CN188333

Overview
NameCN188333
Unique NameCN188333
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length749
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4022 contig Csv1_Contig4022:2..750. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188333 vs. ExPASy Swiss-Prot
Match: HSP70_SOYBN (Heat shock 70 kDa protein OS=Glycine max GN=HSP70 PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 3.023e-33
Identity = 71/147 (48.30%), Postives = 98/147 (66.67%), Query Frame = -2
Query:  305 IPKVRNLVQSTCKKVELYEGINPLEAAVSGAALEGAVTSGINDPFGNLDLLTIQVTPLGIGIRANGNNFVPIIPRNTTMPARKDLVFTTVRDNQSEALIIVYEGEGEKVEENHLLGYFKITGIPPSPKGVPEINVCMDIDASSVLRV 745
            IPKV  L+Q      EL + INP EA   GAA++ A+ SG  D     DLL + VTPL +G+   G     +IPRNTT+P +K+ +F+T  DNQ   LI V+EGE  + ++N+LLG F++TGIPP+P+GVP++NVC DIDA+ +L V
Sbjct:  348 IPKVHQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGQGDEKVQ-DLLLLDVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQIFSTYSDNQPGVLIQVFEGERARTKDNNLLGKFELTGIPPAPRGVPQVNVCFDIDANGILNV 493          
BLAST of CN188333 vs. ExPASy Swiss-Prot
Match: HSP71_ARATH (Heat shock cognate 70 kDa protein 1 OS=Arabidopsis thaliana GN=HSC70-1 PE=1 SV=3)

HSP 1 Score: 141.739 bits (356), Expect = 3.948e-33
Identity = 72/147 (48.98%), Postives = 99/147 (67.35%), Query Frame = -2
Query:  305 IPKVRNLVQSTCKKVELYEGINPLEAAVSGAALEGAVTSGINDPFGNLDLLTIQVTPLGIGIRANGNNFVPIIPRNTTMPARKDLVFTTVRDNQSEALIIVYEGEGEKVEENHLLGYFKITGIPPSPKGVPEINVCMDIDASSVLRV 745
            IPKV+ L+Q      EL + INP EA   GAA++GA+ SG  +     DLL + VTPL +G+   G     +IPRNTT+P +K+ VF+T  DNQ   LI VYEGE  + ++N+LLG F+++GIPP+P+GVP+I VC DIDA+ +L V
Sbjct:  349 IPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQGAILSGEGNEKVQ-DLLLLDVTPLSLGLETAGGVMTTLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNV 494          
BLAST of CN188333 vs. ExPASy Swiss-Prot
Match: HSP7E_SPIOL (Chloroplast envelope membrane 70 kDa heat shock-related protein OS=Spinacia oleracea GN=SCE70 PE=1 SV=3)

HSP 1 Score: 140.584 bits (353), Expect = 8.795e-33
Identity = 72/147 (48.98%), Postives = 97/147 (65.99%), Query Frame = -2
Query:  305 IPKVRNLVQSTCKKVELYEGINPLEAAVSGAALEGAVTSGINDPFGNLDLLTIQVTPLGIGIRANGNNFVPIIPRNTTMPARKDLVFTTVRDNQSEALIIVYEGEGEKVEENHLLGYFKITGIPPSPKGVPEINVCMDIDASSVLRV 745
            IPKV+ L+Q      EL + INP EA   GAA++ A+ SG  +     DLL + VTPL +G+   G     +IPRNTT+P +K+ VF+T  DNQ   LI VYEGE  +  +N+LLG F+++GIPP P+GVP+INVC DIDA+ +L V
Sbjct:  349 IPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQ-DLLLLDVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPGPRGVPQINVCFDIDANGILNV 494          
