CN188349

Overview
NameCN188349
Unique NameCN188349
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length803
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN188349_ssr701 microsatellite CN188349_ssr701:701..712. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5131 contig Csv1_Contig5131:800..1599. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188349 vs. ExPASy Swiss-Prot
Match: MDARS_CUCSA (Monodehydroascorbate reductase, seedling isozyme OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 353.599 bits (906), Expect = 7.412e-97
Identity = 171/211 (81.04%), Postives = 187/211 (88.63%), Query Frame = -1
Query:  171 KGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQFAENKGGIKTDDFFRTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGDTVLFGDNDPASATHKFGTYWIKDGKVVGVFLESGTPEENKAIAKVARVQPSVESLDVLKNEGLSFASKI 803
            KGTVAVGFT + +GEVKEVKLKDGR LEADIVVVGVG RPL SLFKGQ  E KGGIKTD+FF+TS  DVYAVGDVATFP+KLY E+RRVEHVDH+RKSAEQAVK I A+E GK +  YDYLPYFYSR+FDLSWQFYGDNVGD VLFGDN P SATHKFG+YWIKDGKVVG FLESG+PEENKAIAKVAR+QPSVES D+L  EG+SFASK+
Sbjct:  224 KGTVAVGFTVDTNGEVKEVKLKDGRVLEADIVVVGVGARPLTSLFKGQIVEEKGGIKTDEFFKTSVPDVYAVGDVATFPLKLYNELRRVEHVDHSRKSAEQAVKAIKASEEGKAIEEYDYLPYFYSRSFDLSWQFYGDNVGDAVLFGDNSPDSATHKFGSYWIKDGKVVGAFLESGSPEENKAIAKVARIQPSVESSDLLLKEGISFASKV 434          
BLAST of CN188349 vs. ExPASy Swiss-Prot
Match: MDAR_PEA (Monodehydroascorbate reductase OS=Pisum sativum PE=1 SV=1)

HSP 1 Score: 343.584 bits (880), Expect = 7.670e-94
Identity = 167/211 (79.15%), Postives = 184/211 (87.20%), Query Frame = -1
Query:  171 KGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQFAENKGGIKTDDFFRTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGDTVLFGDNDPASATHKFGTYWIKDGKVVGVFLESGTPEENKAIAKVARVQPSVESLDVLKNEGLSFASKI 803
            KGTVAVGFT N+DGEVKEVKLKDGR LEADIV+VGVGGRP ISLFKGQ  E  GGIKTD FF+TS  DVYAVGDVATFP+KLY ++RRVEHVDHARKSAEQA K I A + GK+V  YDYLPYFYSR+FDLSWQFYGDNVG+TVLFGDNDPAS+  KFGTYWIK+GKVVG FLE GTP+ENKAIAKVAR +P+VE ++ L  EGLSFASKI
Sbjct:  223 KGTVAVGFTANSDGEVKEVKLKDGRVLEADIVIVGVGGRPQISLFKGQVEEQHGGIKTDSFFKTSVPDVYAVGDVATFPLKLYNDVRRVEHVDHARKSAEQAAKAIFAADVGKSVEEYDYLPYFYSRSFDLSWQFYGDNVGETVLFGDNDPASSKPKFGTYWIKEGKVVGAFLEGGTPDENKAIAKVARAKPAVEDVNQLAEEGLSFASKI 433          
BLAST of CN188349 vs. ExPASy Swiss-Prot
Match: MDAR_SOLLC (Monodehydroascorbate reductase OS=Solanum lycopersicum GN=AFRR PE=1 SV=1)

