CN188385

Overview
NameCN188385
Unique NameCN188385
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length712
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1828 contig Csv1_Contig1828:355..1066. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CN188385 vs. ExPASy Swiss-Prot
Match: TSJT1_TOBAC (Stem-specific protein TSJT1 OS=Nicotiana tabacum GN=TSJT1 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.285e-14
Identity = 35/62 (56.45%), Postives = 47/62 (75.81%), Query Frame = -2 
Query:  526 NLCSLIRQYGLSKGTDEAMFVIEAYRTLRDRGPYPADQVVKDLDGSFAFVVYDSKAGTVFTA 711
            N   L + YGLS+   EAM ++EAY+ LRDR PYP DQV+K+L+G FAF+++DSKA T+F A
Sbjct:   87 NTFDLRKHYGLSRQATEAMIMVEAYKVLRDRAPYPPDQVIKELEGKFAFILFDSKASTLFLA 148
The following BLAST results are available for this feature:
BLAST of CN188385 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TSJT1_TOBAC1.285e-1456.45Stem-specific protein TSJT1 OS=Nicotiana tabacum G... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0005P06_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005P06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188385 ID=CN188385; Name=CN188385; organism=Citrus sinensis; type=EST; length=712bp
ATTAATAATATATACACAATTGCGGATTGCCCACATAACAAGAAAAACAC
TCTATCAAAGAAAAAGGTCAAAAGAACCTCGAAGAGTGAGTAACAACTTT
ATTTTTAACTTAATAGAAGGAAAAATGAAAGGTAGTAGTTTCAGCTTTTG
AGTTGGAAGTAGGCAAATTCACAGCAAGATCAATCAAATTGATCCTTAAT
TGATAAATTAATGTGAGTCCCATTGATTAGTCCAGTCTGCTTCACTTCCC
ACACGTGGAATGCTGTTGATCCTAGTGTATTTATCAACCTTGAAATTGGC
TCCACACATGACACCTTCACTATCTACTCTTGGCATTGCCCTTATCTTGT
TCATTGGATGCTCAAAGCTCATCAATCCTCCTTCACTGTGGAACATGCAC
CCCTGTGGGAAGGGAGCAAATGACTTGGCACATCCCTCTTTGATGACCTC
CAAGTCATCAGATATGACCACAGATCCATCGGCTGCAATTCCCCAGTACA
GCTTCACTCCCCCATCAGAACCCAGAGCAGTGAAGACCGTGCCGGCCTTG
CTATCGTAGACCACAAAAGCAAAGCTCCCATCAAGATCCTTGACAACCTG
GTCAGCTGGGTAAGGACCCCGGTCTCTGAGCGTACGATACGCCTCTATCA
CAAACATGGCCTCATCGGTTCCCTTTGACAACCCATATTGCCTGATCAGC
GAACACAAGTTG
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