CN188271

Overview
NameCN188271
Unique NameCN188271
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length805
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN188271_ssr775 microsatellite CN188271_ssr775:775..786. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5924 contig Csv1_Contig5924:27..831. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188271 vs. ExPASy Swiss-Prot
Match: UBC13_ARATH (Ubiquitin-conjugating enzyme E2 13 OS=Arabidopsis thaliana GN=UBC13 PE=2 SV=1)

HSP 1 Score: 271.166 bits (692), Expect = 4.869e-72
Identity = 124/151 (82.12%), Postives = 133/151 (88.08%), Query Frame = -2
Query:  268 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFKKKVGRCVRRSQEM 720
            DLCK+PV GFSAGLVDE NIFEWSVTIIGPPDTLYEGGFF AIMSFP NYPNSPPTV+FT++IWHPNVYPDGRVCISILHPPGDDP+GYELASERW PVHTVE            PNDESPANVEAAKEWR++RD+FKKKV RCVR+SQEM
Sbjct:   15 DLCKHPVDGFSAGLVDEKNIFEWSVTIIGPPDTLYEGGFFYAIMSFPQNYPNSPPTVRFTSDIWHPNVYPDGRVCISILHPPGDDPSGYELASERWTPVHTVESIMLSIISMLSGPNDESPANVEAAKEWREKRDEFKKKVSRCVRKSQEM 165          
BLAST of CN188271 vs. ExPASy Swiss-Prot
Match: UBC7_ARATH (Ubiquitin-conjugating enzyme E2 7 OS=Arabidopsis thaliana GN=UBC7 PE=2 SV=1)

HSP 1 Score: 270.396 bits (690), Expect = 8.306e-72
Identity = 123/151 (81.46%), Postives = 133/151 (88.08%), Query Frame = -2
Query:  268 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFKKKVGRCVRRSQEM 720
            DLCK+PV GFSAGLVDE NIFEWSVTIIGPPDTLYEGGFFNAIM+FP NYPNSPPTV+FT+++WHPNVY DGRVCISILHPPGDDP+GYELASERW PVHTVE            PNDESPANVEAAKEWRD+RD+FKKKV RCVR+SQEM
Sbjct:   15 DLCKHPVDGFSAGLVDEKNIFEWSVTIIGPPDTLYEGGFFNAIMTFPQNYPNSPPTVRFTSDMWHPNVYSDGRVCISILHPPGDDPSGYELASERWTPVHTVESIMLSIISMLSGPNDESPANVEAAKEWRDKRDEFKKKVSRCVRKSQEM 165          
BLAST of CN188271 vs. ExPASy Swiss-Prot
Match: UBC14_ARATH (Ubiquitin-conjugating enzyme E2 14 OS=Arabidopsis thaliana GN=UBC14 PE=2 SV=1)

HSP 1 Score: 259.996 bits (663), Expect = 1.123e-68
Identity = 119/152 (78.29%), Postives = 129/152 (84.87%), Query Frame = -2
Query:  265 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFKKKVGRCVRRSQEML 720
            DLCK PV GFSAGLVDE N+F+WSV+I+GPPDTLYEGGFFNAIMSFP NYP SPPTV FT+E+WHPNVY DG+VCISILHPPGDDP+GYELASERW PVHTVE            PNDESPANVEAAKEWRD R +F+KKV RCVRRSQEML
Sbjct:   16 DLCKKPVDGFSAGLVDEKNVFQWSVSIMGPPDTLYEGGFFNAIMSFPENYPVSPPTVTFTSEMWHPNVYSDGKVCISILHPPGDDPHGYELASERWTPVHTVESIVLSIISMLSGPNDESPANVEAAKEWRDNRAEFRKKVSRCVRRSQEML 167          
BLAST of CN188271 vs. ExPASy Swiss-Prot
Match: UBC7_WHEAT (Ubiquitin-conjugating enzyme E2 7 OS=Triticum aestivum GN=UBC7 PE=2 SV=1)

