CN188387

Overview
NameCN188387
Unique NameCN188387
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length344
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1825 contig Csv1_Contig1825:346..689. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN188387 vs. ExPASy Swiss-Prot
Match: RS23_FRAAN (40S ribosomal protein S23 OS=Fragaria ananassa GN=RPS23 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.137e-27
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = -2 
Query:  167 VPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 343
            VPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
Sbjct:   84 VPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 142
[Close]
BLAST of CN188387 vs. ExPASy Swiss-Prot
Match: RS23_EUPES (40S ribosomal protein S23 OS=Euphorbia esula GN=RPS23 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 1.137e-27
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = -2 
Query:  167 VPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 343
            VPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
Sbjct:   84 VPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 142
[Close]
BLAST of CN188387 vs. ExPASy Swiss-Prot
Match: RS232_ARATH (40S ribosomal protein S23-2 OS=Arabidopsis thaliana GN=RPS23B PE=2 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 1.137e-27
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = -2 
Query:  167 VPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 343
            VPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
Sbjct:   84 VPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 142
[Close]
BLAST of CN188387 vs. ExPASy Swiss-Prot
Match: RS231_ARATH (40S ribosomal protein S23-1 OS=Arabidopsis thaliana GN=RPS23A PE=2 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 1.137e-27
Identity = 59/59 (100.00%), Postives = 59/59 (100.00%), Query Frame = -2 
Query:  167 VPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 343
            VPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
Sbjct:   84 VPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 142
[Close]
BLAST of CN188387 vs. ExPASy Swiss-Prot
Match: RS23_DERVA (40S ribosomal protein S23 OS=Dermacentor variabilis GN=RpS23 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.044e-25
Identity = 53/59 (89.83%), Postives = 57/59 (96.61%), Query Frame = -2 
Query:  167 VPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 343
            VP DGCLNYIEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KEKKE+PRS
Sbjct:   85 VPRDGCLNYIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 143
[Close]
BLAST of CN188387 vs. ExPASy Swiss-Prot
Match: RS23_SPOFR (40S ribosomal protein S23 OS=Spodoptera frugiperda GN=RpS23 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.537e-24
Identity = 52/59 (88.14%), Postives = 57/59 (96.61%), Query Frame = -2 
Query:  167 VPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 343
            VP DGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KEKKE+PRS
Sbjct:   85 VPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 143
[Close]
BLAST of CN188387 vs. ExPASy Swiss-Prot
Match: RS23_RAT (40S ribosomal protein S23 OS=Rattus norvegicus GN=Rps23 PE=2 SV=3)

HSP 1 Score: 111.309 bits (277), Expect = 1.537e-24
Identity = 52/59 (88.14%), Postives = 57/59 (96.61%), Query Frame = -2 
Query:  167 VPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 343
            VPNDGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+K KKE+PRS
Sbjct:   85 VPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS 143
[Close]
BLAST of CN188387 vs. ExPASy Swiss-Prot
Match: RS23_PIG (40S ribosomal protein S23 OS=Sus scrofa GN=RPS23 PE=2 SV=3)

HSP 1 Score: 111.309 bits (277), Expect = 1.537e-24
Identity = 52/59 (88.14%), Postives = 57/59 (96.61%), Query Frame = -2 
Query:  167 VPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 343
            VPNDGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+K KKE+PRS
Sbjct:   85 VPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS 143
[Close]
BLAST of CN188387 vs. ExPASy Swiss-Prot
Match: RS23_PAPDA (40S ribosomal protein S23 OS=Papilio dardanus GN=RpS23 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 1.537e-24
Identity = 52/59 (88.14%), Postives = 57/59 (96.61%), Query Frame = -2 
Query:  167 VPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 343
            VP DGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+KEKKE+PRS
Sbjct:   85 VPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKEKKERPRS 143
[Close]
BLAST of CN188387 vs. ExPASy Swiss-Prot
Match: RS23_MOUSE (40S ribosomal protein S23 OS=Mus musculus GN=Rps23 PE=2 SV=3)

HSP 1 Score: 111.309 bits (277), Expect = 1.537e-24
Identity = 52/59 (88.14%), Postives = 57/59 (96.61%), Query Frame = -2 
Query:  167 VPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 343
            VPNDGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+K KKE+PRS
Sbjct:   85 VPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS 143
The following BLAST results are available for this feature:
BLAST of CN188387 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
RS23_FRAAN1.137e-27100.0040S ribosomal protein S23 OS=Fragaria ananassa GN=... [more]
RS23_EUPES1.137e-27100.0040S ribosomal protein S23 OS=Euphorbia esula GN=RP... [more]
RS232_ARATH1.137e-27100.0040S ribosomal protein S23-2 OS=Arabidopsis thalian... [more]
RS231_ARATH1.137e-27100.0040S ribosomal protein S23-1 OS=Arabidopsis thalian... [more]
RS23_DERVA4.044e-2589.8340S ribosomal protein S23 OS=Dermacentor variabili... [more]
RS23_SPOFR1.537e-2488.1440S ribosomal protein S23 OS=Spodoptera frugiperda... [more]
RS23_RAT1.537e-2488.1440S ribosomal protein S23 OS=Rattus norvegicus GN=... [more]
RS23_PIG1.537e-2488.1440S ribosomal protein S23 OS=Sus scrofa GN=RPS23 P... [more]
RS23_PAPDA1.537e-2488.1440S ribosomal protein S23 OS=Papilio dardanus GN=R... [more]
RS23_MOUSE1.537e-2488.1440S ribosomal protein S23 OS=Mus musculus GN=Rps23... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005P08_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005P08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188387 ID=CN188387; Name=CN188387; organism=Citrus sinensis; type=EST; length=344bp
TTTTGAGACACATATTAATTTACTAATAGTCTCAACAGAGGGAAAAAAAC
CAAAAAGTTCTCTCAACAGCAGTACATGATAAAGGAAAACAGTAATCAAC
GGGGATTAATGAAAATAAAGTGCTAAAAAAAGAAAACATGGTGAAGTATC
TTGAATCAGGAGTTTAGGATCTTGGTTTCTCCTTCTTCTCCTTGAAGAGG
GCCAGAAGAGACACGCCTGAAACCTTGACAACCTTAAATCTAACACCAGG
AATATCTCCCACAGCATGCCCCTTTCGACCAAATCCTGCAATAAGTACCT
CGTCATTTTCTTCAATGTAGTTCAAACAACCATCGTTTGGTACG
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