HSP 1 Score: 338.961 bits (868), Expect = 1.889e-92
Identity = 168/211 (79.62%), Postives = 184/211 (87.20%), Query Frame = -1
Query:  171 KGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQFAENKGGIKTDDFFRTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGDTVLFGDNDPASATHKFGTYWIKDGKVVGVFLESGTPEENKAIAKVARVQPSVESLDVLKNEGLSFASKI 803
            KGTVAVGF T+ +GEVKEVKLKDGR LEADIVVVGVG RPL +LFKGQ  E KGGIKTD FF+TS  DVYAVGDVATFP+K+Y E+RRVEHVDH+RKSAEQAVK I A+E GK+V  YDYLPYFYSRAFDLSWQFYGDNVG+TVLFGD DP SATHKFG YWIKDGK+VG FLESG+PEENKAIAKVA+VQP   +LD L  EG+SFASKI
Sbjct:  224 KGTVAVGFDTHPNGEVKEVKLKDGRVLEADIVVVGVGARPLTTLFKGQVEEEKGGIKTDAFFKTSVPDVYAVGDVATFPLKMYNEIRRVEHVDHSRKSAEQAVKAIFASEQGKSVDEYDYLPYFYSRAFDLSWQFYGDNVGETVLFGDADPNSATHKFGQYWIKDGKIVGAFLESGSPEENKAIAKVAKVQPPA-TLDQLAQEGISFASKI 433          
BLAST of CN188349 vs. ExPASy Swiss-Prot
Match: MDAR4_ARATH (Probable monodehydroascorbate reductase, cytoplasmic isoform 4 OS=Arabidopsis thaliana GN=At5g03630 PE=1 SV=1)

HSP 1 Score: 338.576 bits (867), Expect = 2.467e-92
Identity = 165/211 (78.20%), Postives = 182/211 (86.26%), Query Frame = -1
Query:  171 KGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQFAENKGGIKTDDFFRTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGDTVLFGDNDPASATHKFGTYWIKDGKVVGVFLESGTPEENKAIAKVARVQPSVESLDVLKNEGLSFASKI 803
            KGTVA GFTTN++GEV EVKLKDGRTLEADIV+VGVGGRP+ISLFK Q  E KGG+KTD FF+TS  DVYA+GDVATFPMKLY EMRRVEHVDHARKSAEQAVK I A E G ++  YDYLPYFYSRAFDLSWQFYGDNVG++VLFGDNDP S   KFG+YWIK+ KVVG FLE G+PEEN AIAK+AR QPSVESL+VL  EGLSFA+ I
Sbjct:  225 KGTVASGFTTNSNGEVTEVKLKDGRTLEADIVIVGVGGRPIISLFKDQVEEEKGGLKTDGFFKTSLPDVYAIGDVATFPMKLYNEMRRVEHVDHARKSAEQAVKAIKAAEEGNSIPEYDYLPYFYSRAFDLSWQFYGDNVGESVLFGDNDPESPKPKFGSYWIKERKVVGAFLEGGSPEENNAIAKLARAQPSVESLEVLSKEGLSFATNI 435          
BLAST of CN188349 vs. ExPASy Swiss-Prot
Match: MDAR1_ARATH (Probable monodehydroascorbate reductase, cytoplasmic isoform 1 OS=Arabidopsis thaliana GN=At3g09940 PE=2 SV=1)

HSP 1 Score: 324.324 bits (830), Expect = 4.815e-88
Identity = 160/210 (76.19%), Postives = 176/210 (83.81%), Query Frame = -1
Query:  174 KGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQFAENKGGIKTDDFFRTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGDTVLFGDNDPASATHKFGTYWIKDGKVVGVFLESGTPEENKAIAKVARVQPSVESLDVLKNEGLSFASK 803
            KGTVA GF+TN+DGEV EVKL+DGRTLEA+IVV GVG RP  SLFKGQ  E KGGIKTD FF+TS  DVYA+GDVATFPMK+Y   RRVEH D+ARKSA QAVK I A E GKT+  YDYLPYFYSR F LSW+FYG+NVG++VLFGDNDP S   KFGTYW+KDGKVVGVFLE GT EE+KAIAKVAR QPSVESLDVL  EGLSFA+K
Sbjct:  226 KGTVATGFSTNSDGEVTEVKLEDGRTLEANIVVAGVGARPATSLFKGQLEEEKGGIKTDGFFKTSVPDVYALGDVATFPMKMYGGTRRVEHADNARKSAAQAVKAIKAGEEGKTIPDYDYLPYFYSRFFKLSWEFYGENVGESVLFGDNDPKSPKPKFGTYWVKDGKVVGVFLEGGTQEEHKAIAKVARAQPSVESLDVLSEEGLSFATK 435          
BLAST of CN188349 vs. ExPASy Swiss-Prot
Match: MDAR3_ARATH (Probable monodehydroascorbate reductase, cytoplasmic isoform 3 OS=Arabidopsis thaliana GN=At3g52880 PE=1 SV=1)

