CN188339

Overview
NameCN188339
Unique NameCN188339
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length745
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2560 contig Csv1_Contig2560:1..745. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188339 vs. ExPASy Swiss-Prot
Match: HSP70_SOYBN (Heat shock 70 kDa protein OS=Glycine max GN=HSP70 PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.994e-41
Identity = 96/172 (55.81%), Postives = 109/172 (63.37%), Query Frame = -1
Query:  236 DANGILHVSAEDKTAGVKNQITITNDKGRLSKEEIERMVQXXXXXXXXXXXXXXXXXXKNSLENYAYNMRNTVRDEKFAGKLDPADKQKIEKAIDEAIEWLDGNQXXXXXXXXXXXXXXXXLCNPIIAKMYQG--GASGDVPMXXXXXXXXXXXXXXXXXXXXXGPKIEEVD 745
            DANGIL+VSAEDKTAGVKN+ITITNDKGRLSKEEIE+MV+                  KNSLENYAYNMRNT++DEK  GKL P +KQKIEKA+++AI+WL+GNQ                +CNPIIAKMYQG  G  GDVPM                     GPKIEEVD
Sbjct:  486 DANGILNVSAEDKTAGVKNKITITNDKGRLSKEEIEKMVKDAERYKAEDEEVKKKVEAKNSLENYAYNMRNTIKDEKIGGKLSPDEKQKIEKAVEDAIQWLEGNQMAEVDEFEDKQKELEGICNPIIAKMYQGAAGPGGDVPM------------GADMPAAGAGPKIEEVD 645          
BLAST of CN188339 vs. ExPASy Swiss-Prot
Match: HSP72_ARATH (Heat shock cognate 70 kDa protein 2 OS=Arabidopsis thaliana GN=HSC70-2 PE=2 SV=2)

HSP 1 Score: 158.688 bits (400), Expect = 3.098e-38
Identity = 90/170 (52.94%), Postives = 103/170 (60.59%), Query Frame = -1
Query:  236 DANGILHVSAEDKTAGVKNQITITNDKGRLSKEEIERMVQXXXXXXXXXXXXXXXXXXKNSLENYAYNMRNTVRDEKFAGKLDPADKQKIEKAIDEAIEWLDGNQXXXXXXXXXXXXXXXXLCNPIIAKMYQGGASGDVPMXXXXXXXXXXXXXXXXXXXXXGPKIEEVD 745
            DANGIL+VSAEDKT G KN+ITITNDKGRLSKE+IE+MVQ                  KN+LENYAYNMRNT+RDEK   KL  ADK+K+E +I+EAI+WLDGNQ                +CNPIIAKMYQGGA G+                        GPKIEEVD
Sbjct:  487 DANGILNVSAEDKTTGKKNKITITNDKGRLSKEDIEKMVQEAEKYKSEDEEHKKKVEAKNALENYAYNMRNTIRDEKIGEKLPAADKKKVEDSIEEAIQWLDGNQLGEADEFEDKMKELESVCNPIIAKMYQGGAGGEA---GGPGASGMDEDEAPPASGGAGPKIEEVD 653          
BLAST of CN188339 vs. ExPASy Swiss-Prot
Match: HSP7C_PETHY (Heat shock cognate 70 kDa protein OS=Petunia hybrida GN=HSP70 PE=2 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 2.622e-37
Identity = 82/137 (59.85%), Postives = 93/137 (67.88%), Query Frame = -1
Query:  335 DANGILHVSAEDKTAGVKNQITITNDKGRLSKEEIERMVQXXXXXXXXXXXXXXXXXXKNSLENYAYNMRNTVRDEKFAGKLDPADKQKIEKAIDEAIEWLDGNQXXXXXXXXXXXXXXXXLCNPIIAKMYQGGASG 745
            DANGIL+VSAEDKT G KN+ITITNDKGRLSKEEIERMVQ                  KN+LENYAYNMRNT++D+K   +L  ADK++IE AIDEAI+WLD NQ                +CNPIIAKMYQGGA G
Sbjct:  487 DANGILNVSAEDKTTGQKNKITITNDKGRLSKEEIERMVQEAEKYKSEDEELKKKVEAKNALENYAYNMRNTIKDDKINSQLSAADKKRIEDAIDEAIKWLDNNQLAEADEFEDKMKELESICNPIIAKMYQGGAGG 623          
