CN188324

Overview
NameCN188324
Unique NameCN188324
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length789
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188324 vs. ExPASy Swiss-Prot
Match: PGDH_MOUSE (15-hydroxyprostaglandin dehydrogenase [NAD+] OS=Mus musculus GN=Hpgd PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.968e-15
Identity = 52/156 (33.33%), Postives = 80/156 (51.28%), Query Frame = -3
Query:  359 RSWRFTLDVNLVAVIDCTQKAIGIM--QAAKKPGVIINMGSSAGLYPFYTDPIYSASKGGVVLFTRS---LTPYKSKGIRINVLCPEFVETELA------------LKAGSQLIDLMG--GFVPMDTVVKGAFELITDESKAGSCLWITNRRGMEY 769
            ++W  TL +NLV+VI  T   +  M  Q   + G+IINM S AGL P    P+Y ASK G++ FTRS          G+R+NV+CP FV+T +             ++   Q+  +M   G +   T+  G   LI D++  G+ + IT  +G+ +
Sbjct:   98 KNWEQTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAGLMPVAQQPVYCASKHGIIGFTRSAAMAANLMKSGVRLNVICPGFVDTPILESIEKEENMGQYIEYKDQIKAMMKFYGVLHPSTIANGLINLIEDDALNGAIMKITASKGIHF 253          
BLAST of CN188324 vs. ExPASy Swiss-Prot
Match: PGDH_CAVPO (15-hydroxyprostaglandin dehydrogenase [NAD+] OS=Cavia porcellus GN=HPGD PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.998e-14
Identity = 51/156 (32.69%), Postives = 78/156 (50.00%), Query Frame = -3
Query:  359 RSWRFTLDVNLVAVIDCTQKAIGIM--QAAKKPGVIINMGSSAGLYPFYTDPIYSASKGGVVLFTRSLTPYK---SKGIRINVLCPEFVETELA------------LKAGSQLIDLMG--GFVPMDTVVKGAFELITDESKAGSCLWITNRRGMEY 769
            ++W  TL +NLV+VI  T   +  M  Q   + GVIINM S AGL P    P+Y ASK G++ FTRS    +   + G+R+N +CP FV T +             ++    + D+M   G +  + +  G   LI D+   G+ + IT   G+ +
Sbjct:   98 KNWEKTLQINLVSVISGTYLGLDYMSKQHGGEGGVIINMSSLAGLMPVAQQPVYCASKHGIIGFTRSAAMARKLMNSGVRMNAICPGFVNTSILQSIEKEENMGPYIEYTGHIKDMMKCYGILDPEMIANGLITLIEDDDLNGAIMKITTSNGIHF 253          
BLAST of CN188324 vs. ExPASy Swiss-Prot
Match: PGDH_BOVIN (15-hydroxyprostaglandin dehydrogenase [NAD+] OS=Bos taurus GN=HPGD PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.451e-14
Identity = 51/156 (32.69%), Postives = 77/156 (49.36%), Query Frame = -3
Query:  359 RSWRFTLDVNLVAVIDCTQKAIGIM--QAAKKPGVIINMGSSAGLYPFYTDPIYSASKGGVVLFTRS---LTPYKSKGIRINVLCPEFVETELALKAGSQ-----LIDLMG---------GFVPMDTVVKGAFELITDESKAGSCLWITNRRGMEY 769
            ++W  TL +NLV+VI  T   +  M  Q   + G+ INM S AGL P    P+Y ASK G+V FTRS        + G+R+N +CP FV+T +      +      I+ MG         G +    +  G   LI D++  G+ + IT  +G+ +
Sbjct:   98 KNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGININMSSLAGLMPVAQQPVYCASKHGIVGFTRSAAMAANLMNSGVRLNAICPGFVDTPILKSIEKEENMGKYIEYMGPIKDMMKYYGILDPSMIANGLITLIEDDALNGAIMKITTSKGIHF 253          
BLAST of CN188324 vs. ExPASy Swiss-Prot
Match: PGDH_RAT (15-hydroxyprostaglandin dehydrogenase [NAD+] OS=Rattus norvegicus GN=Hpgd PE=2 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 7.591e-14
Identity = 50/156 (32.05%), Postives = 79/156 (50.64%), Query Frame = -3
Query:  359 RSWRFTLDVNLVAVIDCTQKAIGIM--QAAKKPGVIINMGSSAGLYPFYTDPIYSASKGGVVLFTRS---LTPYKSKGIRINVLCPEFVETELA------------LKAGSQLIDLMG--GFVPMDTVVKGAFELITDESKAGSCLWITNRRGMEY 769
            ++W  TL +NLV+VI  T   +  M  Q   + G+IIN+ S AGL P    P+Y ASK G++ FTRS          G+R+NV+CP FV+T +             ++   Q+  +M   G +    +  G   LI D++  G+ + IT  +G+ +
Sbjct:   98 KNWEQTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINISSIAGLMPVAQQPVYCASKHGIIGFTRSAAMAANLMKSGVRLNVICPGFVKTPILESIEKEENMGQYIEYTDQIKAMMKFYGILDPSAIANGLINLIEDDALNGAIMKITASKGIHF 253          
