CX300691

Overview
NameCX300691
Unique NameCX300691
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length392
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300691 vs. ExPASy Swiss-Prot
Match: YPTC6_CHLRE (Ras-related protein YPTC6 OS=Chlamydomonas reinhardtii GN=YPTC6 PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 3.684e-26
Identity = 64/97 (65.98%), Postives = 73/97 (75.26%), Query Frame = 2
Query:    2 ELRDHADSNIVIMLVGNKSDLRHLRAVSTEEASQFAEKHGLSFIETSALESTNVEEAFQQILTEIYNIVXXXXXXXXXXAEPKKEEIGGGGAKLVLD 292
            ELRDHADSNIVIMLVGNKSDL+HLR V TE A  F E+ GLSFIETSALESTNVE+AFQQILTEIY+IV          +E  + +IG G   +V+D
Sbjct:  109 ELRDHADSNIVIMLVGNKSDLKHLRDVQTEVAQAFCEREGLSFIETSALESTNVEKAFQQILTEIYHIV----SKKVLDSEDNRPKIGEGRDVIVID 201          
BLAST of CX300691 vs. ExPASy Swiss-Prot
Match: RB11A_RAT (Ras-related protein Rab-11A OS=Rattus norvegicus GN=Rab11a PE=1 SV=3)

HSP 1 Score: 116.316 bits (290), Expect = 4.812e-26
Identity = 60/69 (86.96%), Postives = 63/69 (91.30%), Query Frame = 2
Query:    2 ELRDHADSNIVIMLVGNKSDLRHLRAVSTEEASQFAEKHGLSFIETSALESTNVEEAFQQILTEIYNIV 208
            ELRDHADSNIVIMLVGNKSDLRHLRAV T+EA  FAEK+GLSFIETSAL+STNVE AFQ ILTEIY IV
Sbjct:  108 ELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIV 176          
BLAST of CX300691 vs. ExPASy Swiss-Prot
Match: RB11A_RABIT (Ras-related protein Rab-11A OS=Oryctolagus cuniculus GN=RAB11A PE=2 SV=3)

HSP 1 Score: 116.316 bits (290), Expect = 4.812e-26
Identity = 60/69 (86.96%), Postives = 63/69 (91.30%), Query Frame = 2
Query:    2 ELRDHADSNIVIMLVGNKSDLRHLRAVSTEEASQFAEKHGLSFIETSALESTNVEEAFQQILTEIYNIV 208
            ELRDHADSNIVIMLVGNKSDLRHLRAV T+EA  FAEK+GLSFIETSAL+STNVE AFQ ILTEIY IV
Sbjct:  108 ELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIV 176          
BLAST of CX300691 vs. ExPASy Swiss-Prot
Match: RB11A_PONAB (Ras-related protein Rab-11A OS=Pongo abelii GN=RAB11A PE=2 SV=3)

HSP 1 Score: 116.316 bits (290), Expect = 4.812e-26
Identity = 60/69 (86.96%), Postives = 63/69 (91.30%), Query Frame = 2
Query:    2 ELRDHADSNIVIMLVGNKSDLRHLRAVSTEEASQFAEKHGLSFIETSALESTNVEEAFQQILTEIYNIV 208
            ELRDHADSNIVIMLVGNKSDLRHLRAV T+EA  FAEK+GLSFIETSAL+STNVE AFQ ILTEIY IV
Sbjct:  108 ELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIV 176          
BLAST of CX300691 vs. ExPASy Swiss-Prot
Match: RB11A_PIG (Ras-related protein Rab-11A OS=Sus scrofa GN=RAB11A PE=2 SV=3)

HSP 1 Score: 116.316 bits (290), Expect = 4.812e-26
Identity = 60/69 (86.96%), Postives = 63/69 (91.30%), Query Frame = 2
Query:    2 ELRDHADSNIVIMLVGNKSDLRHLRAVSTEEASQFAEKHGLSFIETSALESTNVEEAFQQILTEIYNIV 208
            ELRDHADSNIVIMLVGNKSDLRHLRAV T+EA  FAEK+GLSFIETSAL+STNVE AFQ ILTEIY IV
Sbjct:  108 ELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIV 176          
BLAST of CX300691 vs. ExPASy Swiss-Prot
Match: RB11A_MOUSE (Ras-related protein Rab-11A OS=Mus musculus GN=Rab11a PE=1 SV=3)

HSP 1 Score: 116.316 bits (290), Expect = 4.812e-26
Identity = 60/69 (86.96%), Postives = 63/69 (91.30%), Query Frame = 2
Query:    2 ELRDHADSNIVIMLVGNKSDLRHLRAVSTEEASQFAEKHGLSFIETSALESTNVEEAFQQILTEIYNIV 208
            ELRDHADSNIVIMLVGNKSDLRHLRAV T+EA  FAEK+GLSFIETSAL+STNVE AFQ ILTEIY IV
Sbjct:  108 ELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIV 176          
BLAST of CX300691 vs. ExPASy Swiss-Prot
Match: RB11A_HUMAN (Ras-related protein Rab-11A OS=Homo sapiens GN=RAB11A PE=1 SV=3)

