CN188253

Overview
NameCN188253
Unique NameCN188253
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length612
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1009 contig Csv1_Contig1009:22..633. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188253 vs. ExPASy Swiss-Prot
Match: AG_TOBAC (Floral homeotic protein AGAMOUS OS=Nicotiana tabacum GN=AG1 PE=2 SV=1)

HSP 1 Score: 229.95 bits (585), Expect = 7.607e-60
Identity = 114/149 (76.51%), Postives = 134/149 (89.93%), Query Frame = 3
Query:  165 MAFPNELAAGREELSPKRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNSVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETR 611
            M F ++L     E+SP+RK+GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEV+LIVFSSRGRLYEY+NNSVK+TI+RYKKA +D+SNTGSI EANAQ+YQQEA+KLR QI N+QN NRNMLGESL+ L+ ++LKN+E +
Sbjct:    1 MDFQSDLT---REISPQRKLGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVKATIERYKKACSDSSNTGSISEANAQYYQQEASKLRAQIGNLQNQNRNMLGESLAALSLRDLKNLEQK 146          
BLAST of CN188253 vs. ExPASy Swiss-Prot
Match: AG_PETHY (Floral homeotic protein AGAMOUS OS=Petunia hybrida GN=AG1 PE=2 SV=1)

HSP 1 Score: 229.565 bits (584), Expect = 9.935e-60
Identity = 113/149 (75.84%), Postives = 133/149 (89.26%), Query Frame = 3
Query:  165 MAFPNELAAGREELSPKRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNSVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETR 611
            M F ++L     E+SP+RK+GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEV+LIVFSSRGRLYEY+NNSVK+TI+RYKKA +D+SNTGSI EANAQ+YQQEA+KLR QI N+QN NRN LGESL+ LN ++L+N+E +
Sbjct:    1 MEFQSDLT---REISPQRKLGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYANNSVKATIERYKKACSDSSNTGSIAEANAQYYQQEASKLRAQIGNLQNQNRNFLGESLAALNLRDLRNLEQK 146          
BLAST of CN188253 vs. ExPASy Swiss-Prot
Match: AG_SOLLC (Floral homeotic protein AGAMOUS OS=Solanum lycopersicum GN=AG1 PE=2 SV=1)

HSP 1 Score: 228.794 bits (582), Expect = 1.695e-59
Identity = 111/149 (74.50%), Postives = 133/149 (89.26%), Query Frame = 3
Query:  165 MAFPNELAAGREELSPKRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNSVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETR 611
            M F ++L     E+SP+RK+GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEV+L+VFS+RGRLYEY+NNSVK+TI+RYKKA +D+SNTGS+ EANAQ+YQQEA+KLR QI N+ N NRNM+GE+L+G+  KELKN+E R
Sbjct:    1 MDFQSDLT---REISPQRKLGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSNRGRLYEYANNSVKATIERYKKACSDSSNTGSVSEANAQYYQQEASKLRAQIGNLMNQNRNMMGEALAGMKLKELKNLEQR 146          
BLAST of CN188253 vs. ExPASy Swiss-Prot
Match: AG_BRANA (Floral homeotic protein AGAMOUS OS=Brassica napus GN=AG1 PE=2 SV=1)

HSP 1 Score: 217.624 bits (553), Expect = 3.907e-56
Identity = 110/149 (73.83%), Postives = 128/149 (85.91%), Query Frame = 3
Query:  165 MAFPNELAAGREELSPKRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNSVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETR 611
            MA+  EL     E SP+RK GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEV+LIVFSSRGRLYEYSNNSVK TI+RYKKA +D SNTGS+ E NAQ+YQQE+AKLR QI ++QNSNR ++GE++  ++ KEL+N+E R
Sbjct:    1 MAYQMELGG---ESSPQRKAGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNNSVKGTIERYKKAISDNSNTGSVAEINAQYYQQESAKLRQQIISIQNSNRQLMGETIGSMSPKELRNLEGR 146          
BLAST of CN188253 vs. ExPASy Swiss-Prot
Match: AG_PANGI (Floral homeotic protein AGAMOUS OS=Panax ginseng GN=AG2 PE=2 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 8.703e-56
Identity = 105/136 (77.21%), Postives = 123/136 (90.44%), Query Frame = 3
Query:  204 LSPKRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNSVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETR 611
            LSP+RK+GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEV+LIVFS+RGRLYEY+NNSVK TI+RYKKA  D+ NT S+ EANAQFYQQEA+KLR +IS++Q +NRNM+GESL  L  ++LK +ET+
Sbjct:   11 LSPQRKLGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANNSVKGTIERYKKACTDSPNTSSVSEANAQFYQQEASKLRQEISSIQKNNRNMMGESLGSLTVRDLKGLETK 146          
BLAST of CN188253 vs. ExPASy Swiss-Prot
Match: AG_ARATH (Floral homeotic protein AGAMOUS OS=Arabidopsis thaliana GN=AG PE=1 SV=2)

