CN188373

Overview
NameCN188373
Unique NameCN188373
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length737
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188373 vs. ExPASy Swiss-Prot
Match: Y4523_ARATH (Probable serine/threonine-protein kinase At4g35230 OS=Arabidopsis thaliana GN=At4g35230 PE=1 SV=1)

HSP 1 Score: 322.398 bits (825), Expect = 1.584e-87
Identity = 152/180 (84.44%), Postives = 168/180 (93.33%), Query Frame = -2
Query:  194 RPDVPSYVMLGIPRHEEAPPTPQHPLSPMGDACSRMDLTAIHQILVMTHYKDDEGTNELSFQEWTQQMRDMLEARKRGDVAFREKEFKTAVDCYSQFIDVGTMVSPTVYARRSLCHLMCDQPDAALRDAMQAQCVYPDWSTAFYMQAVALAKLDMHKDAADMLKEAASLEEKRQRSGRGS 733
            + DVPSYVMLGI + EEAP TPQ PLSP+G+ACSRMDLTAIHQILVMTHY+DDEGTNELSFQEWTQQM+DML+ARKRGD +FREK+FKTA+DCYSQFIDVGTMVSPTV+ RRSLC+L+CDQPDAALRDAMQAQCVYPDW TAFYMQ+VALAKL+M+ DAADML EAA LEEKRQR GRGS
Sbjct:  333 KSDVPSYVMLGIKKQEEAPSTPQRPLSPLGEACSRMDLTAIHQILVMTHYRDDEGTNELSFQEWTQQMKDMLDARKRGDQSFREKDFKTAIDCYSQFIDVGTMVSPTVFGRRSLCYLLCDQPDAALRDAMQAQCVYPDWPTAFYMQSVALAKLNMNTDAADMLNEAAQLEEKRQRGGRGS 512          
BLAST of CN188373 vs. ExPASy Swiss-Prot
Match: SSP_ARATH (Probable inactive receptor-like kinase SSP OS=Arabidopsis thaliana GN=SSP PE=1 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.472e-48
Identity = 92/173 (53.18%), Postives = 129/173 (74.57%), Query Frame = -2
Query:  215 RPDVPSYVMLGIPRHEEAPPTPQHPLSPMGDACSRMDLTAIHQILVMTHYKDDEGTNELSFQEWTQQMRDMLEARKRGDVAFREKEFKTAVDCYSQFIDVGTMVSPTVYARRSLCHLMCDQPDAALRDAMQAQCVYPDWSTAFYMQAVALAKLDMHKDAADMLKEAASLEEKR 733
            R + PSY ++ +   E+   +  + LSP+G+AC RMDL +IH ILV+  Y DD+   ELSF+EW Q+++++ + R+ GD AF E++FKTA+ CYSQF++  ++V P+VYARRSL +L CD+P+ AL D M AQ V+PDW TAFY+Q+VALAKLDM+ D+AD LKEAA LE K+
Sbjct:  294 RTEAPSYEVVEMTNQEKDASSSSN-LSPLGEACLRMDLASIHSILVLAGYDDDKDIIELSFEEWIQEVKELQDVRRNGDRAFVEQDFKTAIACYSQFVEERSLVYPSVYARRSLSYLFCDEPEKALLDGMHAQGVFPDWPTAFYLQSVALAKLDMNTDSADTLKEAALLEVKK 465          
BLAST of CN188373 vs. ExPASy Swiss-Prot
Match: Y5126_ARATH (Probable serine/threonine-protein kinase At5g41260 OS=Arabidopsis thaliana GN=At5g41260 PE=1 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.269e-44
Identity = 93/172 (54.07%), Postives = 118/172 (68.60%), Query Frame = -2
Query:  215 DVPSYVMLGIPRHEEAPPTPQHPLSPMGDACSRMDLTAIHQILVMTHYKDDEG-TNELSFQEWTQQMRDMLEARKRGDVAFREKEFKTAVDCYSQFIDVGTMVSPTVYARRSLCHLMCDQPDAALRDAMQAQCVYPDWSTAFYMQAVALAKLDMHKDAADMLKEAASLEEKR 727
            ++ S+ +LG+P            LSP+G+AC R DLTAIH+I+    YKDDEG T ELSFQ WT QM+D L  +K+GD AFR K+F  A++CYSQFI+VGTM SPTV+AR+SLC+LM D P  AL +AMQAQ + P W  A Y+QAVAL+ L    +A   LK+ A LE KR
Sbjct:  318 EIASHQLLGVPNSATTTA-----LSPLGEACLRSDLTAIHEIIEKLGYKDDEGATTELSFQMWTDQMQDTLVFKKKGDSAFRHKDFAKAIECYSQFIEVGTMGSPTVHARQSLCYLMNDMPREALNNAMQAQVISPAWHIASYLQAVALSALGQENEAHTALKDGAMLESKR 484          
The following BLAST results are available for this feature:
BLAST of CN188373 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
Y4523_ARATH1.584e-8784.44Probable serine/threonine-protein kinase At4g35230... [more]
SSP_ARATH2.472e-4853.18Probable inactive receptor-like kinase SSP OS=Arab... [more]
Y5126_ARATH1.269e-4454.07Probable serine/threonine-protein kinase At5g41260... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0005O23_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005O23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188373 ID=CN188373; Name=CN188373; organism=Citrus sinensis; type=EST; length=737bp
TTTTTTTTTTTTTTTTTAAAAAGAAAAAAATAGCACAACAGACAAGTACA
GAACAAGTCTGTCCTCCCTCTATGGTACATTTTGGAAGAAAACCATATTC
CTAATTTCAAATTACATAAAGCCCAAATGCTTTCTTACAACCACCACAAC
AATTGATTGAACACAGGCTACAAAAGAATATTACAGCTTCTCAAGAACCT
CTCCCACTCCGTTGCCTTTTTTCTTCTAATGAGGCAGCCTCCTTTAACAT
ATCAGCTGCATCCTTGTGCATGTCCAACTTCGCAAGGGCAACAGCCTGCA
TGTAAAATGCTGTGGACCAGTCGGGATAAACACATTGTGCTTGCATTGCA
TCTCTAAGTGCAGCATCTGGCTGGTCACACATTAAATGACAAAGACTTCT
CCGTGCATAGACAGTTGGTGAAACCATGGTTCCCACGTCTATAAACTGAG
AATAGCAATCTACGGCAGTTTTAAATTCTTTCTCTCGGAATGCCACATCC
CCACGCTTTCTAGCCTCCAACATATCTCTCATTTGTTGGGTCCACTCTTG
AAAAGACAACTCATTGGTTCCTTCATCATCTTTGTAGTGTGTCATCACCA
AGATCTGGTGGATGGCTGTGAGGTCCATCCGTGAACAAGCATCACCCATT
GGAGAAAGAGGGTGCTGTGGAGTAGGAGGTGCTTCCTCATGCCTTGGAAT
TCCCAGCATCACATAAGAAGGAACATCAGGTCTATTT
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