CN188308

Overview
NameCN188308
Unique NameCN188308
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length741
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12765 contig Csv1_Contig12765:37..777. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188308 vs. ExPASy Swiss-Prot
Match: HS26M_ARATH (26.5 kDa heat shock protein, mitochondrial OS=Arabidopsis thaliana GN=HSP26.5 PE=2 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 1.903e-56
Identity = 127/240 (52.92%), Postives = 159/240 (66.25%), Query Frame = 2
Query:   47 MALARLALRNVQQRVSTSSPSLANLHNNLGERSASTIGGVQRQKWSNELLKRFMATAAND-EKKQDREVAVTEKXXXXXXXXXXXXXXXXXNND------IPVLAEFFPSGLGNALMQATENINRIFENLNFTPSQLMGRVKEQDDCYKLRYDVPGLGKDDVKITIHDGVLTIKG--XXXXXXXXXXXXXXWSARSYGYYNTSLALPDDAKADEIKAELKNGVLNIVIPRTEKPKQDVKE 739
            MALARLALRN+QQ++S   PSL      +G+   S   G+   + +   L RFMAT+A + E K + EV+V+EK                  N        P L EFFP  +GN L+QATEN+NRIF+N N  P QLMG+VKEQDDCYKLRY+VPGL K+DVKIT++DG+LTIKG                WS++SYGYYNTSL+LPDDAK ++IKAELKNGVLN+VIPRTEKPK++V+E
Sbjct:    1 MALARLALRNLQQKLS---PSL------MGQ---SCERGLVGNRHNPMKLNRFMATSAGEQEDKMNTEVSVSEKKSPRQNFPRRRGRKSLWRNTDDHGYFTPTLNEFFPPTIGNTLIQATENMNRIFDNFNVNPFQLMGQVKEQDDCYKLRYEVPGLTKEDVKITVNDGILTIKGDHKAEEEKGSPEEDEYWSSKSYGYYNTSLSLPDDAKVEDIKAELKNGVLNLVIPRTEKPKKNVQE 228          
BLAST of CN188308 vs. ExPASy Swiss-Prot
Match: HS22C_SOYBN (Small heat shock protein, chloroplastic (Fragment) OS=Glycine max GN=HSP22 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.274e-17
Identity = 45/124 (36.29%), Postives = 76/124 (61.29%), Query Frame = 2
Query:  368 ALMQATENINRIFENLNFTPSQLMGR--------VKEQDDCYKLRYDVPGLGKDDVKITIHDGVLTIKGXXXXXXXXXXXXXXWSARSYGYYNTSLALPDDAKADEIKAELKNGVLNIVIPRTE 715
            ++ Q  + ++R+FE+    P + +G         +K+++   ++R+D+PGL K+DVK+++ D +L IKG              WS+R+Y  Y+T L LPD+ + D++KAELKNGVL I IP+T+
Sbjct:   48 SMRQILDTMDRVFEDTMTFPGRNIGGGEIRAPWDIKDEEHEIRMRFDMPGLAKEDVKVSVEDDMLVIKGGHKSEQEHGGDDS-WSSRTYSSYDTRLKLPDNCEKDKVKAELKNGVLYITIPKTK 170          
BLAST of CN188308 vs. ExPASy Swiss-Prot
Match: HS23M_ORYSJ (23.6 kDa heat shock protein, mitochondrial OS=Oryza sativa subsp. japonica GN=HSP23.6 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.878e-17
Identity = 52/143 (36.36%), Postives = 80/143 (55.94%), Query Frame = 2
Query:  335 LAEFFP----SGLGNALMQATENINRIFENLNFTPSQLMGRVKEQDDCYKLRYDVPGLGKDDVKITIHDGVLTIKG----XXXXXXXXXXXXXXWSARSYGYYNTSLALPDDAKADEIKAELKNGVLNIVIPRTEKPKQDVKE 739
