CN188281

Overview
NameCN188281
Unique NameCN188281
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length766
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN188281_ssr331 microsatellite CN188281_ssr331:331..340. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of CN188281 vs. ExPASy Swiss-Prot
Match: GH33_ARATH (Indole-3-acetic acid-amido synthetase GH3.3 OS=Arabidopsis thaliana GN=GH3.3 PE=1 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 4.825e-42
Identity = 82/97 (84.54%), Postives = 88/97 (90.72%), Query Frame = -3
Query:  474 SDEVLNQCCLVVEESLNSVYRQGRVADNSIGPLEIRVVKNGTFEELMDYAISRGASINQYKAPRCVSFTPILELLNGRVVSKHFSPAAPHWVPERRR 764
            +DEV+ +CCL +EESLNSVYRQ RVAD SIGPLEIRVVKNGTFEELMDYAISRGASINQYK PRCVSFTPI+ELL+ RVVS HFSPA PHW PERRR
Sbjct:  499 NDEVMARCCLEMEESLNSVYRQSRVADKSIGPLEIRVVKNGTFEELMDYAISRGASINQYKVPRCVSFTPIMELLDSRVVSTHFSPALPHWSPERRR 595          
BLAST of CN188281 vs. ExPASy Swiss-Prot
Match: GH31_ARATH (Probable indole-3-acetic acid-amido synthetase GH3.1 OS=Arabidopsis thaliana GN=GH3.1 PE=2 SV=1)

HSP 1 Score: 168.318 bits (425), Expect = 4.085e-41
Identity = 79/97 (81.44%), Postives = 87/97 (89.69%), Query Frame = -3
Query:  474 SDEVLNQCCLVVEESLNSVYRQGRVADNSIGPLEIRVVKNGTFEELMDYAISRGASINQYKAPRCVSFTPILELLNGRVVSKHFSPAAPHWVPERRR 764
            S E L +CCL +EESLNSVYRQ RVADNS+GPLEIRVV+NGTFEELMDYAISRGASINQYK PRCV+FTPI+ELL+ RVVS HFSP+ PHW PERRR
Sbjct:  493 SHETLTRCCLGMEESLNSVYRQSRVADNSVGPLEIRVVRNGTFEELMDYAISRGASINQYKVPRCVNFTPIVELLDSRVVSAHFSPSLPHWTPERRR 589          
BLAST of CN188281 vs. ExPASy Swiss-Prot
Match: GH34_ARATH (Indole-3-acetic acid-amido synthetase GH3.4 OS=Arabidopsis thaliana GN=GH3.4 PE=1 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 5.521e-38
Identity = 73/96 (76.04%), Postives = 86/96 (89.58%), Query Frame = -3
Query:  477 SDEVLNQCCLVVEESLNSVYRQGRVADNSIGPLEIRVVKNGTFEELMDYAISRGASINQYKAPRCVSFTPILELLNGRVVSKHFSPAAPHWVPERR 764
            SDEV+ +CCL +EESLN+VYRQ RV+D SIGPLEIRVV+NGTFEELMD++ISRG+SINQYK PRCVS TPI++LL+ RVVS HFSP+ PHW PERR
Sbjct:  501 SDEVMAKCCLEMEESLNAVYRQSRVSDKSIGPLEIRVVQNGTFEELMDFSISRGSSINQYKVPRCVSLTPIMKLLDSRVVSAHFSPSLPHWSPERR 596          
BLAST of CN188281 vs. ExPASy Swiss-Prot
Match: GH38_ORYSJ (Probable indole-3-acetic acid-amido synthetase GH3.8 OS=Oryza sativa subsp. japonica GN=GH3.8 PE=2 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 7.972e-37
Identity = 72/94 (76.60%), Postives = 81/94 (86.17%), Query Frame = -3
Query:  477 EVLNQCCLVVEESLNSVYRQGRVADNSIGPLEIRVVKNGTFEELMDYAISRGASINQYKAPRCVSFTPILELLNGRVVSKHFSPAAPHWVPERR 758
            + L +CCL +EE+LN+VYRQ RVAD SIGPLEIRVV+ GTFEELMDYAISRGASINQYK PRCV+F PI+ELL+ RVVS HFSPA PHW P RR
Sbjct:  510 DTLGRCCLEMEEALNTVYRQSRVADGSIGPLEIRVVRPGTFEELMDYAISRGASINQYKVPRCVTFPPIVELLDSRVVSSHFSPALPHWTPARR 603          
BLAST of CN188281 vs. ExPASy Swiss-Prot
