CN188316

Overview
NameCN188316
Unique NameCN188316
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length724
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3315 contig Csv1_Contig3315:292..1016. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188316 vs. ExPASy Swiss-Prot
Match: SF3_HELAN (Pollen-specific protein SF3 OS=Helianthus annuus GN=SF3 PE=2 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.143e-42
Identity = 83/126 (65.87%), Postives = 99/126 (78.57%), Query Frame = -3
Query:  351 QLFKMTGSLDKSFEGTPKTVRVERSADQVTNS--RVSSMFAGTQDKCVACKKTVYPIEKVAVDGTSYHKACFRCTHGGCVISPSNYVAHEHRLYCRHHHNQLFKQKGNFSQLDNHEQVEAVTENAT 722
            QLFK TGSL+KSF+GTPK  + ER+  Q T S  R+SS F GT+DKC AC K VYPIE+V VDGT+YH+ACF+C HGGC ISPSNY+AHE RLYC+HHH QLFK+KGN+SQL+  E V A  E+ T
Sbjct:   65 QLFKRTGSLEKSFDGTPK-FKPERTFSQETQSANRLSSFFEGTRDKCNACAKIVYPIERVKVDGTAYHRACFKCCHGGCTISPSNYIAHEGRLYCKHHHIQLFKKKGNYSQLEVEETVAAPAESET 189          

HSP 2 Score: 78.5666 bits (192), Expect = 3.831e-14
Identity = 32/72 (44.44%), Postives = 46/72 (63.89%), Query Frame = -3
Query:  396 FAGTQDKCVACKKTVYPIEKVAVDGTSYHKACFRCTHGGCVISPSNYVAHEHRLYCRHHHNQLFKQKGNFSQ 611
            F GT  KC  C+KTVY ++K+  +   YHKACFRC H    +  SN+ + +  +YCRHH +QLFK+ G+  +
Sbjct:    4 FTGTTQKCTVCEKTVYLVDKLVANQRVYHKACFRCHHCNSTLKLSNFNSFDGVVYCRHHFDQLFKRTGSLEK 75          
BLAST of CN188316 vs. ExPASy Swiss-Prot
Match: XIRP2_MOUSE (Xin actin-binding repeat-containing protein 2 OS=Mus musculus GN=Xirp2 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.525e-15
Identity = 34/80 (42.50%), Postives = 50/80 (62.50%), Query Frame = -3
Query:  378 SMFAGTQDKCVACKKTVYPIEKVAVDGTSYHKACFRCTHGGCVISPSNYVAHEHRLYCRHHHNQLFKQKGNFSQLDNHEQ 617
            S F   ++ C+ C+KTVYP+E +  D  ++HK+CFRC H    +S  NY +   R+YC+ H  QLFK KGN+ +   H+Q
Sbjct: 3248 SAFLSDKEICIICQKTVYPMECLIADKQNFHKSCFRCHHCSSKLSLGNYASLHGRIYCKPHFKQLFKSKGNYDEGFGHKQ 3327          
BLAST of CN188316 vs. ExPASy Swiss-Prot
Match: LIMD2_MOUSE (LIM domain-containing protein 2 OS=Mus musculus GN=Limd2 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.456e-13
Identity = 38/104 (36.54%), Postives = 57/104 (54.81%), Query Frame = -3
Query:  354 VTNSRVSSMFAGTQDKCVACKKTVYPIEKVAVDGTSYHKACFRCTHGGCVISPSNYVAHEHRLYCRHHHNQLFKQKGNF---------SQLDNHEQVEAVTENA 638
            V  S+  S+ A  ++ C AC+KTVYP+E++  D   +H +CF C H    +S  +Y A     YCR H  QLFK KGN+          +L  H++V++ T+ A
Sbjct:   25 VQRSKSFSLRAQVKETCAACQKTVYPMERLVADKLIFHNSCFCCKHCHTKLSLGSYAAMHGEFYCRPHFQQLFKSKGNYDEGFGRKQHKELWAHKEVDSGTKTA 128          