HSP 1 Score: 241.506 bits (615), Expect = 4.132e-63
Identity = 109/147 (74.15%), Postives = 125/147 (85.03%), Query Frame = -2
Query:  265 PVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFKKKVGRCVRRSQEML 705
            P  GF  G VD++N+FEW VTIIGPP+TLY+GG+FNAIMSFP NYPNSPPTV+FT+E+WHPNVYPDGRVCISI HPPGDDPNGYELASERW PVHTVE           SPNDESPAN+EAAK+WR+++D+FKKKV R VR+SQEML
Sbjct:   23 PSMGFQLGFVDDSNVFEWQVTIIGPPETLYDGGYFNAIMSFPQNYPNSPPTVRFTSEMWHPNVYPDGRVCISI-HPPGDDPNGYELASERWTPVHTVESIVLSIISMLSSPNDESPANIEAAKDWREKQDEFKKKVRRAVRKSQEML 168          
BLAST of CN188271 vs. ExPASy Swiss-Prot
Match: UBC15_SCHPO (Ubiquitin-conjugating enzyme E2 15 OS=Schizosaccharomyces pombe GN=ubc15 PE=2 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 3.876e-53
Identity = 97/152 (63.82%), Postives = 116/152 (76.32%), Query Frame = -2
Query:  265 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFKKKVGRCVRRSQEML 720
            ++ KNP  GFS GLVD+ +IFEW V IIGP DTLYEGGFF+A +SFP +YP  PP +KFTTEIWHPNV+P+G VCISILHPPGDD  GYE A ERW+PVH+ E           SPNDESPAN++AAKE+R+   +FKK+V R VRRS EM+
Sbjct:   16 EIQKNPPQGFSVGLVDDKSIFEWEVMIIGPEDTLYEGGFFHATLSFPQDYPLMPPKMKFTTEIWHPNVHPNGEVCISILHPPGDDKYGYEDAGERWLPVHSPETILISVISMLSSPNDESPANIDAAKEFRENPQEFKKRVRRLVRRSIEMI 167          
BLAST of CN188271 vs. ExPASy Swiss-Prot
Match: UB2G1_RAT (Ubiquitin-conjugating enzyme E2 G1 OS=Rattus norvegicus GN=Ube2g1 PE=2 SV=3)

HSP 1 Score: 200.29 bits (508), Expect = 1.056e-50
Identity = 92/151 (60.93%), Postives = 111/151 (73.51%), Query Frame = -2
Query:  271 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEAAKEWR-DRRDDFKKKVGRCVRRSQE 720
            +L KNPV GFSAGL+D+ +++ W V IIGPPDTLYEGG F A ++FP +YP  PP +KF TEIWHPNV  +G VCISILH PG+D  GYE   ERW+P+HTVE            PN +SPANV+AAKEWR DR  +FK+KV RCVR+SQE
Sbjct:   16 ELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPANVDAAKEWREDRNGEFKRKVARCVRKSQE 166          
BLAST of CN188271 vs. ExPASy Swiss-Prot
Match: UB2G1_MOUSE (Ubiquitin-conjugating enzyme E2 G1 OS=Mus musculus GN=Ube2g1 PE=2 SV=3)

HSP 1 Score: 200.29 bits (508), Expect = 1.056e-50
Identity = 92/151 (60.93%), Postives = 111/151 (73.51%), Query Frame = -2
Query:  271 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEAAKEWR-DRRDDFKKKVGRCVRRSQE 720
            +L KNPV GFSAGL+D+ +++ W V IIGPPDTLYEGG F A ++FP +YP  PP +KF TEIWHPNV  +G VCISILH PG+D  GYE   ERW+P+HTVE            PN +SPANV+AAKEWR DR  +FK+KV RCVR+SQE
Sbjct:   16 ELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPANVDAAKEWREDRNGEFKRKVARCVRKSQE 166          
BLAST of CN188271 vs. ExPASy Swiss-Prot
Match: UB2G1_HUMAN (Ubiquitin-conjugating enzyme E2 G1 OS=Homo sapiens GN=UBE2G1 PE=1 SV=3)

