CN188338

Overview
NameCN188338
Unique NameCN188338
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length650
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8219 contig Csv1_Contig8219:39..688. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CN188338 vs. ExPASy Swiss-Prot
Match: TSJT1_TOBAC (Stem-specific protein TSJT1 OS=Nicotiana tabacum GN=TSJT1 PE=2 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.021e-28
Identity = 65/149 (43.62%), Postives = 92/149 (61.74%), Query Frame = 3 
Query:  102 MLGVFSSAIVSPPEELVA--AGSRTPSPKTTSTALVDRFLQANSSAVSVQVGDNVTLAYTHQNESPLRQRSFAVKDEIFCLFEGALDNLGSLRQQYGLAKSANEVILVIEAYKALRDRAPYPPNHVVGHLSGYFAFIVYDKSTSTLFVA 542
            ML VF  +I  PP EL    AG +    KT    + + F      +    + +   +A++H NE+PL+ RS  V D++FC+F GALDN   LR+ YGL++ A E ++++EAYK LRDRAPYPP+ V+  L G FAFI++D   STLF+A
Sbjct:    1 MLAVFEQSIGRPPPELSLPQAGIQKKEAKTREE-IAESFKTWKQDSTFYHLFNGNFMAFSHGNENPLQPRSIVVMDDVFCIFSGALDNTFDLRKHYGLSRQATEAMIMVEAYKVLRDRAPYPPDQVIKELEGKFAFILFDSKASTLFLA 148
The following BLAST results are available for this feature:
BLAST of CN188338 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TSJT1_TOBAC1.021e-2843.62Stem-specific protein TSJT1 OS=Nicotiana tabacum G... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0005N23_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005N23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188338 ID=CN188338; Name=CN188338; organism=Citrus sinensis; type=EST; length=650bp
ATTTTAAAGCCAAAGAGTTCCGAACGGATCAAAGTTTTCTTGTAGGAGAG
AGAAATTTCTAGGGCGAGAAAGCGAGAGAAAAGGAAATTTGGTAGCTTAA
AATGTTGGGAGTGTTCAGCAGCGCGATCGTTTCACCTCCAGAGGAGCTGG
TGGCGGCCGGAAGCCGGACTCCGTCGCCGAAGACCACATCGACGGCACTG
GTCGACCGTTTCCTCCAGGCCAACTCGTCTGCTGTGTCCGTACAGGTCGG
GGACAACGTCACCCTCGCGTACACTCATCAGAACGAGTCTCCTTTACGGC
AAAGATCATTTGCTGTGAAAGATGAGATCTTCTGCTTGTTTGAGGGAGCA
CTTGATAACTTGGGAAGCCTGAGGCAGCAATATGGACTAGCTAAGTCGGC
AAATGAAGTGATCTTGGTGATTGAGGCATACAAGGCTCTGCGTGATCGGG
CCCCTTACCCACCGAACCATGTCGTTGGCCACCTTAGTGGGTACTTTGCC
TTCATTGTCTACGACAAGTCCACCTCCACCTTGTTTGTGGCTTCTGACCA
ATTTGGTAAGGTTCCTCTTTATTGGGGAATCACTGCTGATGGACATGTTG
CCTTTGCTGATGATGCTGACTTGCTCAAAGGTGCTTGCGGCAAGTCACTT
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