CN188390

Overview
NameCN188390
Unique NameCN188390
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length616
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9760 contig Csv1_Contig9760:225..838. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188390 vs. ExPASy Swiss-Prot
Match: H1_SOLPN (Histone H1 OS=Solanum pennellii PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.116e-26
Identity = 58/78 (74.36%), Postives = 66/78 (84.62%), Query Frame = -1
Query:  383 KPKQSKTPCHLPYFQMITEALMALQDKSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIRAFYKLS 616
            KPK +K   H PYFQMI EAL+AL +K GSSPYA+AKYME+KHKDELPANFRKIL +QLK+ AAKG LIKI+A YKLS
Sbjct:   40 KPKSAKAVTHPPYFQMIKEALLALNEKGGSSPYAVAKYMEDKHKDELPANFRKILGLQLKNSAAKGKLIKIKASYKLS 117          
BLAST of CN188390 vs. ExPASy Swiss-Prot
Match: H1_MAIZE (Histone H1 OS=Zea mays PE=2 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 1.461e-18
Identity = 42/77 (54.55%), Postives = 60/77 (77.92%), Query Frame = -1
Query:  383 PKQSKTPCHLPYFQMITEALMALQDKSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIRAFYKLS 613
            PK+  +P HLPY +M++EA+ +L++++GSS YAIAK++E+KHK +LP NFRK+L VQLK   A G L K++  YKLS
Sbjct:   42 PKKRASPTHLPYAEMVSEAITSLKERTGSSSYAIAKFVEDKHKAKLPPNFRKLLNVQLKKLVAGGKLTKVKNSYKLS 118          
BLAST of CN188390 vs. ExPASy Swiss-Prot
Match: H1_WHEAT (Histone H1 OS=Triticum aestivum PE=2 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 8.864e-16
Identity = 40/78 (51.28%), Postives = 56/78 (71.79%), Query Frame = -1
Query:  383 PKQSK-TPCHLPYFQMITEALMALQDKSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIRAFYKLS 613
            PK+ + TP H  Y +M++EA+ AL+++SGSS  AI K++E+KHK  LPANFRKIL  Q+K   A G L K++  YKL+
Sbjct:   46 PKKPRVTPAHPSYAEMVSEAIAALKERSGSSTIAIGKFIEDKHKAHLPANFRKILLTQIKKLVAAGKLTKVKGSYKLA 123          
BLAST of CN188390 vs. ExPASy Swiss-Prot
Match: H1_SOLLC (Histone H1 OS=Solanum lycopersicum PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.368e-15
Identity = 38/75 (50.67%), Postives = 56/75 (74.67%), Query Frame = -1
Query:  386 KQSKTPCHLPYFQMITEALMALQDKSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIRAFYKL 610
            K+S TP H PYF+MI +A++ L++++GSS +AI K++EEK K  LP+NF+K+L  QLK F A   L+K++  YKL
Sbjct:   49 KRSATPTHPPYFEMIKDAIVTLKERTGSSQHAITKFIEEKQK-SLPSNFKKLLLTQLKKFVASEKLVKVKNSYKL 122          
BLAST of CN188390 vs. ExPASy Swiss-Prot
Match: H1_EUPES (Histone H1 OS=Euphorbia esula PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.724e-14
Identity = 36/77 (46.75%), Postives = 55/77 (71.43%), Query Frame = -1
Query:  386 KPKQSKTPCHLPYFQMITEALMALQDKSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIRAFYKL 616
            KPK   T  H  +F+MI++A+  L++++GSS YAI K++E+KHK +LP+NFRK+L   LK   A G L+K++  +KL
Sbjct:   42 KPKSKGTSSHPSFFEMISDAISTLKERTGSSQYAINKFVEDKHK-QLPSNFRKLLLFHLKKLVASGKLVKVKNSFKL 117          
BLAST of CN188390 vs. ExPASy Swiss-Prot
Match: H1_PEA (Histone H1 OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 1.848e-13