HSP 1 Score: 116.316 bits (290), Expect = 4.812e-26
Identity = 60/69 (86.96%), Postives = 63/69 (91.30%), Query Frame = 2
Query:    2 ELRDHADSNIVIMLVGNKSDLRHLRAVSTEEASQFAEKHGLSFIETSALESTNVEEAFQQILTEIYNIV 208
            ELRDHADSNIVIMLVGNKSDLRHLRAV T+EA  FAEK+GLSFIETSAL+STNVE AFQ ILTEIY IV
Sbjct:  108 ELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIV 176          
BLAST of CX300691 vs. ExPASy Swiss-Prot
Match: RB11A_CHICK (Ras-related protein Rab-11A OS=Gallus gallus GN=RAB11A PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 4.812e-26
Identity = 60/69 (86.96%), Postives = 63/69 (91.30%), Query Frame = 2
Query:    2 ELRDHADSNIVIMLVGNKSDLRHLRAVSTEEASQFAEKHGLSFIETSALESTNVEEAFQQILTEIYNIV 208
            ELRDHADSNIVIMLVGNKSDLRHLRAV T+EA  FAEK+GLSFIETSAL+STNVE AFQ ILTEIY IV
Sbjct:  108 ELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIV 176          
BLAST of CX300691 vs. ExPASy Swiss-Prot
Match: RB11A_CANFA (Ras-related protein Rab-11A OS=Canis familiaris GN=RAB11A PE=2 SV=3)

HSP 1 Score: 116.316 bits (290), Expect = 4.812e-26
Identity = 60/69 (86.96%), Postives = 63/69 (91.30%), Query Frame = 2
Query:    2 ELRDHADSNIVIMLVGNKSDLRHLRAVSTEEASQFAEKHGLSFIETSALESTNVEEAFQQILTEIYNIV 208
            ELRDHADSNIVIMLVGNKSDLRHLRAV T+EA  FAEK+GLSFIETSAL+STNVE AFQ ILTEIY IV
Sbjct:  108 ELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRIV 176          
BLAST of CX300691 vs. ExPASy Swiss-Prot
Match: RB11B_RAT (Ras-related protein Rab-11B OS=Rattus norvegicus GN=Rab11b PE=2 SV=4)

HSP 1 Score: 115.161 bits (287), Expect = 1.072e-25
Identity = 59/69 (85.51%), Postives = 63/69 (91.30%), Query Frame = 2
Query:    2 ELRDHADSNIVIMLVGNKSDLRHLRAVSTEEASQFAEKHGLSFIETSALESTNVEEAFQQILTEIYNIV 208
            ELRDHADSNIVIMLVGNKSDLRHLRAV T+EA  FAEK+ LSFIETSAL+STNVEEAF+ ILTEIY IV
Sbjct:  108 ELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIV 176          
The following BLAST results are available for this feature:
BLAST of CX300691 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 61
Match NameE-valueIdentityDescription
YPTC6_CHLRE3.684e-2665.98Ras-related protein YPTC6 OS=Chlamydomonas reinhar... [more]
RB11A_RAT4.812e-2686.96Ras-related protein Rab-11A OS=Rattus norvegicus G... [more]
RB11A_RABIT4.812e-2686.96Ras-related protein Rab-11A OS=Oryctolagus cunicul... [more]
RB11A_PONAB4.812e-2686.96Ras-related protein Rab-11A OS=Pongo abelii GN=RAB... [more]
RB11A_PIG4.812e-2686.96Ras-related protein Rab-11A OS=Sus scrofa GN=RAB11... [more]
RB11A_MOUSE4.812e-2686.96Ras-related protein Rab-11A OS=Mus musculus GN=Rab... [more]
RB11A_HUMAN4.812e-2686.96Ras-related protein Rab-11A OS=Homo sapiens GN=RAB... [more]
RB11A_CHICK4.812e-2686.96Ras-related protein Rab-11A OS=Gallus gallus GN=RA... [more]
RB11A_CANFA4.812e-2686.96Ras-related protein Rab-11A OS=Canis familiaris GN... [more]
RB11B_RAT1.072e-2585.51Ras-related protein Rab-11B OS=Rattus norvegicus G... [more]

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Properties
Property NameValue
Genbank descriptionC08001B11SK PhyRootSw1 Citrus sinensis cDNA clone C08001B11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300691 ID=CX300691; Name=CX300691; organism=Citrus sinensis; type=EST; length=392bp
TGAACTCCGAGATCACGCTGACAGCAATATTGTTATTATGCTTGTTGGTA
ATAAGAGCGATCTCAGACATTTACGAGCTGTTTCTACTGAGGAAGCTTCT
CAATTCGCTGAAAAGCACGGACTTTCATTTATTGAAACTTCTGCTCTCGA
ATCTACTAATGTAGAGGAAGCTTTCCAACAAATCTTAACTGAAATTTATA
ACATTGTTGGAACTGGTACTGGACGAACTGGTGGTGGTGCTGAACCAAAG
AAAGAGGAAATTGGTGGCGGAGGAGCAAAACTCGTTTTGGACGCAGGGGG
CCAAAATCCTGGTGGTGCAAATGAAGGAAAGAAGGGCGGATGCTGTGGAT
AAAACTATCCTCAGTATTTATTTTTAATTATTTGGCCATTTT
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