BLAST of CN188316 vs. ExPASy Swiss-Prot
Match: LIMD2_BOVIN (LIM domain-containing protein 2 OS=Bos taurus GN=LIMD2 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.483e-13
Identity = 38/108 (35.19%), Postives = 58/108 (53.70%), Query Frame = -3
Query:  354 SADQVTNSRVSSMFAGTQDKCVACKKTVYPIEKVAVDGTSYHKACFRCTHGGCVISPSNYVAHEHRLYCRHHHNQLFKQKGNF---------SQLDNHEQVEAVTENA 650
            S+  V  S+  S+ A  ++ C AC+KTVYP+E++  D   +H +CF C H    +S  +Y A     YC+ H  QLFK KGN+          +L  H++V+  T+ A
Sbjct:   21 SSSTVQRSKSFSLRAQVKETCAACQKTVYPMERLVADKLIFHSSCFCCKHCHTKLSLGSYAALHGEFYCKPHFQQLFKSKGNYDEGFGRKQHKELWAHKEVDPGTKTA 128          
BLAST of CN188316 vs. ExPASy Swiss-Prot
Match: LIMD2_RAT (LIM domain-containing protein 2 OS=Rattus norvegicus GN=Limd2 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.243e-13
Identity = 37/104 (35.58%), Postives = 57/104 (54.81%), Query Frame = -3
Query:  354 VTNSRVSSMFAGTQDKCVACKKTVYPIEKVAVDGTSYHKACFRCTHGGCVISPSNYVAHEHRLYCRHHHNQLFKQKGNF---------SQLDNHEQVEAVTENA 638
            V  S+  S+ A  ++ C AC+KTVYP+E++  D   +H +CF C H    +S  +Y A     YC+ H  QLFK KGN+          +L  H++V++ T+ A
Sbjct:   25 VQRSKSFSLRAQVKETCAACQKTVYPMERLVADKLIFHNSCFCCKHCHTKLSLGSYAAMHGEFYCKPHFQQLFKSKGNYDEGFGRKQHKELWAHKEVDSGTKTA 128          
BLAST of CN188316 vs. ExPASy Swiss-Prot
Match: LIMA1_MOUSE (LIM domain and actin-binding protein 1 OS=Mus musculus GN=Lima1 PE=1 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 3.243e-13
Identity = 34/92 (36.96%), Postives = 56/92 (60.87%), Query Frame = -3
Query:  378 SADQVTNSRVSSMF-AGTQDKCVACKKTVYPIEKVAVDGTSYHKACFRCTHGGCVISPSNYVAHEHRLYCRHHHNQLFKQKGNFSQLDNHEQ 650
            S  + + S+ +  F A  ++ CV C+KTVYP+E++  +   +H +CFRC++    +S   Y +   R+YC+ H NQLFK KGN+ +   H+Q
Sbjct:  367 SLPESSPSKTAKKFQAPAKESCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFKSKGNYDEGFGHKQ 458          
BLAST of CN188316 vs. ExPASy Swiss-Prot
Match: LIMD2_HUMAN (LIM domain-containing protein 2 OS=Homo sapiens GN=LIMD2 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.236e-13
Identity = 39/119 (32.77%), Postives = 60/119 (50.42%), Query Frame = -3
Query:  354 EGTPKTVRVERSADQVTNSRVSSMFAGTQDKCVACKKTVYPIEKVAVDGTSYHKACFRCTHGGCVISPSNYVAHEHRLYCRHHHNQLFKQKGNF---------SQLDNHEQVEAVTENA 683
            + TP        +  V  S+  S+ A  ++ C AC+KTVYP+E++  D   +H +CF C H    +S  +Y A     YC+ H  QLFK KGN+          +L  H++V+  T+ A
Sbjct:    9 QATPSHDAKGGGSSTVQRSKSFSLRAQVKETCAACQKTVYPMERLVADKLIFHNSCFCCKHCHTKLSLGSYAALHGEFYCKPHFQQLFKSKGNYDEGFGRKQHKELWAHKEVDPGTKTA 127          
