CN188364

Overview
NameCN188364
Unique NameCN188364
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length683
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN188364_ssr47 microsatellite CN188364_ssr47:47..58. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2478 contig Csv1_Contig2478:76..758. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN188364 vs. ExPASy Swiss-Prot
Match: NH2L1_XENTR (NHP2-like protein 1 OS=Xenopus tropicalis GN=nhp2l1 PE=2 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 4.215e-44
Identity = 93/128 (72.66%), Postives = 103/128 (80.47%), Query Frame = -2 
Query:  242 MTGEAVNPKAYPLADSNLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFIVMAADTXXXXXXXXXXXLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQLKTQIQQLKDAIEKLLI 625
            MT   VNPKAYPLAD+ LT T+LDLVQQAANYKQL+KGANEATKTLNRGI+EFIVMAAD            L EDKNVPYVFV SKQALGRACGV+RPVIAC+VT  E SQLK QIQ L+ +IE+LL+
Sbjct:    1 MTEPEVNPKAYPLADAQLTKTLLDLVQQAANYKQLRKGANEATKTLNRGIAEFIVMAADAEPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACAVTIKEGSQLKPQIQSLQQSIERLLV 128
[Close]
BLAST of CN188364 vs. ExPASy Swiss-Prot
Match: NH2L1_XENLA (NHP2-like protein 1 OS=Xenopus laevis GN=nhp2l1 PE=2 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 4.215e-44
Identity = 93/128 (72.66%), Postives = 103/128 (80.47%), Query Frame = -2 
Query:  242 MTGEAVNPKAYPLADSNLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFIVMAADTXXXXXXXXXXXLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQLKTQIQQLKDAIEKLLI 625
            MT   VNPKAYPLAD+ LT T+LDLVQQ+ANYKQL+KGANEATKTLNRGI+EFIVMAAD            L EDKNVPYVFV SKQALGRACGV+RPVIACSVT  E SQLK QIQ ++ AIE+LL+
Sbjct:    1 MTEPEVNPKAYPLADAQLTKTLLDLVQQSANYKQLRKGANEATKTLNRGIAEFIVMAADAEPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACSVTIKEGSQLKPQIQSVQQAIERLLV 128
[Close]
BLAST of CN188364 vs. ExPASy Swiss-Prot
Match: NH2L1_RAT (NHP2-like protein 1 OS=Rattus norvegicus GN=Nhp2l1 PE=2 SV=4)

HSP 1 Score: 174.481 bits (441), Expect = 4.661e-43
Identity = 91/128 (71.09%), Postives = 102/128 (79.69%), Query Frame = -2 
Query:  242 MTGEAVNPKAYPLADSNLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFIVMAADTXXXXXXXXXXXLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQLKTQIQQLKDAIEKLLI 625
            MT   VNPKAYPLAD++LT  +LDLVQQ+ NYKQL+KGANEATKTLNRGISEFIVMAAD            L EDKNVPYVFV SKQALGRACGV+RPVIACSVT  E SQLK QIQ ++ +IE+LL+
Sbjct:    1 MTEADVNPKAYPLADAHLTKKLLDLVQQSCNYKQLRKGANEATKTLNRGISEFIVMAADAEPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACSVTIKEGSQLKQQIQSIQQSIERLLV 128
[Close]
BLAST of CN188364 vs. ExPASy Swiss-Prot
Match: NH2L1_MOUSE (NHP2-like protein 1 OS=Mus musculus GN=Nhp2l1 PE=2 SV=4)

HSP 1 Score: 174.481 bits (441), Expect = 4.661e-43
Identity = 91/128 (71.09%), Postives = 102/128 (79.69%), Query Frame = -2 
Query:  242 MTGEAVNPKAYPLADSNLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFIVMAADTXXXXXXXXXXXLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQLKTQIQQLKDAIEKLLI 625
            MT   VNPKAYPLAD++LT  +LDLVQQ+ NYKQL+KGANEATKTLNRGISEFIVMAAD            L EDKNVPYVFV SKQALGRACGV+RPVIACSVT  E SQLK QIQ ++ +IE+LL+
Sbjct:    1 MTEADVNPKAYPLADAHLTKKLLDLVQQSCNYKQLRKGANEATKTLNRGISEFIVMAADAEPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACSVTIKEGSQLKQQIQSIQQSIERLLV 128
[Close]
BLAST of CN188364 vs. ExPASy Swiss-Prot
Match: NH2L1_MACFA (NHP2-like protein 1 OS=Macaca fascicularis GN=NHP2L1 PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 4.661e-43
Identity = 91/128 (71.09%), Postives = 102/128 (79.69%), Query Frame = -2 
Query:  242 MTGEAVNPKAYPLADSNLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFIVMAADTXXXXXXXXXXXLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQLKTQIQQLKDAIEKLLI 625
            MT   VNPKAYPLAD++LT  +LDLVQQ+ NYKQL+KGANEATKTLNRGISEFIVMAAD            L EDKNVPYVFV SKQALGRACGV+RPVIACSVT  E SQLK QIQ ++ +IE+LL+
Sbjct:    1 MTEADVNPKAYPLADAHLTKKLLDLVQQSCNYKQLRKGANEATKTLNRGISEFIVMAADAEPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACSVTIKEGSQLKQQIQSIQQSIERLLV 128
[Close]
BLAST of CN188364 vs. ExPASy Swiss-Prot
Match: NH2L1_HUMAN (NHP2-like protein 1 OS=Homo sapiens GN=NHP2L1 PE=1 SV=3)

