CN188306

Overview
NameCN188306
Unique NameCN188306
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length282
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2579 contig Csv1_Contig2579:517..798. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188306 vs. ExPASy Swiss-Prot
Match: MT3_CARPA (Metallothionein-like protein type 3 OS=Carica papaya PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.114e-17
Identity = 37/57 (64.91%), Postives = 46/57 (80.70%), Query Frame = 2
Query:    5 CADRSQCVKKGSSYAADFVETDFSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTCG 175
            CAD++QCVKKGSSY AD +ET+ S ++  VVMD  AAE +G CKCGP+C+C NCTCG
Sbjct:   10 CADKTQCVKKGSSYTADIIETEKSIMT--VVMDAPAAENDGKCKCGPSCSCTNCTCG 64          
BLAST of CN188306 vs. ExPASy Swiss-Prot
Match: MT3_MUSAC (Metallothionein-like protein type 3 OS=Musa acuminata PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.468e-14
Identity = 33/58 (56.90%), Postives = 42/58 (72.41%), Query Frame = 2
Query:    5 CADRSQCVKKGSSYAADFVETDFSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTCGS 178
            C D+SQCVKKG+SY  D VET+ S+V  V+V   +AAE +G CKCG  CAC +C CG+
Sbjct:    9 CVDKSQCVKKGNSYGIDIVETEKSYVDEVIVA-AEAAEHDGKCKCGAACACTDCKCGN 65          
BLAST of CN188306 vs. ExPASy Swiss-Prot
Match: MT3_ACTDE (Metallothionein-like protein type 3 OS=Actinidia deliciosa GN=pKIWI503 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.563e-13
Identity = 36/56 (64.29%), Postives = 41/56 (73.21%), Query Frame = 2
Query:    5 CADRSQCVKKGSSYAADFVETDFSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTC 172
            CAD SQCVKKG+S   D VETD S++  VV M V AAE+ G CKCG +C CVNCTC
Sbjct:   10 CADSSQCVKKGNSI--DIVETDKSYIEDVV-MGVPAAESGGKCKCGTSCPCVNCTC 62          
BLAST of CN188306 vs. ExPASy Swiss-Prot
Match: MT3_MALDO (Metallothionein-like protein type 3 OS=Malus domestica GN=MT2 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.768e-12
Identity = 33/57 (57.89%), Postives = 40/57 (70.18%), Query Frame = 2
Query:    5 CADRSQCVKKGSSYAADFVETDFSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTCG 175
            CAD +QCVKKG+SY    VET+   + TV V D  AAE +G CKCG  C+CV+CTCG
Sbjct:   10 CADSTQCVKKGNSYDLVIVETENRSMDTVFV-DAPAAEHDGKCKCGTGCSCVSCTCG 65          
BLAST of CN188306 vs. ExPASy Swiss-Prot
Match: MT3_PRUAV (Metallothionein-like protein 1 OS=Prunus avium GN=MT1 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.016e-12
Identity = 32/56 (57.14%), Postives = 39/56 (69.64%), Query Frame = 2
Query:    5 CADRSQCVKKGSSYAADFVETDFSFVSTVVVMDVQAAEAEGNCKCGPTCACVNCTC 172
            C+D SQC KKG S+    VET+   + TV+ MD  AAE  GNCKCGP+CACV+C C
Sbjct:   10 CSDSSQCTKKGYSFDLVIVETENRSMDTVI-MDAPAAENGGNCKCGPSCACVDCKC 64          
The following BLAST results are available for this feature:
BLAST of CN188306 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
MT3_CARPA3.114e-1764.91Metallothionein-like protein type 3 OS=Carica papa... [more]
MT3_MUSAC2.468e-1456.90Metallothionein-like protein type 3 OS=Musa acumin... [more]
MT3_ACTDE3.563e-1364.29Metallothionein-like protein type 3 OS=Actinidia d... [more]
MT3_MALDO1.768e-1257.89Metallothionein-like protein type 3 OS=Malus domes... [more]
MT3_PRUAV3.016e-1257.14Metallothionein-like protein 1 OS=Prunus avium GN=... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0005N03_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005N03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188306 ID=CN188306; Name=CN188306; organism=Citrus sinensis; type=EST; length=282bp
ATTCTGCGCTGACAGGAGCCAGTGTGTGAAGAAGGGAAGCAGCTATGCTG
CTGACTTCGTCGAGACTGACTTTAGCTTTGTCAGCACCGTTGTTGTCATG
GACGTTCAGGCTGCTGAGGCTGAAGGTAACTGCAAGTGCGGCCCCACCTG
CGCTTGTGTGAACTGCACTTGTGGTAGTCACTAATAAGCAAACACATGCA
GCAAAAAATAAGAAGCTGCAAGTGTGCCTAAATATTGTGGGGGTTAAGAA
TAATGTAAGGGTGATTAAAAAAAAAAAAAAAA
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