CN188344

Overview
NameCN188344
Unique NameCN188344
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length753
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2107 contig Csv1_Contig2107:141..893. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188344 vs. ExPASy Swiss-Prot
Match: RS15_ELAOL (40S ribosomal protein S15 OS=Elaeis oleifera GN=RPS15 PE=2 SV=1)

HSP 1 Score: 273.092 bits (697), Expect = 1.144e-72
Identity = 138/155 (89.03%), Postives = 141/155 (90.97%), Query Frame = -2
Query:  210 MADVETGVXXXXXXGQPKKRTFKKFSFRGVDLDALLDMSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 674
            MADV   V       QPKKRTF+KFS+RGVDLD LLDM TDEL KLF ARARRRFQRGLKRKPMALIKKLRKAKR+APPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct:    1 MADVSDAVDVGGA--QPKKRTFRKFSYRGVDLDQLLDMGTDELVKLFHARARRRFQRGLKRKPMALIKKLRKAKRDAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 153          
BLAST of CN188344 vs. ExPASy Swiss-Prot
Match: RS15_PICMA (40S ribosomal protein S15 OS=Picea mariana GN=RPS15 PE=2 SV=1)

HSP 1 Score: 269.626 bits (688), Expect = 1.265e-71
Identity = 136/154 (88.31%), Postives = 142/154 (92.21%), Query Frame = -2
Query:  210 ADVETGVXXXXXXGQPKKRTFKKFSFRGVDLDALLDMSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 671
            ADV+ G        QPKKRTFKKFS+RGVDLDALLDM+++EL KLF ARARRRFQRGLKR+PMALIKKLRKAKREAP GEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct:    4 ADVDVG------PVQPKKRTFKKFSYRGVDLDALLDMTSEELVKLFHARARRRFQRGLKRQPMALIKKLRKAKREAPSGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 151          
BLAST of CN188344 vs. ExPASy Swiss-Prot
Match: RS15_ORYSJ (40S ribosomal protein S15 OS=Oryza sativa subsp. japonica GN=RPS15 PE=2 SV=2)

HSP 1 Score: 268.085 bits (684), Expect = 3.680e-71
Identity = 134/155 (86.45%), Postives = 142/155 (91.61%), Query Frame = -2
Query:  210 MADVETGVXXXXXXGQPKKRTFKKFSFRGVDLDALLDMSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 674
            MADVE          QPKKRTF+K+S+RGVDLDALLDMSTD+L +LF ARARRRFQRGLKRKPMALIKKLRKAK++AP GEKPEPVRTHLRNMIIVPEMIGSI+GVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct:    1 MADVEVETEVAAGA-QPKKRTFRKYSYRGVDLDALLDMSTDDLVQLFPARARRRFQRGLKRKPMALIKKLRKAKKDAPAGEKPEPVRTHLRNMIIVPEMIGSIVGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 154          
BLAST of CN188344 vs. ExPASy Swiss-Prot
Match: RS154_ARATH (40S ribosomal protein S15-4 OS=Arabidopsis thaliana GN=RPS15D PE=2 SV=1)

HSP 1 Score: 266.544 bits (680), Expect = 1.071e-70
Identity = 135/155 (87.10%), Postives = 140/155 (90.32%), Query Frame = -2
Query:  210 MADVETGVXXXXXXGQPKKRTFKKFSFRGVDLDALLDMSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 674
            MADVE  V        PKKRTFKKF+F+GVDLDALLDMSTD+L KLFS+R RRRF RGL RKPMALIKKLRKAKREAP GEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPG+GATHSSRFIPLK
Sbjct:    1 MADVEPEVAAAGV---PKKRTFKKFAFKGVDLDALLDMSTDDLVKLFSSRIRRRFSRGLTRKPMALIKKLRKAKREAPAGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGVGATHSSRFIPLK 152          
BLAST of CN188344 vs. ExPASy Swiss-Prot
Match: RS151_ARATH (40S ribosomal protein S15-1 OS=Arabidopsis thaliana GN=RPS15A PE=1 SV=1)