BLAST of CN188333 vs. ExPASy Swiss-Prot
Match: HSP7C_PETHY (Heat shock cognate 70 kDa protein OS=Petunia hybrida GN=HSP70 PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.149e-32
Identity = 71/147 (48.30%), Postives = 98/147 (66.67%), Query Frame = -2
Query:  305 IPKVRNLVQSTCKKVELYEGINPLEAAVSGAALEGAVTSGINDPFGNLDLLTIQVTPLGIGIRANGNNFVPIIPRNTTMPARKDLVFTTVRDNQSEALIIVYEGEGEKVEENHLLGYFKITGIPPSPKGVPEINVCMDIDASSVLRV 745
            IPKV+ L+Q      EL + INP EA   GAA++ A+ SG  +     DLL + VTPL +G+   G     +IPRNTT+P +K+ VF+T  DNQ   LI VYEGE  + ++N+LLG F+++GIPP+P+GVP+I VC DIDA+ +L V
Sbjct:  349 IPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQ-DLLLLDVTPLSLGLETAGGGMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNV 494          
BLAST of CN188333 vs. ExPASy Swiss-Prot
Match: HSP70_CHLRE (Heat shock 70 kDa protein OS=Chlamydomonas reinhardtii GN=HSP70 PE=2 SV=2)

HSP 1 Score: 137.887 bits (346), Expect = 5.701e-32
Identity = 73/160 (45.62%), Postives = 101/160 (63.12%), Query Frame = -2
Query:  266 IPKVRNLVQSTCKKVELYEGINPLEAAVSGAALEGAVTSGINDPFGNLDLLTIQVTPLGIGIRANGNNFVPIIPRNTTMPARKDLVFTTVRDNQSEALIIVYEGEGEKVEENHLLGYFKITGIPPSPKGVPEINVCMDIDASSVLRVLVGVIMPGNPHPV 745
            IPKV+ L+Q      EL + INP EA   GAA++ A+ +G        DLL + VTPL +G+   G     +IPRNTT+P +K+ VF+T  DNQ   LI VYEGE  + ++N+LLG F++TGIPP+P+GVP+INV  DIDA+ +L V       GN + +
Sbjct:  349 IPKVQQLLQDFFNGKELNKSINPDEAVAYGAAVQAAILTGEGGEKVQ-DLLLLDVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERARTKDNNLLGKFELTGIPPAPRGVPQINVIFDIDANGILNVSAEDKTTGNKNKI 507          
BLAST of CN188333 vs. ExPASy Swiss-Prot
Match: HSP72_SOLLC (Heat shock cognate 70 kDa protein 2 OS=Solanum lycopersicum GN=HSC-2 PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 7.446e-32
Identity = 71/147 (48.30%), Postives = 96/147 (65.31%), Query Frame = -2
Query:  305 IPKVRNLVQSTCKKVELYEGINPLEAAVSGAALEGAVTSGINDPFGNLDLLTIQVTPLGIGIRANGNNFVPIIPRNTTMPARKDLVFTTVRDNQSEALIIVYEGEGEKVEENHLLGYFKITGIPPSPKGVPEINVCMDIDASSVLRV 745
            IPKV+ L+Q      EL + INP EA   GAA++ A+ SG  +     DLL + VTPL +G+   G     +IPRNTT+P +K+ VF+T  DNQ   LI VYEGE  +  +N+LLG F+++GIPP+P+GVP+I VC DIDA+  L V
Sbjct:  349 IPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQ-DLLLLDVTPLSLGLETAGGVMTVLIPRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERTRTRDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGTLNV 494          
BLAST of CN188333 vs. ExPASy Swiss-Prot
Match: HSP72_ARATH (Heat shock cognate 70 kDa protein 2 OS=Arabidopsis thaliana GN=HSC70-2 PE=2 SV=2)

