CN188324
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN188324 vs. ExPASy Swiss-Prot
Match: PGDH_MOUSE (15-hydroxyprostaglandin dehydrogenase [NAD+] OS=Mus musculus GN=Hpgd PE=2 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 8.968e-15 Identity = 52/156 (33.33%), Postives = 80/156 (51.28%), Query Frame = -3 Query: 359 RSWRFTLDVNLVAVIDCTQKAIGIM--QAAKKPGVIINMGSSAGLYPFYTDPIYSASKGGVVLFTRS---LTPYKSKGIRINVLCPEFVETELA------------LKAGSQLIDLMG--GFVPMDTVVKGAFELITDESKAGSCLWITNRRGMEY 769 ++W TL +NLV+VI T + M Q + G+IINM S AGL P P+Y ASK G++ FTRS G+R+NV+CP FV+T + ++ Q+ +M G + T+ G LI D++ G+ + IT +G+ + Sbjct: 98 KNWEQTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAGLMPVAQQPVYCASKHGIIGFTRSAAMAANLMKSGVRLNVICPGFVDTPILESIEKEENMGQYIEYKDQIKAMMKFYGVLHPSTIANGLINLIEDDALNGAIMKITASKGIHF 253
BLAST of CN188324 vs. ExPASy Swiss-Prot
Match: PGDH_CAVPO (15-hydroxyprostaglandin dehydrogenase [NAD+] OS=Cavia porcellus GN=HPGD PE=2 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.998e-14 Identity = 51/156 (32.69%), Postives = 78/156 (50.00%), Query Frame = -3 Query: 359 RSWRFTLDVNLVAVIDCTQKAIGIM--QAAKKPGVIINMGSSAGLYPFYTDPIYSASKGGVVLFTRSLTPYK---SKGIRINVLCPEFVETELA------------LKAGSQLIDLMG--GFVPMDTVVKGAFELITDESKAGSCLWITNRRGMEY 769 ++W TL +NLV+VI T + M Q + GVIINM S AGL P P+Y ASK G++ FTRS + + G+R+N +CP FV T + ++ + D+M G + + + G LI D+ G+ + IT G+ + Sbjct: 98 KNWEKTLQINLVSVISGTYLGLDYMSKQHGGEGGVIINMSSLAGLMPVAQQPVYCASKHGIIGFTRSAAMARKLMNSGVRMNAICPGFVNTSILQSIEKEENMGPYIEYTGHIKDMMKCYGILDPEMIANGLITLIEDDDLNGAIMKITTSNGIHF 253
BLAST of CN188324 vs. ExPASy Swiss-Prot
Match: PGDH_BOVIN (15-hydroxyprostaglandin dehydrogenase [NAD+] OS=Bos taurus GN=HPGD PE=2 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 4.451e-14 Identity = 51/156 (32.69%), Postives = 77/156 (49.36%), Query Frame = -3 Query: 359 RSWRFTLDVNLVAVIDCTQKAIGIM--QAAKKPGVIINMGSSAGLYPFYTDPIYSASKGGVVLFTRS---LTPYKSKGIRINVLCPEFVETELALKAGSQ-----LIDLMG---------GFVPMDTVVKGAFELITDESKAGSCLWITNRRGMEY 769 ++W TL +NLV+VI T + M Q + G+ INM S AGL P P+Y ASK G+V FTRS + G+R+N +CP FV+T + + I+ MG G + + G LI D++ G+ + IT +G+ + Sbjct: 98 KNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGININMSSLAGLMPVAQQPVYCASKHGIVGFTRSAAMAANLMNSGVRLNAICPGFVDTPILKSIEKEENMGKYIEYMGPIKDMMKYYGILDPSMIANGLITLIEDDALNGAIMKITTSKGIHF 253
BLAST of CN188324 vs. ExPASy Swiss-Prot