HSP 1 Score: 266.544 bits (680), Expect = 1.071e-70
Identity = 135/155 (87.10%), Postives = 140/155 (90.32%), Query Frame = -2
Query:  210 MADVETGVXXXXXXGQPKKRTFKKFSFRGVDLDALLDMSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 674
            MADVE  V        PKKRTFKKF+F+GVDLDALLDMSTD+L KLFS+R RRRF RGL RKPMALIKKLRKAKREAP GEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPG+GATHSSRFIPLK
Sbjct:    1 MADVEPEVAAAGV---PKKRTFKKFAFKGVDLDALLDMSTDDLVKLFSSRIRRRFSRGLTRKPMALIKKLRKAKREAPQGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGVGATHSSRFIPLK 152          
BLAST of CN188344 vs. ExPASy Swiss-Prot
Match: RS153_ARATH (40S ribosomal protein S15-3 OS=Arabidopsis thaliana GN=RPS15C PE=2 SV=1)

HSP 1 Score: 250.366 bits (638), Expect = 7.940e-66
Identity = 124/138 (89.86%), Postives = 129/138 (93.48%), Query Frame = -2
Query:  210 KKRTFKKFSFRGVDLDALLDMSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 623
            KKRTFKKFSFRGVDLDALLDMSTD+L KLF +R RRRF RGL RKPMALIKKLRKAK EAP GEKP  VRTHLRNMIIVPEMIGS+IGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPG+GAT+SSRFIPLK
Sbjct:   13 KKRTFKKFSFRGVDLDALLDMSTDDLVKLFPSRIRRRFSRGLTRKPMALIKKLRKAKIEAPAGEKPAAVRTHLRNMIIVPEMIGSVIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGVGATNSSRFIPLK 150          
BLAST of CN188344 vs. ExPASy Swiss-Prot
Match: RS155_ARATH (40S ribosomal protein S15-5 OS=Arabidopsis thaliana GN=RPS15E PE=2 SV=1)

HSP 1 Score: 246.899 bits (629), Expect = 8.778e-65
Identity = 123/138 (89.13%), Postives = 128/138 (92.75%), Query Frame = -2
Query:  210 KKRTFKKFSFRGVDLDALLDMSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 623
            KKRTFKKFSFRGVDLDALLDMS ++L K FS+R RRRF RGL RKPMALIKKLRKAK EAP GEKP  VRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPG+GAT+SSRFIPLK
Sbjct:   12 KKRTFKKFSFRGVDLDALLDMSIEDLVKHFSSRIRRRFSRGLTRKPMALIKKLRKAKMEAPAGEKPASVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGVGATNSSRFIPLK 149          
BLAST of CN188344 vs. ExPASy Swiss-Prot
Match: RS152_ARATH (40S ribosomal protein S15-2 OS=Arabidopsis thaliana GN=RPS15B PE=2 SV=1)

HSP 1 Score: 240.736 bits (613), Expect = 6.291e-63
Identity = 121/155 (78.06%), Postives = 133/155 (85.81%), Query Frame = -2
Query:  210 MADVETGVXXXXXXGQPKKRTFKKFSFRGVDLDALLDMSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 674
            MA+VE  V         KKRTFKKFSF+GVDLDALLDM TD+L +LF +R RRR  RGL RKPMALIKKLRKAK +AP GEKPE VRTHLRNM+I+PEMIGSIIGVYNGKTFNQ+EIKPEMIGHYLAEFSI+YKPV+HG+PG GATHSSRFIPLK
Sbjct:    1 MAEVEPDVSAAALA---KKRTFKKFSFKGVDLDALLDMPTDDLVELFPSRIRRRMSRGLTRKPMALIKKLRKAKLDAPAGEKPEVVRTHLRNMVIMPEMIGSIIGVYNGKTFNQIEIKPEMIGHYLAEFSITYKPVRHGKPGHGATHSSRFIPLK 152          
BLAST of CN188344 vs. ExPASy Swiss-Prot
Match: RS15_RAT (40S ribosomal protein S15 OS=Rattus norvegicus GN=Rps15 PE=1 SV=2)

HSP 1 Score: 230.335 bits (586), Expect = 8.503e-60
Identity = 109/140 (77.86%), Postives = 128/140 (91.43%), Query Frame = -2
Query:  210 QPKKRTFKKFSFRGVDLDALLDMSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 629
            Q KKRTF+KF++RGVDLD LLDMS ++L +L+SAR RRR  RGL+RK  +L+K+LRKAK+EAPP EKPE V+THLR+MII+PEM+GS++GVYNGKTFNQVEIKPEMIGHYL EFSI+YKPVKHGRPGIGATHSSRFIPLK
Sbjct:    6 QKKKRTFRKFTYRGVDLDQLLDMSYEQLMQLYSARQRRRLNRGLRRKQHSLLKRLRKAKKEAPPMEKPEVVKTHLRDMIILPEMVGSMVGVYNGKTFNQVEIKPEMIGHYLGEFSITYKPVKHGRPGIGATHSSRFIPLK 145          
BLAST of CN188344 vs. ExPASy Swiss-Prot
Match: RS15_PONAB (40S ribosomal protein S15 OS=Pongo abelii GN=RPS15 PE=2 SV=3)