HSP 1 Score: 174.481 bits (441), Expect = 4.661e-43
Identity = 91/128 (71.09%), Postives = 102/128 (79.69%), Query Frame = -2 
Query:  242 MTGEAVNPKAYPLADSNLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFIVMAADTXXXXXXXXXXXLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQLKTQIQQLKDAIEKLLI 625
            MT   VNPKAYPLAD++LT  +LDLVQQ+ NYKQL+KGANEATKTLNRGISEFIVMAAD            L EDKNVPYVFV SKQALGRACGV+RPVIACSVT  E SQLK QIQ ++ +IE+LL+
Sbjct:    1 MTEADVNPKAYPLADAHLTKKLLDLVQQSCNYKQLRKGANEATKTLNRGISEFIVMAADAEPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACSVTIKEGSQLKQQIQSIQQSIERLLV 128
[Close]
BLAST of CN188364 vs. ExPASy Swiss-Prot
Match: NH2L1_CAEEL (NHP2-like protein 1 homolog OS=Caenorhabditis elegans GN=M28.5 PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 4.661e-43
Identity = 90/128 (70.31%), Postives = 102/128 (79.69%), Query Frame = -2 
Query:  242 MTGEAVNPKAYPLADSNLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFIVMAADTXXXXXXXXXXXLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQLKTQIQQLKDAIEKLLI 625
            M  + VNPKA+PLAD+NL+  ++DLVQQA NYKQLKKGANEATKTLNRGISE IVMAAD            L EDKNVPYVFV SK ALGRACGVTRPVIA S+T NE SQLK+QIQ++K+ +EKLLI
Sbjct:    1 MADDGVNPKAFPLADTNLSQKLMDLVQQAMNYKQLKKGANEATKTLNRGISEIIVMAADAEPLEILLHLPLLCEDKNVPYVFVRSKAALGRACGVTRPVIAASITQNEGSQLKSQIQKIKEDVEKLLI 128
[Close]
BLAST of CN188364 vs. ExPASy Swiss-Prot
Match: NH2L1_BOVIN (NHP2-like protein 1 OS=Bos taurus GN=NHP2L1 PE=2 SV=3)

HSP 1 Score: 174.481 bits (441), Expect = 4.661e-43
Identity = 91/128 (71.09%), Postives = 102/128 (79.69%), Query Frame = -2 
Query:  242 MTGEAVNPKAYPLADSNLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFIVMAADTXXXXXXXXXXXLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQLKTQIQQLKDAIEKLLI 625
            MT   VNPKAYPLAD++LT  +LDLVQQ+ NYKQL+KGANEATKTLNRGISEFIVMAAD            L EDKNVPYVFV SKQALGRACGV+RPVIACSVT  E SQLK QIQ ++ +IE+LL+
Sbjct:    1 MTEADVNPKAYPLADAHLTKKLLDLVQQSCNYKQLRKGANEATKTLNRGISEFIVMAADAEPLEIILHLPLLCEDKNVPYVFVRSKQALGRACGVSRPVIACSVTIKEGSQLKQQIQSIQQSIERLLV 128
[Close]
BLAST of CN188364 vs. ExPASy Swiss-Prot
Match: SNU13_SCHPO (13 kDa ribonucleoprotein-associated protein OS=Schizosaccharomyces pombe GN=snu13 PE=2 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.038e-42
Identity = 92/124 (74.19%), Postives = 102/124 (82.26%), Query Frame = -2 
Query:  242 AVNPKAYPLADSNLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFIVMAADTXXXXXXXXXXXLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQLKTQIQQLKDAIEKLLI 613
            +VNPKA+PLADS LT  ILDLVQQA++YKQL+KGANEATKTLNRGISEFIVMAADT           L EDKNVPYVFVPSK ALGRACGV+RPVI+ S+T+NEAS L  QIQ +K AIEKLLI
Sbjct:    2 SVNPKAFPLADSGLTQQILDLVQQASHYKQLRKGANEATKTLNRGISEFIVMAADTEPIEILLHLPLLCEDKNVPYVFVPSKAALGRACGVSRPVISASITTNEASDLLPQIQAIKLAIEKLLI 125
[Close]
BLAST of CN188364 vs. ExPASy Swiss-Prot
Match: SNU13_CANAL (13 kDa ribonucleoprotein-associated protein OS=Candida albicans GN=SNU13 PE=3 SV=1)

