CN188390
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CN188390 vs. ExPASy Swiss-Prot
Match: H1_SOLPN (Histone H1 OS=Solanum pennellii PE=2 SV=1) HSP 1 Score: 119.783 bits (299), Expect = 1.116e-26 Identity = 58/78 (74.36%), Postives = 66/78 (84.62%), Query Frame = -1 Query: 383 KPKQSKTPCHLPYFQMITEALMALQDKSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIRAFYKLS 616 KPK +K H PYFQMI EAL+AL +K GSSPYA+AKYME+KHKDELPANFRKIL +QLK+ AAKG LIKI+A YKLS Sbjct: 40 KPKSAKAVTHPPYFQMIKEALLALNEKGGSSPYAVAKYMEDKHKDELPANFRKILGLQLKNSAAKGKLIKIKASYKLS 117
BLAST of CN188390 vs. ExPASy Swiss-Prot
Match: H1_MAIZE (Histone H1 OS=Zea mays PE=2 SV=2) HSP 1 Score: 92.8189 bits (229), Expect = 1.461e-18 Identity = 42/77 (54.55%), Postives = 60/77 (77.92%), Query Frame = -1 Query: 383 PKQSKTPCHLPYFQMITEALMALQDKSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIRAFYKLS 613 PK+ +P HLPY +M++EA+ +L++++GSS YAIAK++E+KHK +LP NFRK+L VQLK A G L K++ YKLS Sbjct: 42 PKKRASPTHLPYAEMVSEAITSLKERTGSSSYAIAKFVEDKHKAKLPPNFRKLLNVQLKKLVAGGKLTKVKNSYKLS 118
BLAST of CN188390 vs. ExPASy Swiss-Prot
Match: H1_WHEAT (Histone H1 OS=Triticum aestivum PE=2 SV=2) HSP 1 Score: 83.5741 bits (205), Expect = 8.864e-16 Identity = 40/78 (51.28%), Postives = 56/78 (71.79%), Query Frame = -1 Query: 383 PKQSK-TPCHLPYFQMITEALMALQDKSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIRAFYKLS 613 PK+ + TP H Y +M++EA+ AL+++SGSS AI K++E+KHK LPANFRKIL Q+K A G L K++ YKL+ Sbjct: 46 PKKPRVTPAHPSYAEMVSEAIAALKERSGSSTIAIGKFIEDKHKAHLPANFRKILLTQIKKLVAAGKLTKVKGSYKLA 123
BLAST of CN188390 vs. ExPASy Swiss-Prot
Match: H1_SOLLC (Histone H1 OS=Solanum lycopersicum PE=3 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 3.368e-15 Identity = 38/75 (50.67%), Postives = 56/75 (74.67%), Query Frame = -1 Query: 386 KQSKTPCHLPYFQMITEALMALQDKSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIRAFYKL 610 K+S TP H PYF+MI +A++ L++++GSS +AI K++EEK K LP+NF+K+L QLK F A L+K++ YKL Sbjct: 49 KRSATPTHPPYFEMIKDAIVTLKERTGSSQHAITKFIEEKQK-SLPSNFKKLLLTQLKKFVASEKLVKVKNSYKL 122
BLAST of CN188390 vs. ExPASy Swiss-Prot
Match: H1_EUPES (Histone H1 OS=Euphorbia esula PE=2 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 3.724e-14 Identity = 36/77 (46.75%), Postives = 55/77 (71.43%), Query Frame = -1 Query: 386 KPKQSKTPCHLPYFQMITEALMALQDKSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIRAFYKL 616 KPK T H +F+MI++A+ L++++GSS YAI K++E+KHK +LP+NFRK+L LK A G L+K++ +KL Sbjct: 42 KPKSKGTSSHPSFFEMISDAISTLKERTGSSQYAINKFVEDKHK-QLPSNFRKLLLFHLKKLVASGKLVKVKNSFKL 117
BLAST of CN188390 vs. ExPASy Swiss-Prot
Match: H1_PEA (Histone H1 OS=Pisum sativum PE=2 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 1.848e-13 Identity = 40/82 (48.78%), Postives = 58/82 (70.73%), Query Frame = -1 Query: 383 KPKQSKTP----CHLPYFQMITEALMALQDKSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIRAFYKLS 616 KPK++ P H Y +MI +A+++L++K+GSS YAIAK++EEK K +LPANF+K+L LK A G LIK++ +KLS Sbjct: 49 KPKKASKPRNPASHPTYEEMIKDAIVSLKEKNGSSQYAIAKFIEEKQK-QLPANFKKLLLQNLKKNVASGKLIKVKGSFKLS 129
BLAST of CN188390 vs. ExPASy Swiss-Prot
Match: H11_ARATH (Histone H1.1 OS=Arabidopsis thaliana GN=At1g06760 PE=2 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 1.565e-12 Identity = 35/76 (46.05%), Postives = 52/76 (68.42%), Query Frame = -1 Query: 386 PKQSKTPCHLPYFQMITEALMALQDKSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIRAFYKL 613 PK+ H Y +MI +A++ L++++GSS YAI K++EEK K ELP FRK+L + LK A G L+K++A +KL Sbjct: 54 PKKRTVSSHPTYEEMIKDAIVTLKERTGSSQYAIQKFIEEKRK-ELPPTFRKLLLLNLKRLVASGKLVKVKASFKL 128
BLAST of CN188390 vs. ExPASy Swiss-Prot
Match: H12_ARATH (Histone H1.2 OS=Arabidopsis thaliana GN=At2g30620 PE=1 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 5.945e-12 Identity = 34/75 (45.33%), Postives = 51/75 (68.00%), Query Frame = -1 Query: 386 KQSKTPCHLPYFQMITEALMALQDKSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIRAFYKL 610 K+ T H Y +MI +A++ L++++GSS YAI K++EEKHK LP FRK+L V LK A L+K++A +K+ Sbjct: 55 KKKTTSSHPTYEEMIKDAIVTLKERTGSSQYAIQKFIEEKHK-SLPPTFRKLLLVNLKRLVASEKLVKVKASFKI 128 The following BLAST results are available for this feature:
BLAST of CN188390 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 8
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CN188390 ID=CN188390; Name=CN188390; organism=Citrus sinensis; type=EST; length=616bpback to top |