CN188331

Overview
NameCN188331
Unique NameCN188331
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length779
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2655 contig Csv1_Contig2655:825..1603. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188331 vs. ExPASy Swiss-Prot
Match: MTNA_DESHY (Methylthioribose-1-phosphate isomerase OS=Desulfitobacterium hafniense (strain Y51) GN=mtnA PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.458e-33
Identity = 76/114 (66.67%), Postives = 88/114 (77.19%), Query Frame = -1
Query:  432 LMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGVVT 773
            LM+ G +  VIVGADR+AANGDTANKIGTYSLA+ A  H I FYVAAP ++IDL + SGQ+I IEER+ KEL   R   G QVA   + V+NPAFDVTPA LITGIITEKG+VT
Sbjct:  221 LMQQGNIDLVIVGADRIAANGDTANKIGTYSLAVLAHAHGIPFYVAAPTSTIDLKVPSGQDIPIEERNPKEL---REVFGVQVAPPEVPVYNPAFDVTPAKLITGIITEKGIVT 331          
BLAST of CN188331 vs. ExPASy Swiss-Prot
Match: MTNA_DESHD (Methylthioribose-1-phosphate isomerase OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=mtnA PE=3 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.458e-33
Identity = 76/114 (66.67%), Postives = 88/114 (77.19%), Query Frame = -1
Query:  432 LMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGVVT 773
            LM+ G +  VIVGADR+AANGDTANKIGTYSLA+ A  H I FYVAAP ++IDL + SGQ+I IEER+ KEL   R   G QVA   + V+NPAFDVTPA LITGIITEKG+VT
Sbjct:  221 LMQQGNIDLVIVGADRIAANGDTANKIGTYSLAVLAHAHGIPFYVAAPTSTIDLKVPSGQDIPIEERNPKEL---REVFGVQVAPPEVPVYNPAFDVTPAKLITGIITEKGIVT 331          
BLAST of CN188331 vs. ExPASy Swiss-Prot
Match: MTNA_XENTR (Methylthioribose-1-phosphate isomerase OS=Xenopus tropicalis GN=mri1 PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 9.342e-33
Identity = 73/114 (64.04%), Postives = 88/114 (77.19%), Query Frame = -1
Query:  438 AALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGV 779
            +A ++D +V+AV+VGADRV ANGDTANKIGTY LA+ A++H I FYVAAP TS DL+L +G  IVIEER + EL       G ++AA GI VWNPAFDVTP  LITGIITE+GV
Sbjct:  230 SAAIRDRKVTAVVVGADRVVANGDTANKIGTYQLAITARYHGIPFYVAAPSTSCDLSLPTGGSIVIEERPSHELTDIN---GVRIAAPGIGVWNPAFDVTPHELITGIITERGV 340          
BLAST of CN188331 vs. ExPASy Swiss-Prot
Match: MTNA_XENLA (Methylthioribose-1-phosphate isomerase OS=Xenopus laevis GN=mri1 PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.594e-32
Identity = 73/111 (65.77%), Postives = 86/111 (77.48%), Query Frame = -1
Query:  438 MKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGV 770
            M++ +V+AV+VGADRV ANGDTANKIGTY LA+ AK+H I FYVAAP TS DL+L +G  IVIEER + EL       G ++AA GI VWNPAFDVTP  LITGIITE+GV
Sbjct:  233 MRERKVTAVVVGADRVVANGDTANKIGTYQLAIIAKYHGIPFYVAAPSTSCDLSLPTGGSIVIEERPSHELTDIN---GIRIAAPGIDVWNPAFDVTPHELITGIITERGV 340          
BLAST of CN188331 vs. ExPASy Swiss-Prot