HSP 1 Score: 314.309 bits (804), Expect = 4.983e-85
Identity = 149/211 (70.62%), Postives = 179/211 (84.83%), Query Frame = -1
Query:  171 KGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQFAENKGGIKTDDFFRTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGDTVLFGDNDPASATHKFGTYWIKDGKVVGVFLESGTPEENKAIAKVARVQPSVESLDVLKNEGLSFASKI 803
            KGTVA GFT   +GEVKEV+LKDGRTLEADIV+VGVG +PL SLFKGQ  E+KGGIKTD FF+TS  DVYAVGDVATFP+K+Y ++RRVEHVDH+RKSAEQAVK I A EGG  V  YDYLP+FYSR+FDLSWQFYGDNVGD+VLFGD++P++   +FG YW++ GKVVG F+E G+ +ENKA+AKVA+ +PS ESLD L  +G+SFA+KI
Sbjct:  224 KGTVASGFTAQPNGEVKEVQLKDGRTLEADIVIVGVGAKPLTSLFKGQVEEDKGGIKTDAFFKTSVPDVYAVGDVATFPLKMYGDVRRVEHVDHSRKSAEQAVKAIKAAEGGAAVEEYDYLPFFYSRSFDLSWQFYGDNVGDSVLFGDSNPSNPKPRFGAYWVQGGKVVGAFMEGGSGDENKALAKVAKARPSAESLDELVKQGISFAAKI 434          
BLAST of CN188349 vs. ExPASy Swiss-Prot
Match: MDAR2_ARATH (Probable monodehydroascorbate reductase, cytoplasmic isoform 2 OS=Arabidopsis thaliana GN=At3g27820 PE=2 SV=1)

HSP 1 Score: 203.756 bits (517), Expect = 9.485e-52
Identity = 110/213 (51.64%), Postives = 140/213 (65.73%), Query Frame = -1
Query:  171 KGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQFAENKGGIKTDDFFRTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTG-YDYLPYFYSRAFDLSWQFYGDNVGDTVLFGDNDPASATHKFGTYWIKDGKVVGVFLESGTPEENKAIAKVARVQPSVE-SLDVLKNEGLSFASKI 803
            KGTV   F  +++ +V  V LKDG  L AD+VVVG+G RP  SLF+GQ    KGGIK +   ++S   VYA+GDVATFP+KL+ EMRR+EHVD ARKSA  AV  IM        TG +DYLP+FYSR F  SWQFYGD  GD V FG+ +   +   FG YW+K G +VG FLE GT EE + I+K  +++P+V   L+ L+ EGL FA  +
Sbjct:  223 KGTVLTSFEFDSNKKVTAVNLKDGSHLPADLVVVGIGIRPNTSLFEGQLTIEKGGIKVNSRMQSSDSSVYAIGDVATFPVKLFGEMRRLEHVDSARKSARHAVSAIM----DPIKTGDFDYLPFFYSRVFAFSWQFYGDPTGDVVHFGEYEDGKS---FGAYWVKKGHLVGSFLEGGTKEEYETISKATQLKPAVTIDLEELEREGLGFAHTV 428          
BLAST of CN188349 vs. ExPASy Swiss-Prot
Match: MDARF_CUCSA (Monodehydroascorbate reductase, fruit isozyme (Fragments) OS=Cucumis sativus PE=1 SV=1)