HSP 1 Score: 216.468 bits (550), Expect = 8.703e-56
Identity = 109/149 (73.15%), Postives = 128/149 (85.91%), Query Frame = 3
Query:  165 MAFPNELAAGREELSPKRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNSVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETR 611
            MA+ +EL     + SP RK GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEV+LIVFSSRGRLYEYSNNSVK TI+RYKKA +D SNTGS+ E NAQ+YQQE+AKLR QI ++QNSNR ++GE++  ++ KEL+N+E R
Sbjct:    1 MAYQSELGG---DSSPLRKSGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSNNSVKGTIERYKKAISDNSNTGSVAEINAQYYQQESAKLRQQIISIQNSNRQLMGETIGSMSPKELRNLEGR 146          
BLAST of CN188253 vs. ExPASy Swiss-Prot
Match: AGL5_ARATH (Agamous-like MADS-box protein AGL5 OS=Arabidopsis thaliana GN=AGL5 PE=2 SV=1)

HSP 1 Score: 209.149 bits (531), Expect = 1.389e-53
Identity = 103/144 (71.53%), Postives = 122/144 (84.72%), Query Frame = 3
Query:  180 ELAAGREELSPKRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNSVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETR 611
            E  A  E     +K+GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEV+L++FS+RGRLYEY+NNSV+ TI+RYKKA +D  N  +I EAN Q+YQQEA+KLR QI ++QN NR++LGESL  LNFKELKN+E+R
Sbjct:    2 EGGASNEVAESSKKIGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVIFSTRGRLYEYANNSVRGTIERYKKACSDAVNPPTITEANTQYYQQEASKLRRQIRDIQNLNRHILGESLGSLNFKELKNLESR 145          
BLAST of CN188253 vs. ExPASy Swiss-Prot
Match: AGL1_ARATH (Agamous-like MADS-box protein AGL1 OS=Arabidopsis thaliana GN=AGL1 PE=1 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 2.370e-53
Identity = 101/144 (70.14%), Postives = 121/144 (84.03%), Query Frame = 3
Query:  180 ELAAGREELSPKRKMGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNSVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETR 611
            E      +    +K+GRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEV+L++FS+RGRLYEY+NNSV+ TI+RYKKA +D  N  S+ EAN Q+YQQEA+KLR QI ++QNSNR+++GESL  LNFKELKN+E R
Sbjct:    2 EEGGSSHDAESSKKLGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVIFSTRGRLYEYANNSVRGTIERYKKACSDAVNPPSVTEANTQYYQQEASKLRRQIRDIQNSNRHIVGESLGSLNFKELKNLEGR 145          
BLAST of CN188253 vs. ExPASy Swiss-Prot
Match: AGL11_ARATH (Agamous-like MADS-box protein AGL11 OS=Arabidopsis thaliana GN=AGL11 PE=2 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 1.699e-51
Identity = 97/130 (74.62%), Postives = 118/130 (90.77%), Query Frame = 3
Query:  222 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNSVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETR 611
            MGRGKIEIKRIEN+TNRQVTFCKRRNGLLKKAYELSVLCDAEV+LIVFS+RGRLYEY+NN+++STI+RYKKA +D++NT ++ E NA +YQQE+AKLR QI  +QNSNRN++G+SLS L+ KELK +E R
Sbjct:    1 MGRGKIEIKRIENSTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSTRGRLYEYANNNIRSTIERYKKACSDSTNTSTVQEINAAYYQQESAKLRQQIQTIQNSNRNLMGDSLSSLSVKELKQVENR 130          