Match: MTNA_PELTS (Methylthioribose-1-phosphate isomerase OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=mtnA PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.301e-31
Identity = 68/113 (60.18%), Postives = 87/113 (76.99%), Query Frame = -1
Query:  435 LMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGVV 773
            L+  G+   V+VGADR+AANGD ANKIGTYSLA+ A+ H I FYVAAP+++IDL+L+SG+EI IEER + E+       G  VA  G++VWNPAFDVTPA LIT IIT++G+V
Sbjct:  223 LLAKGKADLVVVGADRIAANGDVANKIGTYSLAVLAREHKIPFYVAAPVSTIDLSLASGEEIPIEERDSSEVTHL---AGRPVAPEGVNVWNPAFDVTPARLITAIITDRGIV 332          
BLAST of CN188331 vs. ExPASy Swiss-Prot
Match: MTNA_SOLUE (Methylthioribose-1-phosphate isomerase OS=Solibacter usitatus (strain Ellin6076) GN=mtnA PE=3 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.925e-31
Identity = 69/111 (62.16%), Postives = 87/111 (78.38%), Query Frame = -1
Query:  438 MKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGV 770
            MK GR+  V+VGADR+AANGD ANK+GTYS+A+ AK + + FYVAAP++++DLTLSSG++I IEERSA E+       G  VA +G +V NPAFDVTPA  +TGIITEKGV
Sbjct:  220 MKAGRIGCVVVGADRIAANGDVANKVGTYSVAVLAKENGVPFYVAAPISTLDLTLSSGEQIPIEERSAAEV---THVFGHAVAPAGTAVKNPAFDVTPARYVTGIITEKGV 327          
BLAST of CN188331 vs. ExPASy Swiss-Prot
Match: MTNA_RHOBA (Methylthioribose-1-phosphate isomerase OS=Rhodopirellula baltica GN=mtnA PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 5.126e-31
Identity = 69/116 (59.48%), Postives = 85/116 (73.28%), Query Frame = -1
Query:  429 ALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKGVVTK 776
            +LM+ GRV AVIVGADR+AANGD ANKIGTY LA+ AK+HNI FYVAAP  + D  L SG  I IE+RSA E+    G    +    G++V NPAFDVTPA L+T +ITEKGV+++
Sbjct:  229 SLMRQGRVDAVIVGADRIAANGDVANKIGTYPLAVLAKYHNIPFYVAAPTNTFDSELESGDLIPIEQRSADEVSYPCGTDSPRQTPEGVAVVNPAFDVTPAELVTALITEKGVISE 344          
BLAST of CN188331 vs. ExPASy Swiss-Prot
Match: MTNA_RAT (Methylthioribose-1-phosphate isomerase OS=Rattus norvegicus GN=Mri1 PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 8.744e-31
Identity = 76/115 (66.09%), Postives = 85/115 (73.91%), Query Frame = -1
Query:  438 AALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLIT-GIITEKGV 779
            AA M    VSAV+VGADRV ANGDTANKIGTY LA+ AK H I FYVAAP +S DL L +G+EIVIEER ++EL       G ++AA GI VWNPAFDVTP  LIT GIITE GV
Sbjct:  232 AAAMVHQGVSAVVVGADRVVANGDTANKIGTYQLAIVAKHHGIPFYVAAPSSSCDLRLETGKEIVIEERPSQELTDLN---GVRIAAQGIRVWNPAFDVTPHELITGGIITELGV 343          
BLAST of CN188331 vs. ExPASy Swiss-Prot
Match: MTNA_MOUSE (Methylthioribose-1-phosphate isomerase OS=Mus musculus GN=Mri1 PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.142e-30
Identity = 75/115 (65.22%), Postives = 85/115 (73.91%), Query Frame = -1
Query:  438 AALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLIT-GIITEKGV 779
            AA M    VSAV+VGADRV ANGDTANKIGTY LA+ AK H + FYVAAP +S DL L +G+EIVIEER ++EL       G ++AA GI VWNPAFDVTP  LIT GIITE GV