HSP 1 Score: 201.06 bits (510), Expect = 6.148e-51
Identity = 115/190 (60.53%), Postives = 128/190 (67.37%), Query Frame = -1
Query:  204 NADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQFAENKGGIKTDDFFRTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQFYGDNVGDTVLFGDNDPASATHKFGTYWIKDGKVVGVFLESGTPEENKAIAKVARVQPSVESLDVL 773
            +AD  V+ +KLKDGRTL+ADIVVVGVGGRPL+SLFK                 TS  DVYAVGDVAT+P+KLY E+RRVEHVDHAR S E+                YDYLPYFYSR F+L+WQFYGDNVG+TVLF DN        FGTYWI   KVVGVFLE GTP+E     KVARVQP VESLD L
Sbjct:   23 DADQLVEAIKLKDGRTLDADIVVVGVGGRPLVSLFK-----------------TSIPDVYAVGDVATYPLKLYNELRRVEHVDHARLSIEE----------------YDYLPYFYSRTFNLAWQFYGDNVGETVLFPDN--------FGTYWI---KVVGVFLEGGTPDE----YKVARVQPPVESLDQL 164          
BLAST of CN188349 vs. ExPASy Swiss-Prot
Match: MDARP_ARATH (Monodehydroascorbate reductase, chloroplastic OS=Arabidopsis thaliana GN=At1g63940 PE=2 SV=3)