            L +F P     G+G+AL Q  E + R           L G+V+E ++ Y+LR++VPGLGKDDV++ + DGVL I G                  W+A +   Y+  L LP+DA A+ I AE+++GVL++ +PR+ + K+ V E
Sbjct:   86 LRDFVPLRLVDGIGSALSQVAETLTR----------PLTGKVREDEERYRLRFEVPGLGKDDVRVYVDDGVLAIHGEKRDVVEEDRGRDGDGECWAAAT---YHAGLLLPEDAVAEGITAEVRDGVLHVTVPRSPERKRSVTE 215          
BLAST of CN188308 vs. ExPASy Swiss-Prot
Match: HS25P_ARATH (25.3 kDa heat shock protein, chloroplastic OS=Arabidopsis thaliana GN=HSP25.3 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.514e-16
Identity = 44/90 (48.89%), Postives = 58/90 (64.44%), Query Frame = 2
Query:  446 VKEQDDCYKLRYDVPGLGKDDVKITIHDGVLTIKGXXXXXXXXXXXXXXWSARSYGYYNTSLALPDDAKADEIKAELKNGVLNIVIPRTE 715
            +KE++   K+R+D+PGL K+DVKI++ D VL IKG              WS RS   Y T L LPD+ + D+IKAELKNGVL I IP+T+
Sbjct:  131 IKEEEHEIKMRFDMPGLSKEDVKISVEDNVLVIKGEQKKEDSDDS----WSGRSVSSYGTRLQLPDNCEKDKIKAELKNGVLFITIPKTK 216          
BLAST of CN188308 vs. ExPASy Swiss-Prot
Match: HS21C_PEA (Small heat shock protein, chloroplastic OS=Pisum sativum GN=HSP21 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 9.552e-16
Identity = 43/124 (34.68%), Postives = 74/124 (59.68%), Query Frame = 2
Query:  368 ALMQATENINRIFENLNFTPSQLMG--------RVKEQDDCYKLRYDVPGLGKDDVKITIHDGVLTIKGXXXXXXXXXXXXXXWSARSYGYYNTSLALPDDAKADEIKAELKNGVLNIVIPRTE 715
            ++ Q  + ++RIFE+    P + +G         +K+++   ++R+D+PG+ K+DVK+++ D VL IK               WS +SY  Y+T L LPD+ + +++KAELK+GVL I IP+T+
Sbjct:  101 SMRQMLDTMDRIFEDAITIPGRNIGGGEIRVPWEIKDEEHEIRMRFDMPGVSKEDVKVSVEDDVLVIKSDHREENGGEDC---WSRKSYSCYDTRLKLPDNCEKEKVKAELKDGVLYITIPKTK 221          
BLAST of CN188308 vs. ExPASy Swiss-Prot
Match: HS22C_PETHY (Small heat shock protein, chloroplastic OS=Petunia hybrida GN=HSP22 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.192e-15
Identity = 47/128 (36.72%), Postives = 76/128 (59.38%), Query Frame = 2
Query:  371 LMQATENINRIFEN-LNFTPSQLMGR--------VKEQDDCYKLRYDVPGLGKDDVKITIHDGVLTIKGXXXXXXXXXXXXXXWSARSYGYYNTSLALPDDAKADEIKAELKNGVLNIVIPRTEKPKQ 727
            + Q  + ++R+FE+ + F  S+  G         +K+ ++  K+R+D+PGL K++VK+++ D VL IKG              W  R+Y  Y+T L+LPD+   D++KAELKNGVL I IP+T+  K+
Sbjct:  110 MRQMMDTMDRLFEDTMTFPGSRNRGTGEIRAPWDIKDDENEIKMRFDMPGLSKEEVKVSVEDDVLVIKGEHKKEESGKDDS--WG-RNYSSYDTRLSLPDNVDKDKVKAELKNGVLLISIPKTKVEKK 234          
BLAST of CN188308 vs. ExPASy Swiss-Prot
