CN188384

Overview
NameCN188384
Unique NameCN188384
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length686
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1828 contig Csv1_Contig1828:116..802. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CN188384 vs. ExPASy Swiss-Prot
Match: TSJT1_TOBAC (Stem-specific protein TSJT1 OS=Nicotiana tabacum GN=TSJT1 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.510e-20
Identity = 51/125 (40.80%), Postives = 74/125 (59.20%), Query Frame = 3 
Query:   51 KRPKLPEDTLSDFLSRHPDNTFSMNFGHAAVLAYVPPHSPLTKDRRLFCGFEDIYCLFMGSLNNLCSLIRQYGLSKGTDEAMFVIEAYRTLRDRGPYPADQVVKDLDGSFAFVVYDSKAGTVFTA 425
            K  K  E+    F +   D+TF   F    +       +PL    R     +D++C+F G+L+N   L + YGLS+   EAM ++EAY+ LRDR PYP DQV+K+L+G FAF+++DSKA T+F A
Sbjct:   26 KEAKTREEIAESFKTWKQDSTFYHLFNGNFMAFSHGNENPLQP--RSIVVMDDVFCIFSGALDNTFDLRKHYGLSRQATEAMIMVEAYKVLRDRAPYPPDQVIKELEGKFAFILFDSKASTLFLA 148
The following BLAST results are available for this feature:
BLAST of CN188384 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TSJT1_TOBAC2.510e-2040.80Stem-specific protein TSJT1 OS=Nicotiana tabacum G... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0005P06_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005P06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188384 ID=CN188384; Name=CN188384; organism=Citrus sinensis; type=EST; length=686bp
CGTTTGCATCCGCCTGAGGAGCTTCATAGCCCTGCGTCTCAACATTTTCG
AAGAGGCCTAAACTCCCTGAGGATACCCTCAGCGACTTCCTCTCCCGTCA
CCCGGATAACACTTTCTCCATGAACTTTGGCCATGCTGCTGTTCTTGCTT
ACGTCCCCCCTCACTCCCCTTTAACCAAGGACCGAAGGTTGTTTTGCGGG
TTTGAGGACATATACTGTCTGTTCATGGGGTCCTTGAACAACTTGTGTTC
GCTGATCAGGCAATATGGGTTGTCAAAGGGAACCGATGAGGCCATGTTTG
TGATAGAGGCGTATCGTACGCTCAGAGACCGGGGTCCTTACCCAGCTGAC
CAGGTTGTCAAGGATCTTGATGGGAGCTTTGCTTTTGTGGTCTACGATAG
CAAGGCCGGCACGGTCTTCACTGCTCTGGGTTCTGATGGGGGAGTGAAGC
TGTACTGGGGAATTGCAGCCGATGGATCTGTGGTCATATCTGATGACTTG
GAGGTCATCAAAGAGGGATGTGCCAAGTCATTTGCTCCCTTCCCACAGGG
GTGCATGTTCCACAGTGAAGGAGGATTGATGAGCTTTGAGCATCCAATGA
ACAAGATAAGGGCAATGCCAAGAGTAGATAGTGAAGGTGTCATGTGTGGA
GCCAATTTCAAGGTTGATAAATACACTAGGATCAAC
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