HSP 1 Score: 230.335 bits (586), Expect = 8.503e-60
Identity = 109/140 (77.86%), Postives = 128/140 (91.43%), Query Frame = -2
Query:  210 QPKKRTFKKFSFRGVDLDALLDMSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 629
            Q KKRTF+KF++RGVDLD LLDMS ++L +L+SAR RRR  RGL+RK  +L+K+LRKAK+EAPP EKPE V+THLR+MII+PEM+GS++GVYNGKTFNQVEIKPEMIGHYL EFSI+YKPVKHGRPGIGATHSSRFIPLK
Sbjct:    6 QKKKRTFRKFTYRGVDLDQLLDMSYEQLMQLYSARQRRRLNRGLRRKQHSLLKRLRKAKKEAPPMEKPEVVKTHLRDMIILPEMVGSMVGVYNGKTFNQVEIKPEMIGHYLGEFSITYKPVKHGRPGIGATHSSRFIPLK 145          
The following BLAST results are available for this feature:
BLAST of CN188344 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 83
Match NameE-valueIdentityDescription
RS15_ELAOL1.144e-7289.0340S ribosomal protein S15 OS=Elaeis oleifera GN=RP... [more]
RS15_PICMA1.265e-7188.3140S ribosomal protein S15 OS=Picea mariana GN=RPS1... [more]
RS15_ORYSJ3.680e-7186.4540S ribosomal protein S15 OS=Oryza sativa subsp. j... [more]
RS154_ARATH1.071e-7087.1040S ribosomal protein S15-4 OS=Arabidopsis thalian... [more]
RS151_ARATH1.071e-7087.1040S ribosomal protein S15-1 OS=Arabidopsis thalian... [more]
RS153_ARATH7.940e-6689.8640S ribosomal protein S15-3 OS=Arabidopsis thalian... [more]
RS155_ARATH8.778e-6589.1340S ribosomal protein S15-5 OS=Arabidopsis thalian... [more]
RS152_ARATH6.291e-6378.0640S ribosomal protein S15-2 OS=Arabidopsis thalian... [more]
RS15_RAT8.503e-6077.8640S ribosomal protein S15 OS=Rattus norvegicus GN=... [more]
RS15_PONAB8.503e-6077.8640S ribosomal protein S15 OS=Pongo abelii GN=RPS15... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005O03_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005O03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188344 ID=CN188344; Name=CN188344; organism=Citrus sinensis; type=EST; length=753bp
TTTTTTTTTTTTTTTTTCCCAGGTAAGGCAGGTTATATTAATCTCCCAAA
ATAAGCATTACTCTTGAGCAGAATATCCTTCAAAACTATTTTGCATCACA
CTCTTTCAAAAGCTTTAATTAAAACTGAAAAGACAAAAACAGGCAGGTCC
AAAATCATTTTTTGGAGGACAAAACATACCCTCCATAAGGACAGCATGCA
AAATCTTCACTTCAGAGGAATGAACCTAGAAGAGTGGGTAGCACCAATAC
CAGGTCTTCCGTGCTTAACTGGCTTGTATGAGATCGAGAACTCGGCTAGG
TAATGTCCAATCATTTCGGGCTTAATTTCAACTTGATTAAAGGTCTTGCC
ATTGTAAACACCAATTATACTACCGATCATTTCAGGCACAATGATCATGT
TGCGAAGATGAGTCCTAACTGGTTCAGGCTTCTCGCCGGGTGGAGCTTCC
CTTTTCGCCTTGCGCAACTTCTTGATCAACGCCATAGGCTTCCTTTTCAA
CCCCCTCTGAAACCTTCTGCGAGCACGGGCGCTAAATAGCTTGGCGAGCT
CATCAGTGGACATGTCCAAAAGAGCGTCCAAATCAACACCTCTGAAGCTA
AACTTCTTGAATGTCCTCTTCTTTGGCTGTCCTGCAGCAGCACCAGCAGC
AACCCCGGTTTCCACATCCGCCATGCCTAGAGACTAGAGTGATAAGGAGA
ATCAAACACCTAATACGCGAGGGAGAGTGTGGGAAAGAGAGAGGGTTCGG
TAC
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