CN188377

Overview
NameCN188377
Unique NameCN188377
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length738
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188377 vs. ExPASy Swiss-Prot
Match: PGDH_MOUSE (15-hydroxyprostaglandin dehydrogenase [NAD+] OS=Mus musculus GN=Hpgd PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.850e-11
Identity = 48/146 (32.88%), Postives = 73/146 (50.00%), Query Frame = -2
Query:  357 LVAVIDCTQKAIGIM--QAAKKPGVIINMGSSAGLYPFYTDPIYSASKGGVVLFTRS---LTPYKSKGIRINVLCPEFVETELA------------LKAGSQLIDLMG--GFVPMDTVVKGAFELITDESKAGSCLWITNRRGMEY 737
            LV+VI  T   +  M  Q   + G+IINM S AGL P    P+Y ASK G++ FTRS          G+R+NV+CP FV+T +             ++   Q+  +M   G +   T+  G   LI D++  G+ + IT  +G+ +
Sbjct:  108 LVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAGLMPVAQQPVYCASKHGIIGFTRSAAMAANLMKSGVRLNVICPGFVDTPILESIEKEENMGQYIEYKDQIKAMMKFYGVLHPSTIANGLINLIEDDALNGAIMKITASKGIHF 253          
BLAST of CN188377 vs. ExPASy Swiss-Prot
Match: PGDH_CAVPO (15-hydroxyprostaglandin dehydrogenase [NAD+] OS=Cavia porcellus GN=HPGD PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.122e-11
Identity = 47/146 (32.19%), Postives = 71/146 (48.63%), Query Frame = -2
Query:  357 LVAVIDCTQKAIGIM--QAAKKPGVIINMGSSAGLYPFYTDPIYSASKGGVVLFTRSLTPYK---SKGIRINVLCPEFVETELA------------LKAGSQLIDLMG--GFVPMDTVVKGAFELITDESKAGSCLWITNRRGMEY 737
            LV+VI  T   +  M  Q   + GVIINM S AGL P    P+Y ASK G++ FTRS    +   + G+R+N +CP FV T +             ++    + D+M   G +  + +  G   LI D+   G+ + IT   G+ +
Sbjct:  108 LVSVISGTYLGLDYMSKQHGGEGGVIINMSSLAGLMPVAQQPVYCASKHGIIGFTRSAAMARKLMNSGVRMNAICPGFVNTSILQSIEKEENMGPYIEYTGHIKDMMKCYGILDPEMIANGLITLIEDDDLNGAIMKITTSNGIHF 253          
BLAST of CN188377 vs. ExPASy Swiss-Prot
Match: PGDH_BOVIN (15-hydroxyprostaglandin dehydrogenase [NAD+] OS=Bos taurus GN=HPGD PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.182e-11
Identity = 47/146 (32.19%), Postives = 70/146 (47.95%), Query Frame = -2
Query:  357 LVAVIDCTQKAIGIM--QAAKKPGVIINMGSSAGLYPFYTDPIYSASKGGVVLFTRS---LTPYKSKGIRINVLCPEFVETELALKAGSQ-----LIDLMG---------GFVPMDTVVKGAFELITDESKAGSCLWITNRRGMEY 737
            LV+VI  T   +  M  Q   + G+ INM S AGL P    P+Y ASK G+V FTRS        + G+R+N +CP FV+T +      +      I+ MG         G +    +  G   LI D++  G+ + IT  +G+ +
Sbjct:  108 LVSVISGTYLGLDYMSKQNGGEGGININMSSLAGLMPVAQQPVYCASKHGIVGFTRSAAMAANLMNSGVRLNAICPGFVDTPILKSIEKEENMGKYIEYMGPIKDMMKYYGILDPSMIANGLITLIEDDALNGAIMKITTSKGIHF 253          
The following BLAST results are available for this feature:
BLAST of CN188377 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
PGDH_MOUSE1.850e-1132.8815-hydroxyprostaglandin dehydrogenase [NAD+] OS=Mu... [more]
PGDH_CAVPO4.122e-1132.1915-hydroxyprostaglandin dehydrogenase [NAD+] OS=Ca... [more]
PGDH_BOVIN9.182e-1132.1915-hydroxyprostaglandin dehydrogenase [NAD+] OS=Bo... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0005P02_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005P02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188377 ID=CN188377; Name=CN188377; organism=Citrus sinensis; type=EST; length=738bp
TTTGAGAGACAAGCTCCTATTCAATCATGTCTCGATAAGGTAACAAGACA
AAAACTCGCATGATACTTGCATAAATTAAAAAAAAAAAAAACACACTCTT
CGCATATTAAATTGAGATCTTAGGTTATTGGTATGCCAGCTTCAGCTCCG
CTTTCACATTGCCAGACCAAATGAAAAACTAAATATTGCCTGAAATTATA
GTCACCGAAAGAGTACAGAAGTTTTGACGTAGTTCACAGTTTCTCAAAAC
TTTCAGGAACTCGGACACTCAGATTCGAAGGAACCTGAGATGAGAATCTT
TTCATGGAACCTGAAGAGCTCACCGAGTATTTTGCTTCTTCTTCAGAGGT
GGGCCAATACTCCATGCCTCTCCGATTTGTAATCCATAAGCATGATCCAG
CTTTACTCTCGTCAGTAATAAGCTCAAAAGCACCTTTCACTACCGTATCC
ATAGGTACAAAGCCCCCCATCAGATCAATTAATTGGGAGCCCGCCTTTAA
GGCCAACTCAGTTTCAACAAACTCAGGGCAAAGCACGTTGATGCGAATTC
CCTTGCTTTTGTAGGGAGTAAGTGATCTAGTAAATAAAACAACACCACCT
TTGGAAGCAGAGTAGATTGGATCTGTGTAAAATGGATAAAGTCCTGCAGA
AGATCCCATATTTATAATCACTCCAGGCTTTTTTGCAGCTTGCATAATTC
CAATCGCTTTCTGAGTGCAATCAATAACTGCAACCAAG
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