Identity = 40/82 (48.78%), Postives = 58/82 (70.73%), Query Frame = -1
Query:  383 KPKQSKTP----CHLPYFQMITEALMALQDKSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIRAFYKLS 616
            KPK++  P     H  Y +MI +A+++L++K+GSS YAIAK++EEK K +LPANF+K+L   LK   A G LIK++  +KLS
Sbjct:   49 KPKKASKPRNPASHPTYEEMIKDAIVSLKEKNGSSQYAIAKFIEEKQK-QLPANFKKLLLQNLKKNVASGKLIKVKGSFKLS 129          
BLAST of CN188390 vs. ExPASy Swiss-Prot
Match: H11_ARATH (Histone H1.1 OS=Arabidopsis thaliana GN=At1g06760 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.565e-12
Identity = 35/76 (46.05%), Postives = 52/76 (68.42%), Query Frame = -1
Query:  386 PKQSKTPCHLPYFQMITEALMALQDKSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIRAFYKL 613
            PK+     H  Y +MI +A++ L++++GSS YAI K++EEK K ELP  FRK+L + LK   A G L+K++A +KL
Sbjct:   54 PKKRTVSSHPTYEEMIKDAIVTLKERTGSSQYAIQKFIEEKRK-ELPPTFRKLLLLNLKRLVASGKLVKVKASFKL 128          
BLAST of CN188390 vs. ExPASy Swiss-Prot
Match: H12_ARATH (Histone H1.2 OS=Arabidopsis thaliana GN=At2g30620 PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.945e-12
Identity = 34/75 (45.33%), Postives = 51/75 (68.00%), Query Frame = -1
Query:  386 KQSKTPCHLPYFQMITEALMALQDKSGSSPYAIAKYMEEKHKDELPANFRKILAVQLKHFAAKGNLIKIRAFYKL 610
            K+  T  H  Y +MI +A++ L++++GSS YAI K++EEKHK  LP  FRK+L V LK   A   L+K++A +K+
Sbjct:   55 KKKTTSSHPTYEEMIKDAIVTLKERTGSSQYAIQKFIEEKHK-SLPPTFRKLLLVNLKRLVASEKLVKVKASFKI 128          
The following BLAST results are available for this feature:
BLAST of CN188390 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
H1_SOLPN1.116e-2674.36Histone H1 OS=Solanum pennellii PE=2 SV=1[more]
H1_MAIZE1.461e-1854.55Histone H1 OS=Zea mays PE=2 SV=2[more]
H1_WHEAT8.864e-1651.28Histone H1 OS=Triticum aestivum PE=2 SV=2[more]
H1_SOLLC3.368e-1550.67Histone H1 OS=Solanum lycopersicum PE=3 SV=1[more]
H1_EUPES3.724e-1446.75Histone H1 OS=Euphorbia esula PE=2 SV=1[more]
H1_PEA1.848e-1348.78Histone H1 OS=Pisum sativum PE=2 SV=1[more]
H11_ARATH1.565e-1246.05Histone H1.1 OS=Arabidopsis thaliana GN=At1g06760 ... [more]
H12_ARATH5.945e-1245.33Histone H1.2 OS=Arabidopsis thaliana GN=At2g30620 ... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0005P10_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005P10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188390 ID=CN188390; Name=CN188390; organism=Citrus sinensis; type=EST; length=616bp
TTTTTTTTTTTTTTTTTAACCAAACCAAAAGTCGGGAGATCCCTTTTAAG
GTTTATGCAAAANAAGATCATACCGGGAGTTCCCTTGAAAGTGATACTTC
TTATCAGACAAGGAAGTTGAAACTAGTTTGTACTTTACTAGTATTATATC
ATTTTTCTTAAAAATGAGCAGTAGCTTTCTTGGCTTTCTTAGCAGCAGAG
GACTTGATGGATTTGGGCTGCTTTGGTTTGGCAGCAGCCGATTTCTTTGC
CTTCTTAGGCGGAGGAGGAGCGGCGGCGGCAGACTCTGCTTTGATTTTAG
CTGCAGCAGTTACGGACCTTGTTTTCCTTGGGGCCTTGGCCTTGGTCTTG
ATCTCTTTTTTGGTTTTGCCAGCTGCCGCTTCAGAGAGCTTGTAAAAGGC
CCTGATCTTGATGAGATTTCCTTTCGCAGCGAAGTGCTTCAGCTGCACTG
CCAATATTTTCCTGAAATTCGCTGGGAGCTCATCTTTGTGCTTCTCTTCC
ATGTACTTGGCTATTGCGTATGGGCTTGAACCGCTCTTATCTTGCAGCGC
CATCAGTGCCTCCGTTATCATCTGAAAATAAGGAAGATGACAGGGGGTTT
TGGACTGCTTTGGCTT
back to top