (Uncharacterized protein C13G6.05c OS=Schizosaccharomyces pombe GN=SPAC13G6.05c PE=1 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 7.036e-21
Identity = 48/134 (35.82%), Postives = 74/134 (55.22%), Query Frame = 3
Query:   57 IEAIGYQVGHQLSERYTMERPRFSDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLSRISTDPSVENTESQDPSAAAESKASLATMHVYFPCGIIRGALSNLGIPCAVSADISNLPACSFVVR 458
            +E+IG+QVG +++ER  + R R ++  + ++F+C++ W  +F+K +DNLKTN RG FVL D  F W ++++     E              A + T + YFP G IRG +   G    V A   NLP C F V+
Sbjct:   43 LESIGFQVGRKITERLLLNRNRITETTDVMRFLCRELWPIVFRKPLDNLKTNRRGIFVLTDTYFYWFTKMTAMTGTE-------------MAQITTPYFYFPSGFIRGVVYTFGYSAQVIAQCPNLPTCIFHVK 163          
BLAST of CN188395 vs. ExPASy Swiss-Prot
Match: TRS33_YEAST (Transport protein particle 33 kDa subunit OS=Saccharomyces cerevisiae GN=TRS33 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.679e-14
Identity = 47/120 (39.17%), Postives = 63/120 (52.50%), Query Frame = 3
Query:   54 RIEAIGYQVGHQLSERYTMERP-----RFSDHLEAIKFICKDFWSELFKKQIDNLKTNHRGTFVLQDNRFRWLSRISTDPSVENTESQDPSAAAESKASLATMHVYFPCGIIRGALSNLG 398
            R+  IG+Q+G +LSE            +  D L  +KFIC+D W ++F KQIDNLKTNHRGTF L D  +R +   S +   +N E             +    +  P GIIRG LS+LG
Sbjct:  122 RLRNIGFQIGLKLSELLIFSNNPNLKFKEMDLLLIMKFICRDVWKQIFGKQIDNLKTNHRGTFYLLDYDYRPIQSFSLEEDAKNEE-----------LKMIEPFLEIPVGIIRGVLSSLG 230          
The following BLAST results are available for this feature:
BLAST of CN188395 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
TPC6B_MOUSE1.671e-3046.72Trafficking protein particle complex subunit 6B OS... [more]
TPC6B_HUMAN2.182e-3046.72Trafficking protein particle complex subunit 6B OS... [more]
TPC6B_BOVIN2.182e-3046.72Trafficking protein particle complex subunit 6B OS... [more]
TPC6A_MOUSE5.756e-2340.44Trafficking protein particle complex subunit 6A OS... [more]
TPC6A_BOVIN6.364e-2239.71Trafficking protein particle complex subunit 6A OS... [more]
TPC6A_HUMAN1.086e-2140.00Trafficking protein particle complex subunit 6A OS... [more]
YA95_SCHPO7.036e-2135.82Uncharacterized protein C13G6.05c OS=Schizosacchar... [more]
TRS33_YEAST1.679e-1439.17Transport protein particle 33 kDa subunit OS=Sacch... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0005P13_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005P13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188395 ID=CN188395; Name=CN188395; organism=Citrus sinensis; type=EST; length=714bp
AGTCCACGTATAACAATCGTTTCTACGCCAACAAGCCAGACCTTGCAGCC
CGGCGGATCGAGGCGATTGGTTATCAGGTCGGTCACCAGCTTTCCGAACG
GTATACAATGGAGAGGCCACGCTTTAGTGATCATCTAGAGGCGATAAAGT
TCATCTGCAAGGACTTTTGGTCTGAGCTCTTCAAGAAGCAGATAGACAAC
TTGAAGACGAACCATAGAGGTACCTTTGTATTGCAAGACAATCGGTTTCG
ATGGCTTTCACGTATCTCGACTGATCCATCAGTCGAAAATACTGAATCTC
AAGATCCTTCTGCTGCAGCTGAAAGCAAGGCATCCCTAGCAACCATGCAC
GTGTACTTCCCCTGTGGAATTATAAGGGGAGCTCTCTCAAACTTGGGGAT
TCCTTGTGCGGTTTCGGCCGACATATCCAATCTTCCTGCATGTTCATTTG
TGGTCCGTATAAAGGCCTGATAAGCATTTTGGCAGACTGTGATTAAGAAT
GGGGTTGAAGCATATGGCTAGTTTTGACAGATCTGTACTGGAAAACTATT
AATGCCCTATTGTTGAAAATACCGAAAGTACCATATGAGCGCTTGGGATG
AACTCCTGTTGCTTTGTAGATTTCAGATTATGGATACAGATACTTTGAAA
TTGTGATAAGTGATTACTGAAGAGCCATTTTCTTGGTCCTCTCTTANCAT
CCATTGTAAAAGCA
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