Match: GH38_ORYSI (Probable indole-3-acetic acid-amido synthetase GH3.8 OS=Oryza sativa subsp. indica GN=GH3.8 PE=2 SV=2)

HSP 1 Score: 154.066 bits (388), Expect = 7.972e-37
Identity = 72/94 (76.60%), Postives = 81/94 (86.17%), Query Frame = -3
Query:  477 EVLNQCCLVVEESLNSVYRQGRVADNSIGPLEIRVVKNGTFEELMDYAISRGASINQYKAPRCVSFTPILELLNGRVVSKHFSPAAPHWVPERR 758
            + L +CCL +EE+LN+VYRQ RVAD SIGPLEIRVV+ GTFEELMDYAISRGASINQYK PRCV+F PI+ELL+ RVVS HFSPA PHW P RR
Sbjct:  510 DTLGRCCLEMEEALNTVYRQSRVADGSIGPLEIRVVRPGTFEELMDYAISRGASINQYKVPRCVTFPPIVELLDSRVVSSHFSPALPHWTPARR 603          
BLAST of CN188281 vs. ExPASy Swiss-Prot
Match: GH36_ARATH (Indole-3-acetic acid-amido synthetase GH3.6 OS=Arabidopsis thaliana GN=GH3.6 PE=1 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 5.347e-33
Identity = 65/96 (67.71%), Postives = 77/96 (80.21%), Query Frame = -3
Query:  468 VLNQCCLVVEESLNSVYRQGRVADNSIGPLEIRVVKNGTFEELMDYAISRGASINQYKAPRCVSFTPILELLNGRVVSKHFSPAAPHWVPERRR*G 755
            V   CCL +EESLNSVYRQGRV+D SIGPLEI++V++GTF++LMDYAIS GASINQYK PRCV F PI+ELLN RVV  +FSP  P W P  ++ G
Sbjct:  515 VFEDCCLTIEESLNSVYRQGRVSDKSIGPLEIKMVESGTFDKLMDYAISLGASINQYKTPRCVKFAPIIELLNSRVVDSYFSPKCPKWSPGHKQWG 610          
BLAST of CN188281 vs. ExPASy Swiss-Prot
Match: GH35_ARATH (Indole-3-acetic acid-amido synthetase GH3.5 OS=Arabidopsis thaliana GN=GH3.5 PE=1 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 6.984e-33
Identity = 65/96 (67.71%), Postives = 76/96 (79.17%), Query Frame = -3
Query:  468 VLNQCCLVVEESLNSVYRQGRVADNSIGPLEIRVVKNGTFEELMDYAISRGASINQYKAPRCVSFTPILELLNGRVVSKHFSPAAPHWVPERRR*G 755
            V   CCL VEES N+VYRQGRV+D SIGPLEI++V+ GTF++LMDYAIS GASINQYK PRCV F PI+ELLN RVV  +FSP  P WVP  ++ G
Sbjct:  515 VFEDCCLAVEESFNTVYRQGRVSDKSIGPLEIKIVEPGTFDKLMDYAISLGASINQYKTPRCVKFAPIIELLNSRVVDSYFSPKCPKWVPGHKQWG 610          
BLAST of CN188281 vs. ExPASy Swiss-Prot
Match: GH32_ORYSJ (Probable indole-3-acetic acid-amido synthetase GH3.2 OS=Oryza sativa subsp. japonica GN=GH3.2 PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.556e-32
Identity = 67/93 (72.04%), Postives = 80/93 (86.02%), Query Frame = -3
Query:  477 VLNQCCLVVEESLNSVYRQGRVADNSIGPLEIRVVKNGTFEELMDYAISRGASINQYKAPRCVSFTPILELLNGRVVSKHFSPAAPHWVPERR 755
            V  +CCL +EE+LN+VYRQGR  + +IGPLEIRVV+ GTFEE+MDYAISRGASINQYKAPRCVSF PI+ELLN RV+SKHFSPA P + P ++
Sbjct:  523 VFERCCLEMEEALNAVYRQGRNGE-AIGPLEIRVVRAGTFEEVMDYAISRGASINQYKAPRCVSFGPIIELLNSRVISKHFSPACPKYSPHKK 614          
BLAST of CN188281 vs. ExPASy Swiss-Prot
Match: GH31_ORYSJ (Probable indole-3-acetic acid-amido synthetase GH3.1 OS=Oryza sativa subsp. japonica GN=GH3.1 PE=2 SV=1)

HSP 1 Score: 135.191 bits (339), Expect = 3.832e-31
Identity = 64/94 (68.09%), Postives = 74/94 (78.72%), Query Frame = -3
Query:  474 VLNQCCLVVEESLNSVYRQGRVADNSIGPLEIRVVKNGTFEELMDYAISRGASINQYKAPRCVSFTPILELLNGRVVSKHFSPAAPHWVPERRR 755