HSP 1 Score: 167.548 bits (423), Expect = 5.697e-41
Identity = 89/124 (71.77%), Postives = 98/124 (79.03%), Query Frame = -2 
Query:  242 AVNPKAYPLADSNLTITILDLVQQAANYKQLKKGANEATKTLNRGISEFIVMAADTXXXXXXXXXXXLAEDKNVPYVFVPSKQALGRACGVTRPVIACSVTSNEASQLKTQIQQLKDAIEKLLI 613
            A NPKA+PLADS LT  ILD+VQQ+ N +QLKKGANEATKTLNRGISEFI+MAADT           L EDKNVPYVFVPSK ALGRACGV+RPVIA SVTSN+AS +K QI  +KD IE LLI
Sbjct:    3 APNPKAFPLADSALTQQILDVVQQSQNLRQLKKGANEATKTLNRGISEFIIMAADTEPIEILLHLPLLCEDKNVPYVFVPSKAALGRACGVSRPVIAASVTSNDASSIKNQIYGIKDKIETLLI 126
The following BLAST results are available for this feature:
BLAST of CN188364 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
NH2L1_XENTR4.215e-4472.66NHP2-like protein 1 OS=Xenopus tropicalis GN=nhp2l... [more]
NH2L1_XENLA4.215e-4472.66NHP2-like protein 1 OS=Xenopus laevis GN=nhp2l1 PE... [more]
NH2L1_RAT4.661e-4371.09NHP2-like protein 1 OS=Rattus norvegicus GN=Nhp2l1... [more]
NH2L1_MOUSE4.661e-4371.09NHP2-like protein 1 OS=Mus musculus GN=Nhp2l1 PE=2... [more]
NH2L1_MACFA4.661e-4371.09NHP2-like protein 1 OS=Macaca fascicularis GN=NHP2... [more]
NH2L1_HUMAN4.661e-4371.09NHP2-like protein 1 OS=Homo sapiens GN=NHP2L1 PE=1... [more]
NH2L1_CAEEL4.661e-4370.31NHP2-like protein 1 homolog OS=Caenorhabditis eleg... [more]
NH2L1_BOVIN4.661e-4371.09NHP2-like protein 1 OS=Bos taurus GN=NHP2L1 PE=2 S... [more]
SNU13_SCHPO1.038e-4274.1913 kDa ribonucleoprotein-associated protein OS=Sch... [more]
SNU13_CANAL5.697e-4171.7713 kDa ribonucleoprotein-associated protein OS=Can... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005O15_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005O15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188364 ID=CN188364; Name=CN188364; organism=Citrus sinensis; type=EST; length=683bp
TTTTTTTTTTTTTTTTTAAACACAGTTATAACCATTGTTTGTAGCATCAT
TCATTCATTGCAGGTTCTGGTAAATATGATTCCAAAAGCTTTCCCATAAT
GCATGACAAGAAAACATAAAAGACAAAAATACAAAGATTAATAATAGAAG
ATTTCCAAGCAGCACAACTACACCATCAGTCAAAGCCTCTAACCACCATC
AAAGAGGCCCATCACACCGAATATGAATCCCATTATATTCATATCAAGAG
CTTCTCAATGGCATCCTTCAGCTGTTGAATTTGAGTCTTCAACTGACTCG
CCTCATTTGAGGTCACAGAGCAAGCAATGACAGGTCTTGTGACCCCACAT
GCCCTGCCAAGAGCCTGCTTTGAAGGGACAAAAACATAGGGAACATTCTT
GTCCTCTGCAAGCAGTGGAAGATGAAGAAGAATCTCCAGAGGCTCGGTAT
CAGCAGCCATCACAATAAACTCGGAGATACCTCTGTTAAGAGTCTTAGTA
GCTTCATTGGCGCCCTTTTTGAGCTGCTTGTAATTGGCAGCTTGCTGAAC
GAGATCCAGTATCGTGATTGTGAGATTAGAATCTGCTAGCGGGTAAGCTT
TAGGGTTCACTGCTTCTCCTGTCATTTTCGTGGTGGCGGGGACGGAGGCT
AGGGTTTTTGTGGCAGCTAATGAAGCGTACCCT
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