HSP 1 Score: 200.29 bits (508), Expect = 1.056e-50
Identity = 92/151 (60.93%), Postives = 111/151 (73.51%), Query Frame = -2
Query:  271 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEAAKEWR-DRRDDFKKKVGRCVRRSQE 720
            +L KNPV GFSAGL+D+ +++ W V IIGPPDTLYEGG F A ++FP +YP  PP +KF TEIWHPNV  +G VCISILH PG+D  GYE   ERW+P+HTVE            PN +SPANV+AAKEWR DR  +FK+KV RCVR+SQE
Sbjct:   16 ELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPANVDAAKEWREDRNGEFKRKVARCVRKSQE 166          
BLAST of CN188271 vs. ExPASy Swiss-Prot
Match: UB2G1_MACFA (Ubiquitin-conjugating enzyme E2 G1 OS=Macaca fascicularis GN=UBE2G1 PE=2 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 6.842e-50
Identity = 91/151 (60.26%), Postives = 110/151 (72.85%), Query Frame = -2
Query:  271 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEAAKEWR-DRRDDFKKKVGRCVRRSQE 720
            +L KNPV GFSAGL+D+ +++ W V IIGPPDTLYEGG F A ++FP +YP  PP +KF TEIWHPNV  +G VCISILH PG+D  GYE    RW+P+HTVE            PN +SPANV+AAKEWR DR  +FK+KV RCVR+SQE
Sbjct:   16 ELNKNPVEGFSAGLIDDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEGRWLPIHTVETIMISVISMLADPNGDSPANVDAAKEWREDRNGEFKRKVARCVRKSQE 166          
BLAST of CN188271 vs. ExPASy Swiss-Prot
Match: UBC7_CAEEL (Probable ubiquitin-conjugating enzyme E2 7 OS=Caenorhabditis elegans GN=ubc-7 PE=1 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 8.936e-50
Identity = 91/150 (60.67%), Postives = 109/150 (72.67%), Query Frame = -2
Query:  271 DLCKNPVAGFSAGLVDETNIFEWSVTIIGPPDTLYEGGFFNAIMSFPSNYPNSPPTVKFTTEIWHPNVYPDGRVCISILHPPGDDPNGYELASERWMPVHTVEXXXXXXXXXXXSPNDESPANVEAAKEWRDRRDDFKKKVGRCVRRSQE 720
            D+ + PV GFSAGLVD+ +I++W V +IGPPDTLYEGGFF AI+ FP +YP  PP +KF +EIWHPN+  +G VCISILH PGDD  GYE   ERW+PVHTVE            PN ESPANV+AAK  R+   +FKKKV +CVRRSQE
Sbjct:   14 DMRRVPVDGFSAGLVDDNDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPPKMKFISEIWHPNIDKEGNVCISILHDPGDDKWGYERPEERWLPVHTVETILLSVISMLTDPNFESPANVDAAKMQRENYAEFKKKVAQCVRRSQE 163          
The following BLAST results are available for this feature:
BLAST of CN188271 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 165
Match NameE-valueIdentityDescription
UBC13_ARATH4.869e-7282.12Ubiquitin-conjugating enzyme E2 13 OS=Arabidopsis ... [more]
UBC7_ARATH8.306e-7281.46Ubiquitin-conjugating enzyme E2 7 OS=Arabidopsis t... [more]
UBC14_ARATH1.123e-6878.29Ubiquitin-conjugating enzyme E2 14 OS=Arabidopsis ... [more]
UBC7_WHEAT4.132e-6374.15Ubiquitin-conjugating enzyme E2 7 OS=Triticum aest... [more]
UBC15_SCHPO3.876e-5363.82Ubiquitin-conjugating enzyme E2 15 OS=Schizosaccha... [more]
UB2G1_RAT1.056e-5060.93Ubiquitin-conjugating enzyme E2 G1 OS=Rattus norve... [more]
UB2G1_MOUSE1.056e-5060.93Ubiquitin-conjugating enzyme E2 G1 OS=Mus musculus... [more]
UB2G1_HUMAN1.056e-5060.93Ubiquitin-conjugating enzyme E2 G1 OS=Homo sapiens... [more]
UB2G1_MACFA6.842e-5060.26Ubiquitin-conjugating enzyme E2 G1 OS=Macaca fasci... [more]
UBC7_CAEEL8.936e-5060.67Probable ubiquitin-conjugating enzyme E2 7 OS=Caen... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005M07_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005M07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188271 ID=CN188271; Name=CN188271; organism=Citrus sinensis; type=EST; length=805bp
TTTTTTTTTTTTTTTTTAGAGAACGACAGAACATTTGTGATTAAAACTAA
CCAAAGAACGCTTTTGAATACATGGATGTTCCCAGTCGTTACAGTGACTT
GACCATGCAGAGAAAACGAGAGAGATGGTTGAGAGAACTTCAAAATGCCA
GTCTACACAAGACCAAGTACCCACAGAACCCAGTTCCCCCCACACAATTA
AATCAAGACATTTCCCGTACAAACACATAGGTAGAGAAAAAAAAGAGTGC
CTGCAGTTGGTTTACAACATTTCTTGTGATCTTCTCACACAGCGGCCTAC
TTTCTTCTTGAAGTCATCTCTCCTGTCTCTCCATTCTTTTGCAGCTTCGA
CATTTGCAGGAGATTCATCATTAGGACTGGAAAGCATTGATATGATACTC
AAAACGATACTTTCAACAGTATGAACAGGCATCCAGCGCTCACTTGCAAG
CTCATATCCATTAGGGTCGTCACCTGGAGGATGAAGGATTGATATGCAGA
CACGCCCATCCGGATAGACATTAGGATGCCAAATCTCTGTTGTAAACTTC
ACTGTAGGTGGGCTATTAGGGTAGTTTGATGGAAAGCTCATAATGGCATT
GAAAAATCCCCCCTCATAAAGAGTATCAGGTGGTCCAATAATTGTAACAC
TCCATTCAAAGATATTTGTCTCATCCACCAACCCGGCAGAAAACCCAGCA
ACAGGGTTCTTACAAAGATCTTTTAGTTGTTTTTGCAAGAGGAGACTTGC
CTGAGATGCCGCCATGATTTTAGTAGAGAGAGAGAGCTGGAATTGGCTCT
ACCTC
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