CN188307

Overview
NameCN188307
Unique NameCN188307
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length851
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12765 contig Csv1_Contig12765:177..1027. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188307 vs. ExPASy Swiss-Prot
Match: HS26M_ARATH (26.5 kDa heat shock protein, mitochondrial OS=Arabidopsis thaliana GN=HSP26.5 PE=2 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 3.019e-51
Identity = 106/192 (55.21%), Postives = 133/192 (69.27%), Query Frame = -3
Query:  244 RFRATAAND-EKKQDREVAVTEKXXXXXXXXXXXXXXXXRNND------IPVLAEFFPSGLGNALMQATENINRIFENLNFTPSQLMGRVKEQDDCYKLRYDVPGLGKDDVKITIHDGVLTIKG--XXXXXXXXXXXXXHWSARSYGYYNTSLALPDDAKADEIKAELKNGVLNIVIPRTEKPKQDVKEVRI 792
            RF AT+A + E K + EV+V+EK                  N        P L EFFP  +GN L+QATEN+NRIF+N N  P QLMG+VKEQDDCYKLRY+VPGL K+DVKIT++DG+LTIKG               +WS++SYGYYNTSL+LPDDAK ++IKAELKNGVLN+VIPRTEKPK++V+E+ +
Sbjct:   40 RFMATSAGEQEDKMNTEVSVSEKKSPRQNFPRRRGRKSLWRNTDDHGYFTPTLNEFFPPTIGNTLIQATENMNRIFDNFNVNPFQLMGQVKEQDDCYKLRYEVPGLTKEDVKITVNDGILTIKGDHKAEEEKGSPEEDEYWSSKSYGYYNTSLSLPDDAKVEDIKAELKNGVLNLVIPRTEKPKKNVQEISV 231          
BLAST of CN188307 vs. ExPASy Swiss-Prot
Match: HS23M_ORYSJ (23.6 kDa heat shock protein, mitochondrial OS=Oryza sativa subsp. japonica GN=HSP23.6 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.400e-18
Identity = 53/146 (36.30%), Postives = 83/146 (56.85%), Query Frame = -3
Query:  244 LAEFFP----SGLGNALMQATENINRIFENLNFTPSQLMGRVKEQDDCYKLRYDVPGLGKDDVKITIHDGVLTIKG----XXXXXXXXXXXXXHWSARSYGYYNTSLALPDDAKADEIKAELKNGVLNIVIPRTEKPKQDVKEVRI 657
            L +F P     G+G+AL Q  E + R           L G+V+E ++ Y+LR++VPGLGKDDV++ + DGVL I G                  W+A +   Y+  L LP+DA A+ I AE+++GVL++ +PR+ + K+ V EV++
Sbjct:   86 LRDFVPLRLVDGIGSALSQVAETLTR----------PLTGKVREDEERYRLRFEVPGLGKDDVRVYVDDGVLAIHGEKRDVVEEDRGRDGDGECWAAAT---YHAGLLLPEDAVAEGITAEVRDGVLHVTVPRSPERKRSVTEVKV 218          
BLAST of CN188307 vs. ExPASy Swiss-Prot
Match: HS22C_SOYBN (Small heat shock protein, chloroplastic (Fragment) OS=Glycine max GN=HSP22 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.672e-17
Identity = 48/135 (35.56%), Postives = 83/135 (61.48%), Query Frame = -3
Query:  244 ALMQATENINRIFENLNFTPSQLMGR--------VKEQDDCYKLRYDVPGLGKDDVKITIHDGVLTIKGXXXXXXXXXXXXXHWSARSYGYYNTSLALPDDAKADEIKAELKNGVLNIVIPRTEKPKQDVKEVRI 624
            ++ Q  + ++R+FE+    P + +G         +K+++   ++R+D+PGL K+DVK+++ D +L IKG              WS+R+Y  Y+T L LPD+ + D++KAELKNGVL I IP+T K ++ V +V++