HSP 1 Score: 134.806 bits (338), Expect = 4.826e-31
Identity = 69/147 (46.94%), Postives = 97/147 (65.99%), Query Frame = -2
Query:  305 IPKVRNLVQSTCKKVELYEGINPLEAAVSGAALEGAVTSGINDPFGNLDLLTIQVTPLGIGIRANGNNFVPIIPRNTTMPARKDLVFTTVRDNQSEALIIVYEGEGEKVEENHLLGYFKITGIPPSPKGVPEINVCMDIDASSVLRV 745
            IPKV+ L+Q      EL + INP EA   GAA++ A+ SG  +     DLL + VTPL +G+   G     +I RNTT+P +K+ VF+T  DNQ   LI V+EGE  + ++N+LLG F+++GIPP+P+GVP+I VC DIDA+ +L V
Sbjct:  349 IPKVQQLLQDFFNGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQ-DLLLLDVTPLSLGLETAGGVMTTLIQRNTTIPTKKEQVFSTYSDNQPGVLIQVFEGERARTKDNNLLGKFELSGIPPAPRGVPQITVCFDIDANGILNV 494          
BLAST of CN188333 vs. ExPASy Swiss-Prot
Match: HSP72_RAT (Heat shock-related 70 kDa protein 2 OS=Rattus norvegicus GN=Hspa2 PE=2 SV=2)

HSP 1 Score: 134.42 bits (337), Expect = 6.303e-31
Identity = 71/148 (47.97%), Postives = 95/148 (64.19%), Query Frame = -2
Query:  305 IPKVRNLVQSTCKKVELYEGINPLEAAVSGAALEGAVTSGINDPFGNL-DLLTIQVTPLGIGIRANGNNFVPIIPRNTTMPARKDLVFTTVRDNQSEALIIVYEGEGEKVEENHLLGYFKITGIPPSPKGVPEINVCMDIDASSVLRV 745
            IPK++ L+Q      EL + INP EA   GAA++ A+  G  D   N+ DLL + VTPL +GI   G    P+I RNTT+P ++   FTT  DNQS  L+ VYEGE    ++N+LLG F +TGIPP+P+GVP+I V  DIDA+ +L V
Sbjct:  346 IPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILIG--DKSENVQDLLLLDVTPLSLGIETAGGVMTPLIKRNTTIPTKQTQTFTTYSDNQSSVLVQVYEGERAMTKDNNLLGKFDLTGIPPAPRGVPQIEVTFDIDANGILNV 491          
BLAST of CN188333 vs. ExPASy Swiss-Prot
Match: HSP72_MOUSE (Heat shock-related 70 kDa protein 2 OS=Mus musculus GN=Hspa2 PE=1 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 6.303e-31
Identity = 71/148 (47.97%), Postives = 95/148 (64.19%), Query Frame = -2
Query:  305 IPKVRNLVQSTCKKVELYEGINPLEAAVSGAALEGAVTSGINDPFGNL-DLLTIQVTPLGIGIRANGNNFVPIIPRNTTMPARKDLVFTTVRDNQSEALIIVYEGEGEKVEENHLLGYFKITGIPPSPKGVPEINVCMDIDASSVLRV 745
            IPK++ L+Q      EL + INP EA   GAA++ A+  G  D   N+ DLL + VTPL +GI   G    P+I RNTT+P ++   FTT  DNQS  L+ VYEGE    ++N+LLG F +TGIPP+P+GVP+I V  DIDA+ +L V
Sbjct:  346 IPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILIG--DKSENVQDLLLLDVTPLSLGIETAGGVMTPLIKRNTTIPTKQTQTFTTYSDNQSSVLVQVYEGERAMTKDNNLLGKFDLTGIPPAPRGVPQIEVTFDIDANGILNV 491          
BLAST of CN188333 vs. ExPASy Swiss-Prot
Match: HSP72_HUMAN (Heat shock-related 70 kDa protein 2 OS=Homo sapiens GN=HSPA2 PE=1 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 6.303e-31
Identity = 71/148 (47.97%), Postives = 95/148 (64.19%), Query Frame = -2