            V  +CCL VEE+LNSVYRQGR  D SIGPLEIRVV  GTF++LMDYAISRGASINQYKAPRCV   P++ELL+ RV  K+FSP  P W P  ++
Sbjct:  504 VFEECCLSVEEALNSVYRQGRACDRSIGPLEIRVVAEGTFDKLMDYAISRGASINQYKAPRCVRPGPVVELLDARVQGKYFSPKCPKWSPGNKQ 597          
BLAST of CN188281 vs. ExPASy Swiss-Prot
Match: GH39_ORYSJ (Probable indole-3-acetic acid-amido synthetase GH3.9 OS=Oryza sativa subsp. japonica GN=GH3.9 PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 6.536e-31
Identity = 61/94 (64.89%), Postives = 76/94 (80.85%), Query Frame = -3
Query:  477 EVLNQCCLVVEESLNSVYRQGRVADNSIGPLEIRVVKNGTFEELMDYAISRGASINQYKAPRCVSFTPILELLNGRVVSKHFSPAAPHWVPERR 758
            E L +CCL +EE+L++VYRQGRVAD SIGPLEIR+V+ GTFEE+MD A+SRG SI QYK P+CV+   ++ELL+ RVVS  FSPA PHW+P  R
Sbjct:  346 ETLGRCCLEMEEALSAVYRQGRVADGSIGPLEIRIVRPGTFEEVMDLAVSRGTSIGQYKVPQCVTVPSVVELLDSRVVSSQFSPALPHWIPTPR 439          
The following BLAST results are available for this feature:
BLAST of CN188281 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
GH33_ARATH4.825e-4284.54Indole-3-acetic acid-amido synthetase GH3.3 OS=Ara... [more]
GH31_ARATH4.085e-4181.44Probable indole-3-acetic acid-amido synthetase GH3... [more]
GH34_ARATH5.521e-3876.04Indole-3-acetic acid-amido synthetase GH3.4 OS=Ara... [more]
GH38_ORYSJ7.972e-3776.60Probable indole-3-acetic acid-amido synthetase GH3... [more]
GH38_ORYSI7.972e-3776.60Probable indole-3-acetic acid-amido synthetase GH3... [more]
GH36_ARATH5.347e-3367.71Indole-3-acetic acid-amido synthetase GH3.6 OS=Ara... [more]
GH35_ARATH6.984e-3367.71Indole-3-acetic acid-amido synthetase GH3.5 OS=Ara... [more]
GH32_ORYSJ1.556e-3272.04Probable indole-3-acetic acid-amido synthetase GH3... [more]
GH31_ORYSJ3.832e-3168.09Probable indole-3-acetic acid-amido synthetase GH3... [more]
GH39_ORYSJ6.536e-3164.89Probable indole-3-acetic acid-amido synthetase GH3... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0005M12_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005M12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188281 ID=CN188281; Name=CN188281; organism=Citrus sinensis; type=EST; length=766bp
CCTTTTTAGACAAAGAAAATATACATTAATTAATAATTTAAAGCATCACC
CGATCTAATTACAAATTTGCCAGAATTAAATACAGGACATGGAACTAAAG
CTGTTCATGGCAAGCACTTCCAACGCCTTTTCCTCAACTTTCAGAAAGCT
GAAAGAAAATTAAAAGAGACACGACGACGACAACGACATGCCATCGACAT
TCCATAGACACTTACATCACGCGCACAGGGAGATTATGTGAACTTATTGC
ACAAACACACACTACCATCAAATTTCAAAAGAAGCTAAAAGACGCTTTTA
AAAGTTCAATTAACAACAAAGAGATGACATAGAGAGAGAGGCTGCTCTGA
ATCTGATCTCGGTCTCCTCAAGCTACTAGCTGGACCTTTTTGGTTGGAAC
CCCTGGAAAATTTCTCTAGAAATTTCTTTATTCTATAGTGCCATACATGA
CGCTCGTCATGGTGCAGTCCTCAACGTCGTCGTTCTGGGACCCAGTGAGG
AGCAGCTGGGCTAAAATGCTTTGAGACCACCCTACCATTAAGCAGTTCCA
GAATGGGAGTGAAACTAACACACCTTGGCGCTTTGTACTGATTAATTGAC
GCGCCCCTTGAAATGGCATAGTCCATTAGCTCCTCAAATGTCCCATTTTT
CACCACCCTTATCTCTAGTGGTCCAATTGAATTATCAGCAACTCGGCCTT
GTCGATACACCGAGTTCAGCGACTCTTCCACTACCAGGCAACATTGATTC
AGCACCTCATCACTTG
back to top