Match: HS21C_SOLLC (Small heat shock protein, chloroplastic OS=Solanum lycopersicum GN=HSP21 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.941e-14
Identity = 47/145 (32.41%), Postives = 75/145 (51.72%), Query Frame = 2
Query:  323 DIPVLAEFFPSGLGNALMQATENINRIFENLNFTPSQLMGR----------VKEQDDCYKLRYDVPGLGKDDVKITIHDGVLTIKGXXXXXXXXXXXXXXWSARSYGYYNTSLALPDDAKADEIKAELKNGVLNIVIPRTEKPKQ 727
            D+       P      + Q  + ++R+FE+    P +              + + ++  K+R+D+PGL K+DVK+++ + +L IKG              W  R+Y  Y+T L+LPD+   D+IKAELKNGVL I IP+TE  K+
Sbjct:   86 DVSPFGVLDPMSPMRTMRQMIDTMDRLFEDTMTFPGRNRASGTGEIRTPWDIHDDENEIKMRFDMPGLSKEDVKVSVENDMLVIKGEHKKEEDGRDKHS-WG-RNYSSYDTRLSLPDNVVKDKIKAELKNGVLFISIPKTEVEKK 228          
BLAST of CN188308 vs. ExPASy Swiss-Prot
Match: HS26P_ORYSJ (26.7 kDa heat shock protein, chloroplastic OS=Oryza sativa subsp. japonica GN=HSP26.7 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.368e-12
Identity = 40/130 (30.77%), Postives = 67/130 (51.54%), Query Frame = 2
Query:  371 LMQATENINRIFENLNF----TPSQLMGR--------VKEQDDCYKLRYDVPGLGKDDVKITIHDGVLTIKGXXXXXXXXXXXXXX---WSARSYGYYNTSLALPDDAKADEIKAELKNGVLNIVIPRTE 715
            + Q  + ++RIF+++      TP + +          V E D   ++R+D+PGL +++VK+ + D  L I+G                 W  RS   Y+  LALPD+    +++AELKNGVL + +P+TE
Sbjct:  100 MRQMLDTMDRIFDDVALGFPATPRRSLATGEVRMPWDVMEDDKEVRMRFDMPGLSREEVKVMVEDDALVIRGEHKKEEGEGAEGSGDGWWKERSVSSYDMRLALPDECDKSKVRAELKNGVLLVTVPKTE 229          
BLAST of CN188308 vs. ExPASy Swiss-Prot
Match: HS23M_ARATH (23.6 kDa heat shock protein, mitochondrial OS=Arabidopsis thaliana GN=HSP23.6 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.424e-11
Identity = 45/142 (31.69%), Postives = 72/142 (50.70%), Query Frame = 2
Query:  344 FFPSGLGNALMQATENINRIFENLNFTPSQLMGR--------VKEQDDCYKLRYDVPGLGKDDVKITIHDGVLTIKGXXXXXXXXXXXXXXWSARSYGYYNTSLALPDDA-KADEIKAELKNGVLNIVIPR-TEKPKQDVKE 739
            F P     ++ Q    +++  EN   + ++ MG         +KE+DD   LR D+PGL ++DVK+ +    L I+G               + R    + + + LPD   K DEIKAE+KNGVL +VIP+  E+ + DV++
Sbjct:   69 FDPFSPTRSVSQVLNLMDQFMENPLLSATRGMGASGARRGWDIKEKDDALYLRIDMPGLSREDVKLALEQDTLVIRGEGKNEEDGGEEGESGNRR----FTSRIGLPDKIYKIDEIKAEMKNGVLKVVIPKMKEQERNDVRQ 206          
BLAST of CN188308 vs. ExPASy Swiss-Prot
Match: HSP11_CHERU (18.3 kDa class I heat shock protein OS=Chenopodium rubrum GN=HSP18 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.252e-11
Identity = 34/97 (35.05%), Postives = 53/97 (54.64%), Query Frame = 2