Sbjct:   48 SMRQILDTMDRVFEDTMTFPGRNIGGGEIRAPWDIKDEEHEIRMRFDMPGLAKEDVKVSVEDDMLVIKGGHKSEQEHGGDDS-WSSRTYSSYDTRLKLPDNCEKDKVKAELKNGVLYITIPKT-KVERKVIDVQV 180          
BLAST of CN188307 vs. ExPASy Swiss-Prot
Match: HS25P_ARATH (25.3 kDa heat shock protein, chloroplastic OS=Arabidopsis thaliana GN=HSP25.3 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.416e-16
Identity = 48/101 (47.52%), Postives = 65/101 (64.36%), Query Frame = -3
Query:  244 VKEQDDCYKLRYDVPGLGKDDVKITIHDGVLTIKGXXXXXXXXXXXXXHWSARSYGYYNTSLALPDDAKADEIKAELKNGVLNIVIPRTEKPKQDVKEVRI 546
            +KE++   K+R+D+PGL K+DVKI++ D VL IKG              WS RS   Y T L LPD+ + D+IKAELKNGVL I IP+T K ++ V +V+I
Sbjct:  131 IKEEEHEIKMRFDMPGLSKEDVKISVEDNVLVIKGEQKKEDSDDS----WSGRSVSSYGTRLQLPDNCEKDKIKAELKNGVLFITIPKT-KVERKVIDVQI 226          
BLAST of CN188307 vs. ExPASy Swiss-Prot
Match: HS21C_PEA (Small heat shock protein, chloroplastic OS=Pisum sativum GN=HSP21 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 7.025e-16
Identity = 47/135 (34.81%), Postives = 81/135 (60.00%), Query Frame = -3
Query:  244 ALMQATENINRIFENLNFTPSQLMG--------RVKEQDDCYKLRYDVPGLGKDDVKITIHDGVLTIKGXXXXXXXXXXXXXHWSARSYGYYNTSLALPDDAKADEIKAELKNGVLNIVIPRTEKPKQDVKEVRI 624
            ++ Q  + ++RIFE+    P + +G         +K+++   ++R+D+PG+ K+DVK+++ D VL IK               WS +SY  Y+T L LPD+ + +++KAELK+GVL I IP+T K ++ V +V+I
Sbjct:  101 SMRQMLDTMDRIFEDAITIPGRNIGGGEIRVPWEIKDEEHEIRMRFDMPGVSKEDVKVSVEDDVLVIKSDHREENGGEDC---WSRKSYSCYDTRLKLPDNCEKEKVKAELKDGVLYITIPKT-KIERTVIDVQI 231          
BLAST of CN188307 vs. ExPASy Swiss-Prot
Match: HS22C_PETHY (Small heat shock protein, chloroplastic OS=Petunia hybrida GN=HSP22 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.947e-15
Identity = 50/135 (37.04%), Postives = 80/135 (59.26%), Query Frame = -3
Query:  244 LMQATENINRIFEN-LNFTPSQLMGR--------VKEQDDCYKLRYDVPGLGKDDVKITIHDGVLTIKGXXXXXXXXXXXXXHWSARSYGYYNTSLALPDDAKADEIKAELKNGVLNIVIPRTEKPKQDVKEVRI 621
            + Q  + ++R+FE+ + F  S+  G         +K+ ++  K+R+D+PGL K++VK+++ D VL IKG              W  R+Y  Y+T L+LPD+   D++KAELKNGVL I IP+T K ++ V +V I
Sbjct:  110 MRQMMDTMDRLFEDTMTFPGSRNRGTGEIRAPWDIKDDENEIKMRFDMPGLSKEEVKVSVEDDVLVIKGEHKKEESGKDDS--WG-RNYSSYDTRLSLPDNVDKDKVKAELKNGVLLISIPKT-KVEKKVTDVEI 240          
BLAST of CN188307 vs. ExPASy Swiss-Prot
Match: HS21C_SOLLC (Small heat shock protein, chloroplastic OS=Solanum lycopersicum GN=HSP21 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.588e-14
