CX300690

Overview
NameCX300690
Unique NameCX300690
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length402
Libraries
Library NameType
PhyRootSw1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1895 contig Csv1_Contig1895:518..918. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX300690 vs. ExPASy Swiss-Prot
Match: ZFP1_WHEAT (Zinc finger protein 1 OS=Triticum aestivum PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.786e-13
Identity = 43/101 (42.57%), Postives = 47/101 (46.53%), Query Frame = 1 
Query:   52 RTHECSICHKSFPTGQALGGHKRCHYDGG-----------EKXXXXXXXXXXXXXXXXXRDFDLNLPVLPEL------SPAFFVSGDDEVESPLPAKKPRL 303
            R H CSIC K FPTGQALGGHKR HYDGG                              R FDLN+P +PE               D+EV+SPL  KKPRL
Sbjct:  158 RVHRCSICQKEFPTGQALGGHKRKHYDGGVGAAASSTELLAAAAAESEVGSTGNGSSAARAFDLNIPAVPEFVWRPCAKGKMMWEDDEEVQSPLAFKKPRL 258
The following BLAST results are available for this feature:
BLAST of CX300690 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
ZFP1_WHEAT2.786e-1342.57Zinc finger protein 1 OS=Triticum aestivum PE=2 SV... [more]
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Properties
Property NameValue
Genbank descriptionC08001B09SK PhyRootSw1 Citrus sinensis cDNA clone C08001B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300690 ID=CX300690; Name=CX300690; organism=Citrus sinensis; type=EST; length=402bp
ACCAACACCAACGCAACCGCCACGACCACCGGCGTACCGAACGCCACTGG
TAGGACCCACGAGTGTTCCATCTGTCACAAGTCCTTCCCCACTGGCCAAG
CCTTGGGCGGACACAAACGTTGTCACTACGATGGCGGCGAGAAGAGCGGA
GTGACGTCATCCGGATCCAGTAGCACTCACAGCCAAGTCAGCCACCGTGA
CTTTGACCTCAACCTCCCTGTCTTACCGGAGCTCTCCCCTGCTTTCTTCG
TCTCCGGTGATGACGAGGTGGAGAGTCCACTGCCGGCGAAGAAGCCCCGT
CTTTTCTTGCCCCCCAAAATCGAAGTTTAATTTACTTAATTGCCACTTTT
TTTTTTTGTTTTTGGGCTACTTTTAAGGATGTTAAGTTTAGGCAAATTTA
TT
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