BLAST of CN188316 vs. ExPASy Swiss-Prot
Match: LIMA1_HUMAN (LIM domain and actin-binding protein 1 OS=Homo sapiens GN=LIMA1 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.102e-12
Identity = 34/101 (33.66%), Postives = 56/101 (55.45%), Query Frame = -3
Query:  384 PKTVRVERSADQVTNSR----VSSMFAGTQDKCVACKKTVYPIEKVAVDGTSYHKACFRCTHGGCVISPSNYVAHEHRLYCRHHHNQLFKQKGNFSQLDNH 674
            PK +  +  A  ++ S     +    A  ++ CV C+KTVYP+E++  +   +H +CFRC++    +S   Y +   R+YC+ H NQLFK KGN+ +   H
Sbjct:  358 PKPLSPDSRASSLSESSPPKAMKKFQAPARETCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFKSKGNYDEGFGH 458          
The following BLAST results are available for this feature:
BLAST of CN188316 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
SF3_HELAN1.143e-4265.87Pollen-specific protein SF3 OS=Helianthus annuus G... [more]
XIRP2_MOUSE4.525e-1542.50Xin actin-binding repeat-containing protein 2 OS=M... [more]
LIMD2_MOUSE1.456e-1336.54LIM domain-containing protein 2 OS=Mus musculus GN... [more]
LIMD2_BOVIN2.483e-1335.19LIM domain-containing protein 2 OS=Bos taurus GN=L... [more]
LIMD2_RAT3.243e-1335.58LIM domain-containing protein 2 OS=Rattus norvegic... [more]
LIMA1_MOUSE3.243e-1336.96LIM domain and actin-binding protein 1 OS=Mus musc... [more]
LIMD2_HUMAN4.236e-1332.77LIM domain-containing protein 2 OS=Homo sapiens GN... [more]
LIMA1_HUMAN2.102e-1233.66LIM domain and actin-binding protein 1 OS=Homo sap... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0005N11_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005N11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188316 ID=CN188316; Name=CN188316; organism=Citrus sinensis; type=EST; length=724bp
TTTTTTTTTTTTTTTTTACAACAAAATCATTGATTCAAATTTAGAAACAC
ACAGAAAACACATAGGCCATCCACATCATTTATTTAACGCTGAACAAACA
ACCTTTTAACCATTTGTCCATCCCGCGCTCACCTCAATAAAATTCAGGAA
AAAGAAAAAAACAAAAGAACTCAAACTCCTCTACTAAACAGTTGTCCCGT
AACATATTGCATTTATATAAAAGAAATAAAACCTCGATAGCTCTTCTTGT
ATGCTTCAACAGTTGGAAACATTTCTTGCTTGGAAACTCACAACCGAAGC
AATCACACATTGTCACATTAACAGAAGAAAATTTCACAGTATCACTAAGC
TGTTGCGTTCTCAGTCACCGCTTCAACTTGTTCATGGTTGTCAAGTTGGC
TGAAGTTACCCTTCTGCTTGAAAAGCTGATTGTGGTGATGCCTACAGTAG
AGACGATGCTCATGCGCCACATAGTTTGATGGGCTGATTACACAACCTCC
ATGGGTGCACCTGAAACAGGCTTTATGGTATGATGTACCATCAACTGCCA
CCTTTTCAATTGGGTAAACAGTCTTCTTGCAAGCAACGCATTTATCTTGA
GTTCCAGCAAACATACTTGAAACTCTGCTATTTGTGACCTGATCAGCAGA
TCTCTCAACTCTAACAGTTTTTGGAGTACCTTCAAAACTTTTATCCAAGC
TGCCAGTCATCTTAAACAGCTGAT
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