HSP 1 Score: 186.422 bits (472), Expect = 1.567e-46
Identity = 100/220 (45.45%), Postives = 134/220 (60.91%), Query Frame = -1
Query:  171 KGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFKGQFAENK--GGIKTDDFFRTSADDVYAVGDVATFPMKLYREMRRVEHVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLS-------WQFYGDNVGDTVLFGDNDPASATHKFGTYWIKDGKVVGVFLESGTPEENKAIAKVARVQPSVESLDVLKNEGLSFASKI 803
            KG         +DG V  VKL DG T+EAD VV+G+G +P I  F+   A NK  GGI+ D  FRTS   ++A+GDVA FP+K+Y  M RVEHVDHAR+SA+  VK+++          YDYLPYFYSR F+         WQF+GDNVG+TV  G+ DP     K  T+WI+ G++ GV +ESG+PEE + + K+AR QP V+   +     +  A +I
Sbjct:  277 KGASINNLEAGSDGRVSAVKLADGSTIEADTVVIGIGAKPAIGPFE-TLAMNKSIGGIQVDGLFRTSTPGIFAIGDVAAFPLKIYDRMTRVEHVDHARRSAQHCVKSLLTAH----TDTYDYLPYFYSRVFEYEGSPRKVWWQFFGDNVGETVEVGNFDP-----KIATFWIESGRLKGVLVESGSPEEFQLLPKLARSQPLVDKAKLASASSVEEALEI 486          
BLAST of CN188349 vs. ExPASy Swiss-Prot
Match: AIFM3_HUMAN (Apoptosis-inducing factor 3 OS=Homo sapiens GN=AIFM3 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.792e-11
Identity = 52/187 (27.81%), Postives = 90/187 (48.13%), Query Frame = -1
Query:  225 DGEVKEVKLKDGRTLEADIVVVGVGGRPLISLFK--GQFAENKGGIKTDDFFRTSADDVYAVGDVATFPMKLYREMRRVE--HVDHARKSAEQAVKTIMATEGGKTVTGYDYLPYFYSRAFDLSWQF--YGDNVGDTVLFGDNDPASATHKFGTYWIKDGKVVGVFLESGTPEENKAIAKVARVQPS 767
            +G++KEV LK  + + AD+ VVG+G  P     +  G   +++G I  +   +T+   V+A GD  TFP+  +R  R+V   H   A      A + ++A E   +      +PY ++  F  S ++  YG+   D ++ GD +      KF  ++ K  +V+ V   +  P     ++KVA V  S
Sbjct:  404 EGKLKEVVLKSSKVVRADVCVVGIGAVPATGFLRQSGIGLDSRGFIPVNKMMQTNVPGVFAAGDAVTFPL-AWRNNRKVNIPHWQMAHAQGRVAAQNMLAQEAEMST-----VPYLWTAMFGKSLRYAGYGEGFDDVIIQGDLEEL----KFVAFYTKGDEVIAVASMNYDP----IVSKVAEVLAS 576          
The following BLAST results are available for this feature:
BLAST of CN188349 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
MDARS_CUCSA7.412e-9781.04Monodehydroascorbate reductase, seedling isozyme O... [more]
MDAR_PEA7.670e-9479.15Monodehydroascorbate reductase OS=Pisum sativum PE... [more]
MDAR_SOLLC1.889e-9279.62Monodehydroascorbate reductase OS=Solanum lycopers... [more]
MDAR4_ARATH2.467e-9278.20Probable monodehydroascorbate reductase, cytoplasm... [more]
MDAR1_ARATH4.815e-8876.19Probable monodehydroascorbate reductase, cytoplasm... [more]
MDAR3_ARATH4.983e-8570.62Probable monodehydroascorbate reductase, cytoplasm... [more]
MDAR2_ARATH9.485e-5251.64Probable monodehydroascorbate reductase, cytoplasm... [more]
MDARF_CUCSA6.148e-5160.53Monodehydroascorbate reductase, fruit isozyme (Fra... [more]
MDARP_ARATH1.567e-4645.45Monodehydroascorbate reductase, chloroplastic OS=A... [more]
AIFM3_HUMAN2.792e-1127.81Apoptosis-inducing factor 3 OS=Homo sapiens GN=AIF... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0005O07_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005O07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188349 ID=CN188349; Name=CN188349; organism=Citrus sinensis; type=EST; length=803bp
GGGGGCAAGCGGGCCAGCCTTTTTTTTTTACCAAATTATAGCATTTATTT
AACCAAATCCCAAACGTAGACTTACAAAACCAACAAGTTTAAAAGCAAAT
AAGATATATTTTTCAAAACAGTTGCTCTGAAATCACAATATTATTATCCC
CTCTAAATAAGGCATTCTCAGATCTTGCTAGCAAAGGAAAGACCCTCATT
TTTCAGCACATCCAAGCTTTCAACTGAAGGTTGGACCCTAGCAACTTTGG
CAATGGCTTTGTTTTCTTCTGGAGTTCCACTCTCAAGAAAAACCCCAACA
ACTTTTCCATCTTTGATCCAGTATGTTCCAAACTTATGGGTTGCTGATGC
CGGATCGTTGTCCCCAAACAGCACGGTGTCACCGACATTGTCTCCATAGA
ACTGCCATGACAGATCAAAGGCACGAGAATAGAAGTATGGGAGATAGTCG
TATCCAGTAACTGTTTTACCTCCCTCAGTTGCCATGATGGTCTTCACAGC
CTGCTCAGCTGATTTGCGGGCATGGTCAACATGCTCAACTCTTCTCATTT
CCCGGTACAATTTCATAGGGAAAGTTGCCACATCCCCCACAGCGTACACA
TCATCAGCACTTGTCCTGAAAAAATCATCAGTCTTTATGCCTCCTTTATT
CTCTGCAAACTGCCCTTTAAATAATGATATAAGAGGTCTTCCTCCTACAC
CAACAACAACAATGTCAGCTTCCAGAGTCCTGCCGTCCTTCAGCTTCACT
TCTTTGACCTCTCCATCGGCATTTGTGGTAAATCCAACAGCAACTGTTCC
CTT
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