Query:  449 KEQDDCYKLRYDVPGLGKDDVKITIHDG-VLTIKGXXXXXXXXXXXXXXWSARSYGYYNTSLALPDDAKADEIKAELKNGVLNIVIPRTEKPKQDVK 736
            KE  + +  + D+PG+ K++VK+ + DG VL I G                 RS G +     LP++AK D++KA ++NGVL + +P+ E PK  VK
Sbjct:   60 KETPEAHVFKADLPGVKKEEVKVEVEDGNVLRISGQRAREKEEKNDTWHRVERSSGQFMRKFRLPENAKVDQVKAGMENGVLTVTVPKNEAPKPQVK 156          
The following BLAST results are available for this feature:
BLAST of CN188308 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
HS26M_ARATH1.903e-5652.9226.5 kDa heat shock protein, mitochondrial OS=Arab... [more]
HS22C_SOYBN2.274e-1736.29Small heat shock protein, chloroplastic (Fragment)... [more]
HS23M_ORYSJ3.878e-1736.3623.6 kDa heat shock protein, mitochondrial OS=Oryz... [more]
HS25P_ARATH2.514e-1648.8925.3 kDa heat shock protein, chloroplastic OS=Arab... [more]
HS21C_PEA9.552e-1634.68Small heat shock protein, chloroplastic OS=Pisum s... [more]
HS22C_PETHY6.192e-1536.72Small heat shock protein, chloroplastic OS=Petunia... [more]
HS21C_SOLLC8.941e-1432.41Small heat shock protein, chloroplastic OS=Solanum... [more]
HS26P_ORYSJ8.368e-1230.7726.7 kDa heat shock protein, chloroplastic OS=Oryz... [more]
HS23M_ARATH5.424e-1131.6923.6 kDa heat shock protein, mitochondrial OS=Arab... [more]
HSP11_CHERU9.252e-1135.0518.3 kDa class I heat shock protein OS=Chenopodium... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005N04_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005N04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188308 ID=CN188308; Name=CN188308; organism=Citrus sinensis; type=EST; length=741bp
AGTACAACCCAATTTCTCAAAAAACTCCCCTAGTTACCGAAAAAAAATGG
CTTTGGCTCGTTTGGCTTTGAGGAACGTGCAGCAAAGGGTGTCAACTTCT
TCCCCTTCTCTGGCAAATTTGCATAATAATCTTGGTGAGAGAAGTGCTAG
TACCATCGGTGGTGTACAAAGGCAAAAGTGGAGTAATGAGTTGTTGAAGA
GGTTCATGGCAACAGCTGCCAATGATGAGAAAAAACAAGACAGAGAAGTC
GCCGTGACTGAAAAAAGATCAAGGCTCTTTCCAAGGAGAAGAGGCAGGAG
GGGGAGTCTTTGGAGGAACAATGACATTCCCGTACTTGCTGAGTTCTTTC
CTTCAGGGCTTGGAAATGCACTCATGCAAGCAACCGAAAACATTAACAGG
ATATTCGAAAACTTGAACTTCACACCATCACAACTCATGGGGCGGGTGAA
AGAGCAAGACGACTGCTACAAGCTGCGGTATGACGTTCCGGGCCTAGGCA
AAGATGATGTGAAGATCACCATTCATGATGGGGTTCTGACAATAAAGGGT
GAGCACAAGGAAGAGGAAGAGGAAAGCTCTGACGACGAACACTGGTCAGC
AAGGAGCTATGGTTACTACAACACAAGCCTCGCGCTGCCTGATGATGCGA
AGGCTGACGAGATTAAGGCCGAGTTGAAAAACGGGGTTCTTAATATTGTA
ATTCCTAGGACCGAAAAGCCTAAGCAGGATGTGAAGGAAGT
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