CN188316
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CN188316 vs. ExPASy Swiss-Prot
Match: SF3_HELAN (Pollen-specific protein SF3 OS=Helianthus annuus GN=SF3 PE=2 SV=1) HSP 1 Score: 173.326 bits (438), Expect = 1.143e-42 Identity = 83/126 (65.87%), Postives = 99/126 (78.57%), Query Frame = -3 Query: 351 QLFKMTGSLDKSFEGTPKTVRVERSADQVTNS--RVSSMFAGTQDKCVACKKTVYPIEKVAVDGTSYHKACFRCTHGGCVISPSNYVAHEHRLYCRHHHNQLFKQKGNFSQLDNHEQVEAVTENAT 722 QLFK TGSL+KSF+GTPK + ER+ Q T S R+SS F GT+DKC AC K VYPIE+V VDGT+YH+ACF+C HGGC ISPSNY+AHE RLYC+HHH QLFK+KGN+SQL+ E V A E+ T Sbjct: 65 QLFKRTGSLEKSFDGTPK-FKPERTFSQETQSANRLSSFFEGTRDKCNACAKIVYPIERVKVDGTAYHRACFKCCHGGCTISPSNYIAHEGRLYCKHHHIQLFKKKGNYSQLEVEETVAAPAESET 189 HSP 2 Score: 78.5666 bits (192), Expect = 3.831e-14 Identity = 32/72 (44.44%), Postives = 46/72 (63.89%), Query Frame = -3 Query: 396 FAGTQDKCVACKKTVYPIEKVAVDGTSYHKACFRCTHGGCVISPSNYVAHEHRLYCRHHHNQLFKQKGNFSQ 611 F GT KC C+KTVY ++K+ + YHKACFRC H + SN+ + + +YCRHH +QLFK+ G+ + Sbjct: 4 FTGTTQKCTVCEKTVYLVDKLVANQRVYHKACFRCHHCNSTLKLSNFNSFDGVVYCRHHFDQLFKRTGSLEK 75
BLAST of CN188316 vs. ExPASy Swiss-Prot
Match: XIRP2_MOUSE (Xin actin-binding repeat-containing protein 2 OS=Mus musculus GN=Xirp2 PE=1 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 4.525e-15 Identity = 34/80 (42.50%), Postives = 50/80 (62.50%), Query Frame = -3 Query: 378 SMFAGTQDKCVACKKTVYPIEKVAVDGTSYHKACFRCTHGGCVISPSNYVAHEHRLYCRHHHNQLFKQKGNFSQLDNHEQ 617 S F ++ C+ C+KTVYP+E + D ++HK+CFRC H +S NY + R+YC+ H QLFK KGN+ + H+Q Sbjct: 3248 SAFLSDKEICIICQKTVYPMECLIADKQNFHKSCFRCHHCSSKLSLGNYASLHGRIYCKPHFKQLFKSKGNYDEGFGHKQ 3327
BLAST of CN188316 vs. ExPASy Swiss-Prot
Match: LIMD2_MOUSE (LIM domain-containing protein 2 OS=Mus musculus GN=Limd2 PE=2 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.456e-13 Identity = 38/104 (36.54%), Postives = 57/104 (54.81%), Query Frame = -3 Query: 354 VTNSRVSSMFAGTQDKCVACKKTVYPIEKVAVDGTSYHKACFRCTHGGCVISPSNYVAHEHRLYCRHHHNQLFKQKGNF---------SQLDNHEQVEAVTENA 638 V S+ S+ A ++ C AC+KTVYP+E++ D +H +CF C H +S +Y A YCR H QLFK KGN+ +L H++V++ T+ A Sbjct: 25 VQRSKSFSLRAQVKETCAACQKTVYPMERLVADKLIFHNSCFCCKHCHTKLSLGSYAAMHGEFYCRPHFQQLFKSKGNYDEGFGRKQHKELWAHKEVDSGTKTA 128
BLAST of CN188316 vs. ExPASy Swiss-Prot
Match: LIMD2_BOVIN (LIM domain-containing protein 2 OS=Bos taurus GN=LIMD2 PE=2 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 2.483e-13 Identity = 38/108 (35.19%), Postives = 58/108 (53.70%), Query Frame = -3 Query: 354 SADQVTNSRVSSMFAGTQDKCVACKKTVYPIEKVAVDGTSYHKACFRCTHGGCVISPSNYVAHEHRLYCRHHHNQLFKQKGNF---------SQLDNHEQVEAVTENA 650 S+ V S+ S+ A ++ C AC+KTVYP+E++ D +H +CF C H +S +Y A YC+ H QLFK KGN+ +L H++V+ T+ A Sbjct: 21 SSSTVQRSKSFSLRAQVKETCAACQKTVYPMERLVADKLIFHSSCFCCKHCHTKLSLGSYAALHGEFYCKPHFQQLFKSKGNYDEGFGRKQHKELWAHKEVDPGTKTA 128