BLAST of CN188339 vs. ExPASy Swiss-Prot
Match: HSP71_SOLLC (Heat shock cognate 70 kDa protein 1 OS=Solanum lycopersicum GN=HSC-I PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.302e-36
Identity = 91/171 (53.22%), Postives = 100/171 (58.48%), Query Frame = -1
Query:  236 DANGILHVSAEDKTAGVKNQITITNDKGRLSKEEIERMVQXXXXXXXXXXXXXXXXXXKNSLENYAYNMRNTVRDEKFAGKLDPADKQKIEKAIDEAIEWLDGNQXXXXXXXXXXXXXXXXLCNPIIAKMYQG-GASGDVPMXXXXXXXXXXXXXXXXXXXXXGPKIEEVD 745
            DANGIL+VSAEDKT G KN+ITITNDKGRLSKEEIE+MVQ                  KNSLENYAYNMRNTV+DEK   KL   DK+KIE A+D+AI WL+ NQ                +CNPIIAKMYQG G    VPM                     GPKIEEVD
Sbjct:  489 DANGILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKMVQEAEKYKAEDEELKKKVEAKNSLENYAYNMRNTVKDEKIGSKLSSDDKKKIEDAVDQAISWLESNQLAEVDEFEDKMKELEGICNPIIAKMYQGAGGDAGVPM---------DDDAPPSGGSSAGPKIEEVD 650          
BLAST of CN188339 vs. ExPASy Swiss-Prot
Match: HSP7E_SPIOL (Chloroplast envelope membrane 70 kDa heat shock-related protein OS=Spinacia oleracea GN=SCE70 PE=1 SV=3)

HSP 1 Score: 150.599 bits (379), Expect = 8.436e-36
Identity = 82/139 (58.99%), Postives = 93/139 (66.91%), Query Frame = -1
Query:  329 DANGILHVSAEDKTAGVKNQITITNDKGRLSKEEIERMVQXXXXXXXXXXXXXXXXXXKNSLENYAYNMRNTVRDEKFAGKLDPADKQKIEKAIDEAIEWLDGNQXXXXXXXXXXXXXXXXLCNPIIAKMYQGGASGDV 745
            DANGIL+VSAEDKT G KN+I ITNDKGRLSKEEIE+MVQ                  KN+LENYAYNMRN V+DEK   KL  ADK+KIE+AID +I+WLDGNQ                +CNPIIAKMYQ GA GD+
Sbjct:  487 DANGILNVSAEDKTTGQKNKIRITNDKGRLSKEEIEKMVQEAEKYKSEDEEHKKKVESKNALENYAYNMRNIVKDEKIGAKLSEADKKKIEEAIDASIQWLDGNQLAEADEFDDKMKELESICNPIIAKMYQ-GAGGDM 624          
BLAST of CN188339 vs. ExPASy Swiss-Prot
Match: HSP72_SOLLC (Heat shock cognate 70 kDa protein 2 OS=Solanum lycopersicum GN=HSC-2 PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 8.436e-36
Identity = 90/170 (52.94%), Postives = 101/170 (59.41%), Query Frame = -1
Query:  236 DANGILHVSAEDKTAGVKNQITITNDKGRLSKEEIERMVQXXXXXXXXXXXXXXXXXXKNSLENYAYNMRNTVRDEKFAGKLDPADKQKIEKAIDEAIEWLDGNQXXXXXXXXXXXXXXXXLCNPIIAKMYQGGASGDVPMXXXXXXXXXXXXXXXXXXXXXGPKIEEVD 745
            DANG L+VSAEDKT G KN+ITITNDKGRLSKEEIE+MVQ                  KN+LENYAYNMRNT++DEK A KL   D+ KIE AI++AI+WLDGNQ                LCNPIIAKMYQ GA GD+                       GPKIEEVD
Sbjct:  487 DANGTLNVSAEDKTTGQKNKITITNDKGRLSKEEIEKMVQEAEKYKSEDEEHKKKVEAKNALENYAYNMRNTIKDEKIASKLSADDRTKIEDAIEQAIQWLDGNQLAEAEEFEDKMKELESLCNPIIAKMYQ-GAGGDM-----------DDEGPAPSGGGAGPKIEEVD 644          
BLAST of CN188339 vs. ExPASy Swiss-Prot