Identity = 50/153 (32.68%), Postives = 81/153 (52.94%), Query Frame = -3
Query:  241 DIPVLAEFFPSGLGNALMQATENINRIFENLNFTPSQLMGR----------VKEQDDCYKLRYDVPGLGKDDVKITIHDGVLTIKGXXXXXXXXXXXXXHWSARSYGYYNTSLALPDDAKADEIKAELKNGVLNIVIPRTEKPKQDVKEVRIH 669
            D+       P      + Q  + ++R+FE+    P +              + + ++  K+R+D+PGL K+DVK+++ + +L IKG              W  R+Y  Y+T L+LPD+   D+IKAELKNGVL I IP+TE  K+ V +V+I+
Sbjct:   86 DVSPFGVLDPMSPMRTMRQMIDTMDRLFEDTMTFPGRNRASGTGEIRTPWDIHDDENEIKMRFDMPGLSKEDVKVSVENDMLVIKGEHKKEEDGRDKHS-WG-RNYSSYDTRLSLPDNVVKDKIKAELKNGVLFISIPKTEVEKK-VIDVQIN 235          
BLAST of CN188307 vs. ExPASy Swiss-Prot
Match: HS23M_ARATH (23.6 kDa heat shock protein, mitochondrial OS=Arabidopsis thaliana GN=HSP23.6 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 8.038e-12
Identity = 46/146 (31.51%), Postives = 75/146 (51.37%), Query Frame = -3
Query:  241 FFPSGLGNALMQATENINRIFENLNFTPSQLMGR--------VKEQDDCYKLRYDVPGLGKDDVKITIHDGVLTIKGXXXXXXXXXXXXXHWSARSYGYYNTSLALPDDA-KADEIKAELKNGVLNIVIPR-TEKPKQDVKEVRIH 648
            F P     ++ Q    +++  EN   + ++ MG         +KE+DD   LR D+PGL ++DVK+ +    L I+G               + R    + + + LPD   K DEIKAE+KNGVL +VIP+  E+ + DV+++ I+
Sbjct:   69 FDPFSPTRSVSQVLNLMDQFMENPLLSATRGMGASGARRGWDIKEKDDALYLRIDMPGLSREDVKLALEQDTLVIRGEGKNEEDGGEEGESGNRR----FTSRIGLPDKIYKIDEIKAEMKNGVLKVVIPKMKEQERNDVRQIEIN 210          
BLAST of CN188307 vs. ExPASy Swiss-Prot
Match: HS26P_ORYSJ (26.7 kDa heat shock protein, chloroplastic OS=Oryza sativa subsp. japonica GN=HSP26.7 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.050e-11
Identity = 40/130 (30.77%), Postives = 67/130 (51.54%), Query Frame = -3
Query:  277 LMQATENINRIFENLNF----TPSQLMGR--------VKEQDDCYKLRYDVPGLGKDDVKITIHDGVLTIKGXXXXXXXXXXXXXH---WSARSYGYYNTSLALPDDAKADEIKAELKNGVLNIVIPRTE 621
            + Q  + ++RIF+++      TP + +          V E D   ++R+D+PGL +++VK+ + D  L I+G                 W  RS   Y+  LALPD+    +++AELKNGVL + +P+TE
Sbjct:  100 MRQMLDTMDRIFDDVALGFPATPRRSLATGEVRMPWDVMEDDKEVRMRFDMPGLSREEVKVMVEDDALVIRGEHKKEEGEGAEGSGDGWWKERSVSSYDMRLALPDECDKSKVRAELKNGVLLVTVPKTE 229          
BLAST of CN188307 vs. ExPASy Swiss-Prot
Match: HS17A_ORYSJ (17.9 kDa class I heat shock protein OS=Oryza sativa subsp. japonica GN=HSP17.9A PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.371e-11
Identity = 38/101 (37.62%), Postives = 57/101 (56.44%), Query Frame = -3
Query:  244 KEQDDCYKLRYDVPGLGKDDVKITIHDG-VLTIKGXXXXXXXXXXXXXHWSARSYGYYNTSLALPDDAKADEIKAELKNGVLNIVIPRTEKPKQDVKEVRI 543
