CN188283

Overview
NameCN188283
Unique NameCN188283
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length628
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188283 vs. ExPASy Swiss-Prot
Match: GOT1B_MOUSE (Vesicle transport protein GOT1B OS=Mus musculus GN=Golt1b PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 4.902e-17
Identity = 40/88 (45.45%), Postives = 57/88 (64.77%), Query Frame = 1
Query:  361 DKGLLAMGNILFIAGVSLTIGLKSTMQFFMKRQNNKGTISXXXXXXXXXXXWPILGMILETYGFIVLFSGFWPTLSVFLQRIPILGWL 624
            DK LLA+GN+LF+AG++  IGL+ T +FF +R   K T             WP++GMI E YGF +LF GF+P +  F++R+P+LG L
Sbjct:   31 DKALLAIGNVLFVAGLAFVIGLERTFRFFFQRHKVKATGFFLGGVFVVLIGWPLIGMIFEIYGFFLLFRGFFPVVVGFIRRVPVLGSL 118          
BLAST of CN188283 vs. ExPASy Swiss-Prot
Match: GOT1B_HUMAN (Vesicle transport protein GOT1B OS=Homo sapiens GN=GOLT1B PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 8.362e-17
Identity = 39/88 (44.32%), Postives = 57/88 (64.77%), Query Frame = 1
Query:  361 DKGLLAMGNILFIAGVSLTIGLKSTMQFFMKRQNNKGTISXXXXXXXXXXXWPILGMILETYGFIVLFSGFWPTLSVFLQRIPILGWL 624
            DK LLA+GN+LF+AG++  IGL+ T +FF ++   K T             WP++GMI E YGF +LF GF+P +  F++R+P+LG L
Sbjct:   31 DKALLAIGNVLFVAGLAFVIGLERTFRFFFQKHKMKATGFFLGGVFVVLIGWPLIGMIFEIYGFFLLFRGFFPVVVGFIRRVPVLGSL 118          
BLAST of CN188283 vs. ExPASy Swiss-Prot
Match: GOT1B_BOVIN (Vesicle transport protein GOT1B OS=Bos taurus GN=GOLT1B PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 8.362e-17
Identity = 39/88 (44.32%), Postives = 57/88 (64.77%), Query Frame = 1
Query:  361 DKGLLAMGNILFIAGVSLTIGLKSTMQFFMKRQNNKGTISXXXXXXXXXXXWPILGMILETYGFIVLFSGFWPTLSVFLQRIPILGWL 624
            DK LLA+GN+LF+AG++  IGL+ T +FF ++   K T             WP++GMI E YGF +LF GF+P +  F++R+P+LG L
Sbjct:   31 DKALLAIGNVLFVAGLAFVIGLERTFRFFFQKHKMKATGFFLGGVFVVLIGWPLIGMIFEIYGFFLLFRGFFPVVVGFIRRVPVLGSL 118          
BLAST of CN188283 vs. ExPASy Swiss-Prot
Match: GOT1A_HUMAN (Vesicle transport protein GOT1A OS=Homo sapiens GN=GOLT1A PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.060e-15
Identity = 45/92 (48.91%), Postives = 52/92 (56.52%), Query Frame = 1
Query:  361 DKGLLAMGNILFIAGVSLTIGLKSTMQFFMKRQNNKGTISXXXXXXXXXXXWPILGMILETYGFIVLFSGFWPTLSVFLQ---RIPILGWLF 627
            D  LLA GN+LF+ G+SL IGL+ T  FF +R   KGT             WP+LGM LETYGF  LF GF+P    FL     IP LG LF
Sbjct:   31 DSVLLAFGNLLFLTGLSLIIGLRKTFWFFFQRHKLKGTSFLLGGVVIVLLRWPLLGMFLETYGFFSLFKGFFPVAFGFLGNVCNIPFLGALF 122          
BLAST of CN188283 vs. ExPASy Swiss-Prot
Match: GOT1A_MOUSE (Vesicle transport protein GOT1A OS=Mus musculus GN=Golt1a PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.513e-15
Identity = 44/92 (47.83%), Postives = 53/92 (57.61%), Query Frame = 1
Query:  361 DKGLLAMGNILFIAGVSLTIGLKSTMQFFMKRQNNKGTISXXXXXXXXXXXWPILGMILETYGFIVLFSGFWPTLSVFLQ---RIPILGWLF 627
            D  LLA GN+LF+ G+SL IGL+ T  FF +R   KGT             WP+LGM+LE YGFI LF GF+P +  FL     IP L  LF
Sbjct:   31 DSVLLAFGNLLFLTGLSLIIGLRRTFAFFFQRHKLKGTSFFLGGVAIVLLRWPLLGMLLEAYGFISLFKGFFPVVFGFLGSAFNIPFLSTLF 122          
BLAST of CN188283 vs. ExPASy Swiss-Prot
Match: GOT1A_BOVIN (Vesicle transport protein GOT1A OS=Bos taurus GN=GOLT1A PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 7.826e-15
Identity = 44/92 (47.83%), Postives = 51/92 (55.43%), Query Frame = 1