Match: HSP70_DAUCA (Heat shock 70 kDa protein OS=Daucus carota GN=HSP70 PE=3 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.102e-35
Identity = 87/170 (51.18%), Postives = 104/170 (61.18%), Query Frame = -1
Query:  236 DANGILHVSAEDKTAGVKNQITITNDKGRLSKEEIERMVQXXXXXXXXXXXXXXXXXXKNSLENYAYNMRNTVRDEKFAGKLDPADKQKIEKAIDEAIEWLDGNQXXXXXXXXXXXXXXXXLCNPIIAKMYQGGASGDVPMXXXXXXXXXXXXXXXXXXXXXGPKIEEVD 745
            DANGIL+V AEDKTAGVKN+ITITND GRLSK+EIE++V+                  KN+LENYAYNMRNT++D+K  GKLD  DK+KIE A++EAIEWL+ NQ                LCNPIIA++YQG   GDVP+                     GPKIEEVD
Sbjct:  489 DANGILNVFAEDKTAGVKNKITITNDNGRLSKDEIEKLVKEAEKYKAEDEEVKKKVEAKNALENYAYNMRNTIKDDKIPGKLDAGDKEKIETAVNEAIEWLEKNQLAEVDELEDKLKELEGLCNPIIARLYQG--RGDVPI-GGPGDMPGGGYGGSRGSSGAGPKIEEVD 655          
BLAST of CN188339 vs. ExPASy Swiss-Prot
Match: HSP73_ARATH (Heat shock cognate 70 kDa protein 3 OS=Arabidopsis thaliana GN=HSC70-3 PE=1 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 4.187e-35
Identity = 79/137 (57.66%), Postives = 91/137 (66.42%), Query Frame = -1
Query:  335 DANGILHVSAEDKTAGVKNQITITNDKGRLSKEEIERMVQXXXXXXXXXXXXXXXXXXKNSLENYAYNMRNTVRDEKFAGKLDPADKQKIEKAIDEAIEWLDGNQXXXXXXXXXXXXXXXXLCNPIIAKMYQGGASG 745
            DANGIL+VSAEDKT G KN+ITITNDKGRLSK+EIE+MVQ                  KN+LENYAYNMRNT+RDEK   KL   DK+KIE +I+ AIEWL+ NQ                +CNPIIAKMYQGG +G
Sbjct:  487 DANGILNVSAEDKTTGQKNKITITNDKGRLSKDEIEKMVQEAEKYKSEDEEHKKKVDAKNALENYAYNMRNTIRDEKIGEKLAGDDKKKIEDSIEAAIEWLEANQLAECDEFEDKMKELESICNPIIAKMYQGGEAG 623          
BLAST of CN188339 vs. ExPASy Swiss-Prot
Match: HSP71_ARATH (Heat shock cognate 70 kDa protein 1 OS=Arabidopsis thaliana GN=HSC70-1 PE=1 SV=3)

HSP 1 Score: 148.288 bits (373), Expect = 4.187e-35
Identity = 91/181 (50.28%), Postives = 105/181 (58.01%), Query Frame = -1
Query:  236 DANGILHVSAEDKTAGVKNQITITNDKGRLSKEEIERMVQXXXXXXXXXXXXXXXXXXKNSLENYAYNMRNTVRDEKFAGKLDPADKQKIEKAIDEAIEWLDGNQXXXXXXXXXXXXXXXXLCNPIIAKMYQG--------GASG---DVPMXXXXXXXXXXXXXXXXXXXXXGPKIEEVD 745
            DANGIL+VSAEDKT G KN+ITITNDKGRLSK+EIE+MVQ                  KN+LENYAYNMRNT++DEK   KL  ADK+KIE +I++AI+WL+GNQ                +CNPIIAKMYQG        GASG   D P                      GPKIEEVD
Sbjct:  487 DANGILNVSAEDKTTGQKNKITITNDKGRLSKDEIEKMVQEAEKYKSEDEEHKKKVEAKNALENYAYNMRNTIQDEKIGEKLPAADKKKIEDSIEQAIQWLEGNQLAEADEFEDKMKELESICNPIIAKMYQGAGGEAGGPGASGMDDDAP----------------PASGGAGPKIEEVD 651          
BLAST of CN188339 vs. ExPASy Swiss-Prot
Match: HSP70_MAIZE (Heat shock 70 kDa protein OS=Zea mays GN=HSP70 PE=3 SV=2)

HSP 1 Score: 143.28 bits (360), Expect = 1.347e-33
Identity = 76/137 (55.47%), Postives = 87/137 (63.50%), Query Frame = -1
