CN188273

Overview
NameCN188273
Unique NameCN188273
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length339
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6429 contig Csv1_Contig6429:531..869. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CN188273 vs. ExPASy Swiss-Prot
Match: TCPD_DICDI (T-complex protein 1 subunit delta OS=Dictyostelium discoideum GN=cct4 PE=3 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.373e-11
Identity = 34/43 (79.07%), Postives = 37/43 (86.05%), Query Frame = -3 
Query:  209 KGQITNILEENVVQPLLVSTSAITLAAECVRMILKIDDIVTVR 337
            KG ITNIL+ENVVQPLLVSTSA+TLA E V M+LKIDDI T R
Sbjct:  491 KGAITNILQENVVQPLLVSTSALTLATETVVMLLKIDDIATAR 533
The following BLAST results are available for this feature:
BLAST of CN188273 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TCPD_DICDI4.373e-1179.07T-complex protein 1 subunit delta OS=Dictyostelium... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0005M08_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005M08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188273 ID=CN188273; Name=CN188273; organism=Citrus sinensis; type=EST; length=339bp
TTTTTTTTTTTTTTTTTAATAGTTAATCAGTCATTCGACTGCTAATTAAC
CATAAAACAGCAAATTCAAACCAAATATTTGGCAACAAAAATAACAAAGT
CAAAACTCTTAACAGCAATCAATCCTAAAACAGAGCTTACTAATTCAGAT
AATACAAGGACGCAAAACATAAGTAGGGAACACACTTTCATCTTTGGATG
GAAAACTACCTCACAGTAACGATGTCATCAATCTTCAAAATCATCCTTAC
ACACTCTGCAGCCAGTGTTATTGCACTTGTGCTCACAAGCAGTGGCTGCA
CCACATTCTCCTCCAAAATATTGGTAATCTGCCCCTTCC
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