Query:  361 DKGLLAMGNILFIAGVSLTIGLKSTMQFFMKRQNNKGTISXXXXXXXXXXXWPILGMILETYGFIVLFSGFWPTLSVFL---QRIPILGWLF 627
            D  LLA GN+LF+ G+SL IGL+ T  FF +R   KGT             WP+LGM LETYGF  LF GF+P    FL     IP L  LF
Sbjct:   31 DSVLLAFGNLLFLTGLSLIIGLRRTFSFFFQRHKFKGTSFFLGGVVIVLLRWPLLGMCLETYGFFSLFRGFFPVAFGFLGSASNIPFLSALF 122          
BLAST of CN188283 vs. ExPASy Swiss-Prot
Match: GOT1_CAEEL (Probable Golgi transport protein 1 OS=Caenorhabditis elegans GN=F41C3.4 PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 3.635e-12
Identity = 39/115 (33.91%), Postives = 59/115 (51.30%), Query Frame = 1
Query:  265 MVSFEMNDRKKXXXXXXXXXXXXXXXXXXXXXDKGLLAMGNILFIAGVSLTIGLKSTMQFFMKRQNNKGTISXXXXXXXXXXXWPILGMILETYGFIVLFSGFWPTLSVFLQRIP 609
            M++FE++  K+                     D  LLA+GN+LFI G++  IG++ T+ FF + +  KG+I            +P+ GMI E +GFIVLF GF P +   L+ IP
Sbjct:    1 MMNFEVSTTKQIGVGLTTFGFFFIFLGVLMFLDSALLAIGNLLFIVGITFIIGVQRTLVFFFEFRKLKGSILFFGGILVVLFGYPLFGMIAECWGFIVLFGGFLPGIVNLLRSIP 115          
BLAST of CN188283 vs. ExPASy Swiss-Prot
Match: GOT1_DICDI (Protein transport protein got1 homolog OS=Dictyostelium discoideum GN=golt1 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 5.250e-11
Identity = 31/87 (35.63%), Postives = 54/87 (62.07%), Query Frame = 1
Query:  361 DKGLLAMGNILFIAGVSLTIGLKSTMQFFMKRQNNKGTI-SXXXXXXXXXXXWPILGMILETYGFIVLFSGFWPTLSVFLQRIPILG 618
            D+ LLA+GN+L ++G+ L +GL+ T +FF +++  KGTI             W  +GM++E +GF+ LF   +P +   L+++PI+G
Sbjct:   29 DRNLLALGNLLLVSGIVLILGLQKTTKFFAQKKKIKGTILFFFGIVVLLVTRWTFVGMVIEIFGFVNLFGDAFPIVISILRKLPIIG 115          
The following BLAST results are available for this feature:
BLAST of CN188283 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
GOT1B_MOUSE4.902e-1745.45Vesicle transport protein GOT1B OS=Mus musculus GN... [more]
GOT1B_HUMAN8.362e-1744.32Vesicle transport protein GOT1B OS=Homo sapiens GN... [more]
GOT1B_BOVIN8.362e-1744.32Vesicle transport protein GOT1B OS=Bos taurus GN=G... [more]
GOT1A_HUMAN2.060e-1548.91Vesicle transport protein GOT1A OS=Homo sapiens GN... [more]
GOT1A_MOUSE3.513e-1547.83Vesicle transport protein GOT1A OS=Mus musculus GN... [more]
GOT1A_BOVIN7.826e-1547.83Vesicle transport protein GOT1A OS=Bos taurus GN=G... [more]
GOT1_CAEEL3.635e-1233.91Probable Golgi transport protein 1 OS=Caenorhabdit... [more]
GOT1_DICDI5.250e-1135.63Protein transport protein got1 homolog OS=Dictyost... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0005M13_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005M13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188283 ID=CN188283; Name=CN188283; organism=Citrus sinensis; type=EST; length=628bp
GAGGATACCAAATTCAAATTGGTCATTTAAATAAATTGCTCGACTTTAAC
CGTCAACTCCTACTTCGCACGCACAATGACGTTCTTGTCCACGCCCGCCA
CCGCTCTCTAACTCTCCAGTCTCCATCTCACAAAACGCGTCGTTTTGATT
CCGAGAACAAATCTAACTCGCTAAGGCGCGCAATAGATCAATCGAGCTCG
TTTTTTTTTTCTTTTTCACAGATTTAGCAAAGCGAAGGTGACGAGTTCTT
GAATCGGCGACACAATGGTTTCGTTTGAAATGAATGATCGTAAAAAGATT
GGGCTGGGGTTGACAGGATTTGGCATTTTTTTCACATTCTTGGGAATCAT
CTTTTTCTTTGACAAGGGACTACTTGCCATGGGAAATATTCTCTTCATTG
CAGGGGTGTCTCTTACTATTGGTTTGAAGTCGACCATGCAATTCTTTATG
AAACGTCAGAATAATAAGGGAACTATCTCTTTTGGTGTTGGCTTCTTCTT
TGTTGTTATCGGATGGCCAATTTTGGGAATGATTCTTGAGACATATGGCT
TCATTGTACTCTTCAGTGGCTTCTGGCCTACACTCTCAGTTTTCTTGCAG
AGGATACCCATTCTTGGTTGGTTGTTCC
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