CN188348

Overview
NameCN188348
Unique NameCN188348
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length556
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11510 contig Csv1_Contig11510:83..638. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CN188348 vs. ExPASy Swiss-Prot
Match: NCPR_CATRO (NADPH--cytochrome P450 reductase OS=Catharanthus roseus GN=CPR PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.235e-25
Identity = 71/156 (45.51%), Postives = 85/156 (54.49%), Query Frame = 2 
Query:   98 KVSPFDLMSAIIRGGKXXXXXXXXXXXXXXXXXXX--LDNKEFVMILTTSIAVLIGCVVVFILRRXXXXXXXXXXXXXXXXXXXXXXXX--DDGKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVGXXXXXXXXXXXXXXKLKKENIVFF 553
            K+SPF+LMSAI++G K                     L+NKE VMILTTS+AVLIGCVVV I RR                          D+GK+K TIFFGTQTGTAEGFAKALA+EA+ARY+KA+ KV               K +KE + FF
Sbjct:    7 KLSPFELMSAILKGAKLDGSNSSDSGVAVSPAVMAMLLENKELVMILTTSVAVLIGCVVVLIWRRSSGSGKKVVEPPKLIVPKSVVEPEEIDEGKKKFTIFFGTQTGTAEGFAKALAEEAKARYEKAVIKVIDIDDYAADDEEYEEKFRKETLAFF 162
[Close]
BLAST of CN188348 vs. ExPASy Swiss-Prot
Match: NCPR_PHAAU (NADPH--cytochrome P450 reductase OS=Phaseolus aureus PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 6.746e-14
Identity = 49/114 (42.98%), Postives = 63/114 (55.26%), Query Frame = 2 
Query:  221 VMILTTSIAVLIGCVVVFILRRXXXXXXXXXXXXXXXXXXXXXXXXDD---GKQKVTIFFGTQTGTAEGFAKALADEARARYDKAIFKVGXXXXXXXXXXXXXXKLKKENIVFF 553
            ++I TTS AV++G ++VF+ ++                         D   GK KVTIFFGTQTGTAEGFAKALA+E +ARY+KA  KV               KLKKE++VFF
Sbjct:   28 LLIATTSAAVVVG-LLVFLWKKSSDRSKEVKPVVVPRDLMMEEEEEVDVAAGKTKVTIFFGTQTGTAEGFAKALAEEIKARYEKAAVKVVDLDDYAADDDLYEEKLKKESLVFF 140
The following BLAST results are available for this feature:
BLAST of CN188348 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
NCPR_CATRO2.235e-2545.51NADPH--cytochrome P450 reductase OS=Catharanthus r... [more]
NCPR_PHAAU6.746e-1442.98NADPH--cytochrome P450 reductase OS=Phaseolus aure... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0005O06_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005O06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188348 ID=CN188348; Name=CN188348; organism=Citrus sinensis; type=EST; length=556bp
GAGGGGGTTCTTCTCTTCTCCCGTTCCATTTCCACTCGCTCTCCGACAAA
TTCATACTATGCAATCATCGTCGTCGTCATCAGAATCAGGCACGATGAAA
GTATCGCCGTTCGACTTGATGTCCGCGATCATCAGAGGTGGCAAGGTCGA
TCCGTCCAACGTGTCGTCGTCCGGTTCAGGAGTTGAAGTTGCTTCGATTG
TGCTCGACAATAAGGAGTTCGTTATGATCTTGACCACGTCTATTGCCGTC
CTCATCGGCTGCGTCGTCGTTTTTATTTTGCGGAGATCTAGTAGCTCCAA
GCCGAAGAAGGTTGAGCCGCTCAAGCCTTTGGTTGTTAAGGAGCCGGAAG
TTGAGGTCGATGATGGAAAGCAGAAGGTCACTATCTTCTTCGGTACTCAA
ACTGGCACAGCTGAAGGATTTGCTAAGGCTTTAGCTGACGAAGCCAGGGC
TCGATATGATAAGGCCATTTTTAAAGTCGGCGATATTGATGATTACGCCG
ACGAGGAAGATGAATATGAAGAGAAATTGAAGAAAGAGAATATAGTATTT
TTCTTC
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