CN188255

Overview
NameCN188255
Unique NameCN188255
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length721
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN188255 vs. ExPASy Swiss-Prot
Match: RSP41_ARATH (Arginine/serine-rich-splicing factor RSP41 OS=Arabidopsis thaliana GN=RSP41 PE=1 SV=2)

HSP 1 Score: 107.457 bits (267), Expect = 7.701e-23
Identity = 88/235 (37.45%), Postives = 103/235 (43.83%), Query Frame = 2
Query:    5 SVEYAVRDDDDRRNGHXXXXXXXXXXXXXXXXXXXXXXXXXXXXDXXXXXXXXXXXXXXXXXDYGRVRSPSPYRRDRGSPDYGRNSSRSPYKKERAAIGHGRG-PSRSPYRRDR---------------GSPENGHGSSPSPYRKGK-----PSPNNGRGPSRS--PYE--RERPSPENXXXXXXXXXXXXXXXXDNGRVPSPNSMPEPRDSPGYDGADSPINERYRSRSPPAED 634
            SVEYAV+DDD R NG+                                                 R RSPSPYRR+RGSPDYGR +S   +K+ER +  +GRG  S SPY+R R                SPENG   + SP RKG+     P P   R  SRS  PYE  RE  SP                  +NG+V SP  + E     GYDGADSPI E   SRSPPAE+
Sbjct:  161 SVEYAVKDDDSRGNGYSPERRRDRSPDR-------------------------------------RRRSPSPYRRERGSPDYGRGASPVAHKRERTSPDYGRGRRSPSPYKRARLSPDYKRDDRRRERVASPENGAVRNRSP-RKGRGESRSPPPYEKRRESRSPPPYEKRRESRSPPPYEKRRERSRSRSKSSPENGQVESPGQIMEVEAGRGYDGADSPIRES-PSRSPPAEE 356          
BLAST of CN188255 vs. ExPASy Swiss-Prot
Match: RSP40_ARATH (Arginine/serine-rich-splicing factor RSP40 OS=Arabidopsis thaliana GN=RSP40 PE=1 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 8.515e-22
Identity = 78/226 (34.51%), Postives = 102/226 (45.13%), Query Frame = 2
Query:    5 SVEYAVRDDDDRRNGHXXXXXXXXXXXXXXXXXXXXXXXXXXXXDXXXXXXXXXXXXXXXXXDYGRVRSPSPYRRDRGSPDYGRNSSR-SPYKKERAAIGHGRGPSRSPYRRD-RGSPENGHG--SSPSPYR--------KGKPSPNNGR---GPSRSPYERERP-SPENXXXXXXXXXXXXXXXXDNGRVPSPNSMPEPRDSPGYDGADSPINERYRSRSPPAED 634
            SVEYAV+DDD R NGH                                                 R RSPSPY+R+RGSPDYGR +S  + Y+KER +  +GR  S SPY++  RGSPE G     + SP R        K   SPNN R    P+ SP+++E P +                   +NG+V SP S+       GYDGA+SP+ +    RSPPA++
Sbjct:  162 SVEYAVKDDDARGNGHSPERRRDRSPER-------------------------------------RRRSPSPYKRERGSPDYGRGASPVAAYRKERTSPDYGRRRSPSPYKKSRRGSPEYGRDRRGNDSPRRRERVASPTKYSRSPNNKRERMSPNHSPFKKESPRNGVGEVESPIERRERSRSSPENGQVESPGSIGRRDSDGGYDGAESPMQKSRSPRSPPADE 350          
The following BLAST results are available for this feature:
BLAST of CN188255 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
RSP41_ARATH7.701e-2337.45Arginine/serine-rich-splicing factor RSP41 OS=Arab... [more]
RSP40_ARATH8.515e-2234.51Arginine/serine-rich-splicing factor RSP40 OS=Arab... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0005L22_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005L22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188255 ID=CN188255; Name=CN188255; organism=Citrus sinensis; type=EST; length=721bp
GCAGTCAGTGGAATATGCAGTTCGTGATGACGATGACCGGAGAAATGGAC
ACAGTCCTGATAGAAATCGTGATAGGTCACCAGATAGGGGTAGGAGGAGA
TCTCCAAGTCCCTATAGAAGGGAAAGAGGTAGTCCTGATTATGGCCGTGG
CTCTAGCCGAAGTCCTTACAGGAGAGAGAGGGGTAGCCCTGATTATGGTC
GTGTTAGAAGCCCAAGTCCCTATAGGAGGGATCGGGGTAGCCCTGATTAC
GGTCGTAACTCCAGCCGCAGTCCTTACAAGAAAGAGAGAGCTGCTATTGG
TCATGGTCGAGGCCCTAGCCGTAGTCCTTATCGGAGGGACAGAGGTAGTC
CTGAGAATGGTCATGGATCCAGTCCTAGTCCTTATCGTAAGGGGAAACCT
AGTCCTAACAACGGTCGTGGCCCCAGCCGCAGTCCATATGAAAGAGAGAG
GCCTAGTCCTGAAAATGGTCGTGGAGGCAGCCGAAGTCCCTATAGAAGAG
AGAGGCCTAGCCCTGACAATGGTCGTGTTCCCAGTCCAAATTCAATGCCT
GAACCTAGGGATAGCCCTGGTTATGATGGAGCTGACAGCCCTATCAATGA
GAGATACCGCAGTCGTTCACCTCCAGCCGAGGACTGAACATGGTTCCCAG
AGGAGCCCTGGTCACAGAACTGACCAGGCCATTTTACAGCAACCATCCCA
ATTAGATCGTAATATCTGCTT
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