BLAST of CN188324 vs. ExPASy Swiss-Prot
Match: PGDH_HUMAN (15-hydroxyprostaglandin dehydrogenase [NAD+] OS=Homo sapiens GN=HPGD PE=1 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 7.591e-14
Identity = 53/167 (31.74%), Postives = 84/167 (50.30%), Query Frame = -3
Query:  332 RSWRFTLDVNLVAVIDCTQKAIGIM--QAAKKPGVIINMGSSAGLYPFYTDPIYSASKGGVVLFTRS---LTPYKSKGIRINVLCPEFVETELA------------LKAGSQLIDLMG--GFVPMDTVVKGAFELITDESKAGSCLWITNRRGMEY--WPTSEEEAK 769
            ++W  TL +NLV+VI  T   +  M  Q   + G+IINM S AGL P    P+Y ASK G+V FTRS        + G+R+N +CP FV T +             ++    + D++   G +    +  G   LI D++  G+ + IT  +G+ +  + T+  +AK
Sbjct:   98 KNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAGLMPVAQQPVYCASKHGIVGFTRSAALAANLMNSGVRLNAICPGFVNTAILESIEKEENMGQYIEYKDHIKDMIKYYGILDPPLIANGLITLIEDDALNGAIMKITTSKGIHFQDYDTTPFQAK 264          
BLAST of CN188324 vs. ExPASy Swiss-Prot
Match: PGDH_MACFA (15-hydroxyprostaglandin dehydrogenase [NAD+] OS=Macaca fascicularis GN=HPGD PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 9.915e-14
Identity = 50/156 (32.05%), Postives = 78/156 (50.00%), Query Frame = -3
Query:  359 RSWRFTLDVNLVAVIDCTQKAIGIM--QAAKKPGVIINMGSSAGLYPFYTDPIYSASKGGVVLFTRS---LTPYKSKGIRINVLCPEFVETELA------------LKAGSQLIDLMG--GFVPMDTVVKGAFELITDESKAGSCLWITNRRGMEY 769
            ++W  TL +NLV+VI  T   +  M  Q   + G+IINM S AGL P    P+Y ASK G+V FTRS        + G+R+N +CP FV T +             ++    + D++   G +    +  G   LI D++  G+ + IT  +G+ +
Sbjct:   98 KNWEKTLQINLVSVISGTYLGLDYMSKQNGGEGGIIINMSSLAGLMPVAQQPVYCASKHGIVGFTRSAALAANLMNSGVRLNAICPGFVNTAILESIEKEENMGQYIEYKDHIKDMIKYYGILDPPLIANGLITLIEDDALNGAIMKITTSKGIHF 253          
The following BLAST results are available for this feature:
BLAST of CN188324 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
PGDH_MOUSE8.968e-1533.3315-hydroxyprostaglandin dehydrogenase [NAD+] OS=Mu... [more]
PGDH_CAVPO1.998e-1432.6915-hydroxyprostaglandin dehydrogenase [NAD+] OS=Ca... [more]
PGDH_BOVIN4.451e-1432.6915-hydroxyprostaglandin dehydrogenase [NAD+] OS=Bo... [more]
PGDH_RAT7.591e-1432.0515-hydroxyprostaglandin dehydrogenase [NAD+] OS=Ra... [more]
PGDH_HUMAN7.591e-1431.7415-hydroxyprostaglandin dehydrogenase [NAD+] OS=Ho... [more]
PGDH_MACFA9.915e-1432.0515-hydroxyprostaglandin dehydrogenase [NAD+] OS=Ma... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0005N16_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005N16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188324 ID=CN188324; Name=CN188324; organism=Citrus sinensis; type=EST; length=789bp
CTTTTGAGAGACAAGCTCCTATTCAATCATGTCTCGATAAGGTAACAAGA
CATAAACTCGCATGATACTTGCATAAATTAAAAAAAAAAAAAACACACTC
TTCGCATATTAAATTGAGATCTTAGGTTATTGGTATGCCAGCTTCAGCTC
CGCTTTCACATTGCCAGACCAAATGAAAAACTAAATATTGCCTGAAATTA
TAGTCACCGAAAGAGTACAGAAGTTTTGACGTAGTTCACAGTTTCTCAAA
ACTTTCAGGAACTCGGACACTCAGATTCGAAGGAACCTGAGATGAGAATC
TTTTCATGGAACCTGAAGAGCTCACCGAGTATTTTGCTTCTTCTTCAGAG
GTGGGCCAATACTCCATGCCTCTCCGATTTGTAATCCATAAGCATGATCC
AGCTTTACTCTCGTCAGTAATAAGCTCAAAAGCACCTTTCACTACCGTAT
CCATAGGTACAAAGCCCCCCATCAGATCAATTAATTGGGAGCCCGCCTTT
AAGGCCAACTCAGTTTCAACAAACTCAGGGCAAAGCACGTTGATGCGAAT
TCCCTTGCTTTTGTAGGGAGTAAGTGATCTAGTAAATAAAACAACACCAC
CTTTGGAAGCAGAGTAGATTGGATCTGTGTAAAATGGATAAAGTCCTGCA
GAAGATCCCATATTTATAATCACTCCAGGCTTTTTTGCAGCTTGCATAAT
TCCAATCGCTTTCTGAGTGCAATCAATAACTGCAACCAAGTTCACATCAA
GAGTGAATCTCCATGAACGTGTGCCATCAGTTTGATCCT
back to top