            KE  + +  + DVPGL K++VK+ + DG +L I G             H   RS G +     LPD+AK ++IKA ++NGVL + +P+ E  K DVK ++I
Sbjct:   59 KETPEAHVFKADVPGLKKEEVKVEVDDGNILQISGERNKEQEEKTDQWHRVERSSGKFLRRFRLPDNAKPEQIKASMENGVLTVTVPKEEAKKPDVKSIQI 159          
The following BLAST results are available for this feature:
BLAST of CN188307 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
HS26M_ARATH3.019e-5155.2126.5 kDa heat shock protein, mitochondrial OS=Arab... [more]
HS23M_ORYSJ4.400e-1836.3023.6 kDa heat shock protein, mitochondrial OS=Oryz... [more]
HS22C_SOYBN1.672e-1735.56Small heat shock protein, chloroplastic (Fragment)... [more]
HS25P_ARATH1.416e-1647.5225.3 kDa heat shock protein, chloroplastic OS=Arab... [more]
HS21C_PEA7.025e-1634.81Small heat shock protein, chloroplastic OS=Pisum s... [more]
HS22C_PETHY5.947e-1537.04Small heat shock protein, chloroplastic OS=Petunia... [more]
HS21C_SOLLC8.588e-1432.68Small heat shock protein, chloroplastic OS=Solanum... [more]
HS23M_ARATH8.038e-1231.5123.6 kDa heat shock protein, mitochondrial OS=Arab... [more]
HS26P_ORYSJ1.050e-1130.7726.7 kDa heat shock protein, chloroplastic OS=Oryz... [more]
HS17A_ORYSJ1.371e-1137.6217.9 kDa class I heat shock protein OS=Oryza sativ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005N04_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005N04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188307 ID=CN188307; Name=CN188307; organism=Citrus sinensis; type=EST; length=851bp
CCTTTTTTTCCTTAATTCATGGATTCTGAGTTTTTGATACAACTCCAACA
AATAAACATATTTATTACAAACTTGGAAACAAAGATGCTTCTGAAACTCA
GTAGGATCTTTCAGAAATTAAACACAAAGTTAATTATCTTTTAATCACAA
AGCAAAGTTACATAACTTATTTCCATTTCAAAACCAACCCAAAACCCTCC
ACAAAAACATCACAGACCATGCATAAACGCCACTTCACTAATGGATTCTC
ACTTCCTTCACATCCTGCTTAGGCTTTTCGGTCCTAGGAATTACAATATT
AAGAACCCCGTTTTTCAACTCGGCCTTAATCTCGTCAGCCTTCGCATCAT
CAGGCAGCGCGAGGCTTGTGTTGTAGTAACCATAGCTCCTTGCTGACCAG
TGTTCGTCGTCAGAGCTTTCCTCTTCCTCTTCCTTGTGCTCACCCTTTAT
TGTCAGAACCCCATCATGAATGGTGATCTTCACATCATCTTTGCCTAGGC
CCGGAACGTCATACCGCAGCTTGTAGCAGTCGTCTTGCTCTTTCACCCGC
CCCATGAGTTGTGATGGTGTGAAGTTCAAGTTTTCGAATATCCTGTTAAT
GTTTTCGGTTGCTTGCATGAGTGCATTTCCAAGCCCTGAAGGAAAGAACT
CAGCAAGTACGGGAATGTCATTGTTCCTCCAAAGACTCCCCCTCCTGCCT
CTTCTCCTTGGAAAGAGCCTTGATCTTTTTTCAGTCACGGCGACTTCTCT
GTCTTGTTTTTTCTCATCATTGGCAGCTGTTGCCCTGAACCTCTTTCAAC
ACTCATTACTCCACTTTTGCCTTTGTACACCACCGATGGTACTAGCACTT
C
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