BLAST of CN188316 vs. ExPASy Swiss-Prot
Match: LIMD2_RAT (LIM domain-containing protein 2 OS=Rattus norvegicus GN=Limd2 PE=2 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 3.243e-13 Identity = 37/104 (35.58%), Postives = 57/104 (54.81%), Query Frame = -3 Query: 354 VTNSRVSSMFAGTQDKCVACKKTVYPIEKVAVDGTSYHKACFRCTHGGCVISPSNYVAHEHRLYCRHHHNQLFKQKGNF---------SQLDNHEQVEAVTENA 638 V S+ S+ A ++ C AC+KTVYP+E++ D +H +CF C H +S +Y A YC+ H QLFK KGN+ +L H++V++ T+ A Sbjct: 25 VQRSKSFSLRAQVKETCAACQKTVYPMERLVADKLIFHNSCFCCKHCHTKLSLGSYAAMHGEFYCKPHFQQLFKSKGNYDEGFGRKQHKELWAHKEVDSGTKTA 128
BLAST of CN188316 vs. ExPASy Swiss-Prot
Match: LIMA1_MOUSE (LIM domain and actin-binding protein 1 OS=Mus musculus GN=Lima1 PE=1 SV=2) HSP 1 Score: 75.485 bits (184), Expect = 3.243e-13 Identity = 34/92 (36.96%), Postives = 56/92 (60.87%), Query Frame = -3 Query: 378 SADQVTNSRVSSMF-AGTQDKCVACKKTVYPIEKVAVDGTSYHKACFRCTHGGCVISPSNYVAHEHRLYCRHHHNQLFKQKGNFSQLDNHEQ 650 S + + S+ + F A ++ CV C+KTVYP+E++ + +H +CFRC++ +S Y + R+YC+ H NQLFK KGN+ + H+Q Sbjct: 367 SLPESSPSKTAKKFQAPAKESCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFKSKGNYDEGFGHKQ 458
BLAST of CN188316 vs. ExPASy Swiss-Prot
Match: LIMD2_HUMAN (LIM domain-containing protein 2 OS=Homo sapiens GN=LIMD2 PE=1 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 4.236e-13 Identity = 39/119 (32.77%), Postives = 60/119 (50.42%), Query Frame = -3 Query: 354 EGTPKTVRVERSADQVTNSRVSSMFAGTQDKCVACKKTVYPIEKVAVDGTSYHKACFRCTHGGCVISPSNYVAHEHRLYCRHHHNQLFKQKGNF---------SQLDNHEQVEAVTENA 683 + TP + V S+ S+ A ++ C AC+KTVYP+E++ D +H +CF C H +S +Y A YC+ H QLFK KGN+ +L H++V+ T+ A Sbjct: 9 QATPSHDAKGGGSSTVQRSKSFSLRAQVKETCAACQKTVYPMERLVADKLIFHNSCFCCKHCHTKLSLGSYAALHGEFYCKPHFQQLFKSKGNYDEGFGRKQHKELWAHKEVDPGTKTA 127
BLAST of CN188316 vs. ExPASy Swiss-Prot
Match: LIMA1_HUMAN (LIM domain and actin-binding protein 1 OS=Homo sapiens GN=LIMA1 PE=1 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 2.102e-12 Identity = 34/101 (33.66%), Postives = 56/101 (55.45%), Query Frame = -3 Query: 384 PKTVRVERSADQVTNSR----VSSMFAGTQDKCVACKKTVYPIEKVAVDGTSYHKACFRCTHGGCVISPSNYVAHEHRLYCRHHHNQLFKQKGNFSQLDNH 674 PK + + A ++ S + A ++ CV C+KTVYP+E++ + +H +CFRC++ +S Y + R+YC+ H NQLFK KGN+ + H Sbjct: 358 PKPLSPDSRASSLSESSPPKAMKKFQAPARETCVECQKTVYPMERLLANQQVFHISCFRCSYCNNKLSLGTYASLHGRIYCKPHFNQLFKSKGNYDEGFGH 458 The following BLAST results are available for this feature:
BLAST of CN188316 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 8
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CN188316 ID=CN188316; Name=CN188316; organism=Citrus sinensis; type=EST; length=724bpback to top |