Query:  335 DANGILHVSAEDKTAGVKNQITITNDKGRLSKEEIERMVQXXXXXXXXXXXXXXXXXXKNSLENYAYNMRNTVRDEKFAGKLDPADKQKIEKAIDEAIEWLDGNQXXXXXXXXXXXXXXXXLCNPIIAKMYQGGASG 745
            D N IL+VSAEDKT G KN+ITITNDKGRLSKEEIE+MVQ                  KN+LENYAYNMRNT++D+K A KL   DK+KIE A+D AI WLD NQ                +CNPIIAKMY G  +G
Sbjct:  483 DVNNILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKMVQEAEKYKAEDEEVKKKVDAKNALENYAYNMRNTIKDDKIASKLPAEDKKKIEDAVDGAISWLDSNQLAEVEEFEDKMKELEGICNPIIAKMYXGEGAG 619          
The following BLAST results are available for this feature:
BLAST of CN188339 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 165
Match NameE-valueIdentityDescription
HSP70_SOYBN2.994e-4155.81Heat shock 70 kDa protein OS=Glycine max GN=HSP70 ... [more]
HSP72_ARATH3.098e-3852.94Heat shock cognate 70 kDa protein 2 OS=Arabidopsis... [more]
HSP7C_PETHY2.622e-3759.85Heat shock cognate 70 kDa protein OS=Petunia hybri... [more]
HSP71_SOLLC1.302e-3653.22Heat shock cognate 70 kDa protein 1 OS=Solanum lyc... [more]
HSP7E_SPIOL8.436e-3658.99Chloroplast envelope membrane 70 kDa heat shock-re... [more]
HSP72_SOLLC8.436e-3652.94Heat shock cognate 70 kDa protein 2 OS=Solanum lyc... [more]
HSP70_DAUCA1.102e-3551.18Heat shock 70 kDa protein OS=Daucus carota GN=HSP7... [more]
HSP73_ARATH4.187e-3557.66Heat shock cognate 70 kDa protein 3 OS=Arabidopsis... [more]
HSP71_ARATH4.187e-3550.28Heat shock cognate 70 kDa protein 1 OS=Arabidopsis... [more]
HSP70_MAIZE1.347e-3355.47Heat shock 70 kDa protein OS=Zea mays GN=HSP70 PE=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005N24_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005N24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188339 ID=CN188339; Name=CN188339; organism=Citrus sinensis; type=EST; length=745bp
TTTTTTTTTTTTTTTTTAGAGCTCAAATTTTTATTGTAATTTGATATTCA
AGTAAACTATAGGTACATAGCAGAGCATTCAGACAACTATAGATTACATC
ACTATAGTAACATGAGTAACCCCTCAAACCTAATGTATATCATACACAGG
TATTCGCCCTCGAGCATCAGCAAAAACGGAGCCACAACAGATGAGTCCCA
AAACAGAGCACTCTATGACTCTCATTCATGCCTTAGTCAACTTCCTCAAT
CTTAGGTCCGCCACCTGCACCGCCAGTCTCTGCCTTGCCATGGCCGCCTC
CCGGCATCTCGGCACCACCACCCATCGGTACGTCCCCACTAGCCCCGCCT
TGATACATCTTTGCAATAATTGGGTTGCACAAGCCTTCCAACTCCTTCAA
CTTGTCCTCCAATTCATCAACCTCAGCCAATTGGTTCCCATCAAGCCACT
CAATAGCCTCATCAATGGCCTTCTCTATCTTCTGCTTGTCAGCCGGGTCT
AGTTTTCCCGCAAACTTCTCATCTCTCACAGTGTTCCTCATGTTATAAGC
ATAATTCTCCAATGAGTTCTTGGCCTCTACTTTCTTCTTTACCTCTTCAT
CCTCTGCCTTGTACTTCTCTGCCTCTTGCACCATTCTCTCAATTTCCTCC
TTGCTCAATCTTCCCTTATCGTTGGTGATTGTAATCTGGTTCTTCACTCC
AGCAGTCTTATCTTCTGCGGAGACATGCAATATACCATTAGCATC
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