Match: PGDH_RAT (15-hydroxyprostaglandin dehydrogenase [NAD+] OS=Rattus norvegicus GN=Hpgd PE=2 SV=2) HSP 1 Score: 77.7962 bits (190), Expect = 7.591e-14 Identity = 50/156 (32.05%), Postives = 79/156 (50.64%), Query Frame = -3 Query: 359 RSWRFTLDVNLVAVIDCTQKAIGIM--QAAKKPGVIINMGSSAGLYPFYTDPIYSASKGGVVLFTRS---LTPYKSKGIRINVLCPEFVETELA------------LKAGSQLIDLMG--GFVPMDTVVKGAFELITDESKAGSCLWITNRRGMEY 769 ++W TL +NLV+VI T + M Q + G+IIN+ S AGL P P+Y ASK G++ FTRS G+R+NV+CP FV+T + ++ Q+ +M G + + G LI D++ G+ + IT +G+ + Sbjct: 98 KNWEQTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINISSIAGLMPVAQQPVYCASKHGIIGFTRSAAMAANLMKSGVRLNVICPGFVKTPILESIEKEENMGQYIEYTDQIKAMMKFYGILDPSAIANGLINLIEDDALNGAIMKITASKGIHF 253
BLAST of CN188324 vs. ExPASy Swiss-Prot
Match: PGDH_HUMAN (15-hydroxyprostaglandin dehydrogenase [NAD+] OS=Homo sapiens GN=HPGD PE=1 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 7.591e-14 Identity = 53/167 (31.74%), Postives = 84/167 (50.30%), Query Frame = -3 Query: 332 RSWRFTLDVNLVAVIDCTQKAIGIM--QAAKKPGVIINMGSSAGLYPFYTDPIYSASKGGVVLFTRS---LTPYKSKGIRINVLCPEFVETELA------------LKAGSQLIDLMG--GFVPMDTVVKGAFELITDESKAGSCLWITNRRGMEY--WPTSEEEAK 769 ++W TL +NLV+VI T + M Q + G+IINM S AGL P P+Y ASK G+V FTRS + G+R+N +CP FV T + ++ + D++ G + + G LI D++ G+ + IT +G+ + + T+ +AK Sbjct: 98 KNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAGLMPVAQQPVYCASKHGIVGFTRSAALAANLMNSGVRLNAICPGFVNTAILESIEKEENMGQYIEYKDHIKDMIKYYGILDPPLIANGLITLIEDDALNGAIMKITTSKGIHFQDYDTTPFQAK 264
BLAST of CN188324 vs. ExPASy Swiss-Prot
Match: PGDH_MACFA (15-hydroxyprostaglandin dehydrogenase [NAD+] OS=Macaca fascicularis GN=HPGD PE=2 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 9.915e-14 Identity = 50/156 (32.05%), Postives = 78/156 (50.00%), Query Frame = -3 Query: 359 RSWRFTLDVNLVAVIDCTQKAIGIM--QAAKKPGVIINMGSSAGLYPFYTDPIYSASKGGVVLFTRS---LTPYKSKGIRINVLCPEFVETELA------------LKAGSQLIDLMG--GFVPMDTVVKGAFELITDESKAGSCLWITNRRGMEY 769 ++W TL +NLV+VI T + M Q + G+IINM S AGL P P+Y ASK G+V FTRS + G+R+N +CP FV T + ++ + D++ G + + G LI D++ G+ + IT +G+ + Sbjct: 98 KNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAGLMPVAQQPVYCASKHGIVGFTRSAALAANLMNSGVRLNAICPGFVNTAILESIEKEENMGQYIEYKDHIKDMIKYYGILDPPLIANGLITLIEDDALNGAIMKITTSKGIHF 253 The following BLAST results are available for this feature:
BLAST of CN188324 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 6
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CN188324 ID=CN188324; Name=CN188324; organism=Citrus sinensis; type=EST; length=789bpback to top |