CN188254

Overview
NameCN188254
Unique NameCN188254
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length787
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CN188254 vs. ExPASy Swiss-Prot
Match: RSP41_ARATH (Arginine/serine-rich-splicing factor RSP41 OS=Arabidopsis thaliana GN=RSP41 PE=1 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 1.168e-22
Identity = 80/175 (45.71%), Postives = 93/175 (53.14%), Query Frame = -1 
Query:  332 SPDYGRVRSPSPYRRDRGSPDYGRNSSRSPYKKERAAIGHGRG-PSRSPYRRDR---------------GSPENGHGSSPSPYRKGK-----PSPNNGRGPSRS--PYE--RERPSPENXXXXXXXXXXXXXXXPDNGRVPSPNSMPEPRDSPGYDGADSPINERYRSRSPPAED 781
            SPD  R RSPSPYRR+RGSPDYGR +S   +K+ER +  +GRG  S SPY+R R                SPENG   + SP RKG+     P P   R  SRS  PYE  RE  SP                 P+NG+V SP  + E     GYDGADSPI E   SRSPPAE+
Sbjct:  185 SPDRRR-RSPSPYRRERGSPDYGRGASPVAHKRERTSPDYGRGRRSPSPYKRARLSPDYKRDDRRRERVASPENGAVRNRSP-RKGRGESRSPPPYEKRRESRSPPPYEKRRESRSPPPYEKRRERSRSRSKSSPENGQVESPGQIMEVEAGRGYDGADSPIRES-PSRSPPAEE 356
[Close]
BLAST of CN188254 vs. ExPASy Swiss-Prot
Match: RSP40_ARATH (Arginine/serine-rich-splicing factor RSP40 OS=Arabidopsis thaliana GN=RSP40 PE=1 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 1.094e-20
Identity = 66/161 (40.99%), Postives = 89/161 (55.28%), Query Frame = -1 
Query:  332 RVRSPSPYRRDRGSPDYGRNSSR-SPYKKERAAIGHGRGPSRSPYRRD-RGSPENGHG--SSPSPYR--------KGKPSPNNGR---GPSRSPYERERP-SPENXXXXXXXXXXXXXXXPDNGRVPSPNSMPEPRDSPGYDGADSPINERYRSRSPPAED 766
            R RSPSPY+R+RGSPDYGR +S  + Y+KER +  +GR  S SPY++  RGSPE G     + SP R        K   SPNN R    P+ SP+++E P +                  P+NG+V SP S+       GYDGA+SP+ +    RSPPA++
Sbjct:  190 RRRSPSPYKRERGSPDYGRGASPVAAYRKERTSPDYGRRRSPSPYKKSRRGSPEYGRDRRGNDSPRRRERVASPTKYSRSPNNKRERMSPNHSPFKKESPRNGVGEVESPIERRERSRSSPENGQVESPGSIGRRDSDGGYDGAESPMQKSRSPRSPPADE 350
The following BLAST results are available for this feature:
BLAST of CN188254 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
RSP41_ARATH1.168e-2245.71Arginine/serine-rich-splicing factor RSP41 OS=Arab... [more]
RSP40_ARATH1.094e-2040.99Arginine/serine-rich-splicing factor RSP40 OS=Arab... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0005L22_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005L22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188254 ID=CN188254; Name=CN188254; organism=Citrus sinensis; type=EST; length=787bp
TTTTTTTTTTTTTTCTACAATGGCTACTTAGTTCATTACCAACAATTAAA
ATCTTTCTTGAAGTTTTCAAGCAGAGACATGATAAAATGCATTAACAATG
TGAAATTAAGGTGATGCATAACAACATACTCCATACAAATGGCTACTTAG
TTCATTACCAACAATTAAAATCGTTCTTGAAGTTTGAGCAGAGACAGCTC
TAAACTAGAAACTGAACTAATTAGGACCTACATCACAAGTTCCAAAGCAG
ATATTACGATCTAATTGGGATGGTTGCTGTAAAATGGCCTGGTCAGTTCT
GTGACCAGGGCTCCTCTGGGAACCATGTTCAGTCCTCGGCTGGAGGTGAA
CGACTGCGGTATCTCTCATTGATAGGGCTGTCAGCTCCATCATAACCAGG
GCTATCCCTAGGTTCAGGCATTGAATTTGGACTGGGAACACGACCATTGT
CAGGGCTAGGCCTCTCTCTTCTATAGGGACTTCGGCTGCCTCCACGACCA
TTTTCAGGACTAGGCCTCTCTCTTTCATATGGACTGCGGCTGGGGCCACG
ACCGTTGTTAGGACTAGGTTTCCCCTTACGATAAGGACTAGGACTGGATC
CATGACCATTCTCAGGACTACCTCTGTCCCTCCGATAAGGACTACGGCTA
GGGCCTCGACCATGACCAATAGCAGCTCTCTCTTTCTTGTAAGGACTGCG
GCTGGAGTTACGACCGTAATCAGGGCTACCCCGATCCCTCCTATAGGGAC
TTGGGCTTCTAACACGACCATAATCAGGGCTACCCCT
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