Sbjct:  232 AAAMAHRGVSAVVVGADRVVANGDTANKIGTYQLAIVAKHHGVPFYVAAPSSSCDLHLETGKEIVIEERPSQELTDLN---GVRIAAQGIRVWNPAFDVTPHELITGGIITELGV 343          
BLAST of CN188331 vs. ExPASy Swiss-Prot
Match: MTNA_HUMAN (Methylthioribose-1-phosphate isomerase OS=Homo sapiens GN=MRI1 PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.142e-30
Identity = 74/115 (64.35%), Postives = 85/115 (73.91%), Query Frame = -1
Query:  438 AALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLIT-GIITEKGV 779
            AA M    VSAV+VGADRV ANGDTANK+GTY LA+ AK H I FYVAAP +S DL L +G+EI+IEER  +EL       G ++AA GI VWNPAFDVTP +LIT GIITE GV
Sbjct:  232 AAAMAHRGVSAVVVGADRVVANGDTANKVGTYQLAIVAKHHGIPFYVAAPSSSCDLRLETGKEIIIEERPGQELTDVN---GVRIAAPGIGVWNPAFDVTPHDLITGGIITELGV 343          
The following BLAST results are available for this feature:
BLAST of CN188331 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 216
Match NameE-valueIdentityDescription
MTNA_DESHY2.458e-3366.67Methylthioribose-1-phosphate isomerase OS=Desulfit... [more]
MTNA_DESHD2.458e-3366.67Methylthioribose-1-phosphate isomerase OS=Desulfit... [more]
MTNA_XENTR9.342e-3364.04Methylthioribose-1-phosphate isomerase OS=Xenopus ... [more]
MTNA_XENLA1.594e-3265.77Methylthioribose-1-phosphate isomerase OS=Xenopus ... [more]
MTNA_PELTS2.301e-3160.18Methylthioribose-1-phosphate isomerase OS=Pelotoma... [more]
MTNA_SOLUE3.925e-3162.16Methylthioribose-1-phosphate isomerase OS=Solibact... [more]
MTNA_RHOBA5.126e-3159.48Methylthioribose-1-phosphate isomerase OS=Rhodopir... [more]
MTNA_RAT8.744e-3166.09Methylthioribose-1-phosphate isomerase OS=Rattus n... [more]
MTNA_MOUSE1.142e-3065.22Methylthioribose-1-phosphate isomerase OS=Mus musc... [more]
MTNA_HUMAN1.142e-3064.35Methylthioribose-1-phosphate isomerase OS=Homo sap... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005N20_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005N20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188331 ID=CN188331; Name=CN188331; organism=Citrus sinensis; type=EST; length=779bp
TTTTTTTTTTTTTTTTTAAATTATTAGATATATTATAATTTTTCAATTAC
TCAAACAATAATATCCCTAGAAGAAATAAAAAAAAGCGAGGATTAAATAC
ACACGACTGGTACTCTCCGATCCACTTTCTAATTTGAACTTGTCCTATAA
GAGTTCTATTTTTACTTCAAATAATTATAATGTTTGCACTTAGCTGCCAG
ATTAACCAAAAAAATACATGCCTGCAATCATCACAACAACAGGGAGTCTA
AAGCAGCGAGATACAATGTTCCTTCCCACAGATCTTCGCCCAGGCTGGAG
AACTTCATTTCTTGTTTAAATTTACAAGGGTACACTTCATCCGGTTAAAA
ATCACCTTCTTTTGCATCAGAGCCTCAGGCTGTCTTTTGTATGAAATCCT
TTATGTCAAAAGCATCATCAGCACCTGCCTTTGTAACGACACCCTTTTCT
GTTATAATTCCAGTGATCAAATTAGCTGGGGTAACATCAAAAGCCGGATT
CCAGACAGAGATTCCAGATGCAGCTACTTGTTCACCAAGTCCTCCTCGAG
AGCACAACAATTCTTTAGCAGACCTCTCCTCTATGACAATCTCTTGTCCA
GAAGAAAGGGTTAAATCAATTGACGTCAGTGGAGCAGCCACATAAAACAG
AATATTATGAAACTTTGCACATAATGCAAGGCTGTAGGTTCCAATCTTGT
TAGCAGTGTCACCATTTGCAGCCACTCGATCTGCTCCGACAATGACAGCA
CTCACACGACCATCTTTCATCAATGCAGC
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