Query:  305 IPKVRNLVQSTCKKVELYEGINPLEAAVSGAALEGAVTSGINDPFGNL-DLLTIQVTPLGIGIRANGNNFVPIIPRNTTMPARKDLVFTTVRDNQSEALIIVYEGEGEKVEENHLLGYFKITGIPPSPKGVPEINVCMDIDASSVLRV 745
            IPK++ L+Q      EL + INP EA   GAA++ A+  G  D   N+ DLL + VTPL +GI   G    P+I RNTT+P ++   FTT  DNQS  L+ VYEGE    ++N+LLG F +TGIPP+P+GVP+I V  DIDA+ +L V
Sbjct:  346 IPKIQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILIG--DKSENVQDLLLLDVTPLSLGIETAGGVMTPLIKRNTTIPTKQTQTFTTYSDNQSSVLVQVYEGERAMTKDNNLLGKFDLTGIPPAPRGVPQIEVTFDIDANGILNV 491          
The following BLAST results are available for this feature:
BLAST of CN188333 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
HSP70_SOYBN3.023e-3348.30Heat shock 70 kDa protein OS=Glycine max GN=HSP70 ... [more]
HSP71_ARATH3.948e-3348.98Heat shock cognate 70 kDa protein 1 OS=Arabidopsis... [more]
HSP7E_SPIOL8.795e-3348.98Chloroplast envelope membrane 70 kDa heat shock-re... [more]
HSP7C_PETHY1.149e-3248.30Heat shock cognate 70 kDa protein OS=Petunia hybri... [more]
HSP70_CHLRE5.701e-3245.63Heat shock 70 kDa protein OS=Chlamydomonas reinhar... [more]
HSP72_SOLLC7.446e-3248.30Heat shock cognate 70 kDa protein 2 OS=Solanum lyc... [more]
HSP72_ARATH4.826e-3146.94Heat shock cognate 70 kDa protein 2 OS=Arabidopsis... [more]
HSP72_RAT6.303e-3147.97Heat shock-related 70 kDa protein 2 OS=Rattus norv... [more]
HSP72_MOUSE6.303e-3147.97Heat shock-related 70 kDa protein 2 OS=Mus musculu... [more]
HSP72_HUMAN6.303e-3147.97Heat shock-related 70 kDa protein 2 OS=Homo sapien... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0005N21_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005N21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188333 ID=CN188333; Name=CN188333; organism=Citrus sinensis; type=EST; length=749bp
TTTTTNTTTTTTTTTTTCATCAAAACAGCCTCTATTATTTCTTTATGATG
CAAACTCACAAAGTAAATTTTTCTGAAGGATACAGACTCATATGCATACA
ACGCTTGAAAATATTAAAAAGCAATCAAATTTCAAGACACCATTACATTT
TCTTCGGCTGCACTGTCTCAAGGTCTAGAGTGGATCCATAAGCCCTGTTT
AGAGCTTCAGCACACCAGCCATGTCCATCATCAACCGTTGGCAGTCTCAC
TTCCATTACAGGAATCACTGGATGTGGGTTGCCAGGCATAATGACCCCAA
CCAAAACTCTCAGCACACTCGAGGCATCAATGTCCATGCACACATTTATT
TCTGGTACTCCTTTGGGAGAGGGAGGAATTCCTGTTATCTTGAAATAGCC
TAGAAGATGATTCTCTTCTACCTTCTCCCCTTCACCTTCATAAACAATAA
TCAGCGCCTCAGACTGGTTGTCGCGAACTGTTGTGAAGACCAGATCTTTC
CGTGCTGGCATCGTGGTGTTTCTAGGAATGATGGGTACAAAGTTGTTGCC
ATTAGCTCGTATACCAATGCCAAGTGGTGTGACTTGGATGGTTAACAGGT
CCAGGTTCCCAAATGGATCGTTAATGCCTGAAGTCACTGCTCCTTCCAGA
GCTGCCCCACTAACTGCTGCTTCCAATGGGTTAATACCCTCATAGAGTTC
TACTTTTTTGCATGTACTCTGGACAAGATTCCTTACTTTTGGAATATAT
back to top