BLAST of CN188253 vs. ExPASy Swiss-Prot
Match: MAD58_ORYSJ (MADS-box transcription factor 58 OS=Oryza sativa subsp. japonica GN=MADS58 PE=2 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 4.942e-51
Identity = 101/150 (67.33%), Postives = 123/150 (82.00%), Query Frame = 3
Query:  165 MAFPNELAAGREELSPKRKMG-RGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNSVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETR 611
            +A P    +G        K+G RGKIEIKRIENTTNRQVTFCKRR+GLLKKAYELSVLCDAEV+L+VFSSRGRLYEYSNNSVK TI+RYKKA +DTSN  ++ E NAQ YQQEAAKL+ QI+N+QNSNR ++G++++ +N +ELK +E R
Sbjct:   23 VASPGSGGSGGSGSVGAEKIGSRGKIEIKRIENTTNRQVTFCKRRSGLLKKAYELSVLCDAEVALVVFSSRGRLYEYSNNSVKETIERYKKANSDTSNASTVAEINAQHYQQEAAKLKQQITNLQNSNRTLVGDNITTMNHRELKQLEGR 172          
The following BLAST results are available for this feature:
BLAST of CN188253 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 121
Match NameE-valueIdentityDescription
AG_TOBAC7.607e-6076.51Floral homeotic protein AGAMOUS OS=Nicotiana tabac... [more]
AG_PETHY9.935e-6075.84Floral homeotic protein AGAMOUS OS=Petunia hybrida... [more]
AG_SOLLC1.695e-5974.50Floral homeotic protein AGAMOUS OS=Solanum lycoper... [more]
AG_BRANA3.907e-5673.83Floral homeotic protein AGAMOUS OS=Brassica napus ... [more]
AG_PANGI8.703e-5677.21Floral homeotic protein AGAMOUS OS=Panax ginseng G... [more]
AG_ARATH8.703e-5673.15Floral homeotic protein AGAMOUS OS=Arabidopsis tha... [more]
AGL5_ARATH1.389e-5371.53Agamous-like MADS-box protein AGL5 OS=Arabidopsis ... [more]
AGL1_ARATH2.370e-5370.14Agamous-like MADS-box protein AGL1 OS=Arabidopsis ... [more]
AGL11_ARATH1.699e-5174.62Agamous-like MADS-box protein AGL11 OS=Arabidopsis... [more]
MAD58_ORYSJ4.942e-5167.33MADS-box transcription factor 58 OS=Oryza sativa s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005L21_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005L21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188253 ID=CN188253; Name=CN188253; organism=Citrus sinensis; type=EST; length=612bp
AGTTGCTTCTCTCCCTGCTCTGTTCTCATTTTTTGTTACCTTAGAAAGAA
GAGAGAAATCCCAAATCCTGCTGAATCCTGCTGAAACCTTTGTTTCTGCT
GTCCTTTTGATTCTCAAAATCATTCTACATTCCTTTGGTTAGATAGCAGG
TGGTCAAGAAAAGAATGGCGTTTCCAAATGAATTAGCAGCAGGAAGAGAG
GAATTATCACCAAAGAGAAAAATGGGGAGAGGAAAGATCGAGATCAAGCG
GATCGAAAACACAACAAATCGCCAAGTGACCTTCTGCAAGAGGCGCAATG
GTTTGCTCAAGAAAGCTTACGAATTATCTGTTCTTTGTGATGCTGAGGTT
TCTCTTATCGTCTTCTCCAGCCGCGGCCGCCTTTATGAGTATTCCAACAA
CAGTGTGAAATCAACAATTGACAGGTACAAGAAGGCCACTGCAGATACCT
CAAATACTGGGTCTATCTGTGAAGCAAATGCTCAGTTCTACCAGCAAGAA
GCTGCCAAGCTGAGGATACAAATTAGCAATATGCAAAATTCAAACAGAAA
CATGTTGGGTGAATCACTAAGTGGGTTAAATTTCAAGGAACTCAAGAACA
TGGAGACTCGTT
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