CN188252

Overview
NameCN188252
Unique NameCN188252
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length723
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1009 contig Csv1_Contig1009:514..1236. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188252 vs. ExPASy Swiss-Prot
Match: AG_PANGI (Floral homeotic protein AGAMOUS OS=Panax ginseng GN=AG2 PE=2 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 9.652e-50
Identity = 96/135 (71.11%), Postives = 113/135 (83.70%), Query Frame = -3
Query:  317 QEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKIAENERGQQNMNLMQGGSSYEIIQSQPFDSRSYFQVNALQPTNHYPRQDQMALQLV 721
            QEA+KLR +IS++Q +NRNM+GESL  L  ++LK +ET+LEKGISRIRSKKNELLFAEIEYMQK+E+DLHN+NQ LRAKIAENER QQ+MNLM G S YE+   Q FD R+Y Q+N LQP NHY RQDQ ALQLV
Sbjct:  108 QEASKLRQEISSIQKNNRNMMGESLGSLTVRDLKGLETKLEKGISRIRSKKNELLFAEIEYMQKKEIDLHNNNQYLRAKIAENERAQQHMNLMPGSSDYELAPPQSFDGRNYIQLNGLQPNNHYSRQDQTALQLV 242          
BLAST of CN188252 vs. ExPASy Swiss-Prot
Match: AG_PETHY (Floral homeotic protein AGAMOUS OS=Petunia hybrida GN=AG1 PE=2 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 1.180e-47
Identity = 95/136 (69.85%), Postives = 113/136 (83.09%), Query Frame = -3
Query:  317 QEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKIAENERGQQNMNLMQGGSSYEII-QSQPFDSRSYFQVNALQPTNHYPRQDQMALQLV 721
            QEA+KLR QI N+QN NRN LGESL+ LN ++L+N+E ++EKGIS+IR+KKNELLFAEIEYMQKRE+DLHN+NQ LRAKIAE ER QQ MNLM G SSY+++   Q FD+R+Y QVN LQ  NHYPRQDQ  LQLV
Sbjct:  108 QEASKLRAQIGNLQNQNRNFLGESLAALNLRDLRNLEQKIEKGISKIRAKKNELLFAEIEYMQKREIDLHNNNQYLRAKIAETERSQQ-MNLMPGSSSYDLVPPQQSFDARNYLQVNGLQTNNHYPRQDQPPLQLV 242          
BLAST of CN188252 vs. ExPASy Swiss-Prot
Match: AG_TOBAC (Floral homeotic protein AGAMOUS OS=Nicotiana tabacum GN=AG1 PE=2 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 7.648e-47
Identity = 96/141 (68.09%), Postives = 113/141 (80.14%), Query Frame = -3
Query:  317 QEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKIAENERG-----QQNMNLMQGGSSYEII-QSQPFDSRSYFQVNALQPTNHYPRQDQMALQLV 721
            QEA+KLR QI N+QN NRNMLGESL+ L+ ++LKN+E ++EKGIS+IRSKKNELLFAEIEYMQKRE+DLHN+NQ LRAKIAE ER      QQ MNLM G SSYE++     FD+R+Y QVN LQ  NHY RQDQ +LQLV
Sbjct:  108 QEASKLRAQIGNLQNQNRNMLGESLAALSLRDLKNLEQKIEKGISKIRSKKNELLFAEIEYMQKREIDLHNNNQYLRAKIAETERAQQQQQQQQMNLMPGSSSYELVPPPHQFDTRNYLQVNGLQTNNHYTRQDQPSLQLV 248          
BLAST of CN188252 vs. ExPASy Swiss-Prot
Match: AG_SOLLC (Floral homeotic protein AGAMOUS OS=Solanum lycopersicum GN=AG1 PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 2.225e-46
Identity = 97/141 (68.79%), Postives = 113/141 (80.14%), Query Frame = -3
Query:  317 QEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKIAENERGQ---QNMNLMQGGSS--YEII-QSQPFDSRSYFQVNALQPTNHYPRQDQMALQLV 721
            QEA+KLR QI N+ N NRNM+GE+L+G+  KELKN+E R+EKGIS+IRSKKNELLFAEIEYMQKREVDLHN+NQ LRAKIAE ER Q   Q MNLM G SS  +E++   Q FD+R+Y QVN LQ  NHYPRQDQ  +QLV
Sbjct:  108 QEASKLRAQIGNLMNQNRNMMGEALAGMKLKELKNLEQRIEKGISKIRSKKNELLFAEIEYMQKREVDLHNNNQYLRAKIAETERAQHQHQQMNLMPGSSSNYHELVPPPQQFDTRNYLQVNGLQTNNHYPRQDQPPIQLV 248          
BLAST of CN188252 vs. ExPASy Swiss-Prot
Match: AG_ARATH (Floral homeotic protein AGAMOUS OS=Arabidopsis thaliana GN=AG PE=1 SV=2)

HSP 1 Score: 179.874 bits (455), Expect = 1.221e-44
Identity = 94/145 (64.83%), Postives = 117/145 (80.69%), Query Frame = -3
Query:  317 QEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKIAENERGQQNMNLMQGGSSYEII------QSQPFDSRSYFQVNALQPTNHY----PRQDQMALQLV 721
            QE+AKLR QI ++QNSNR ++GE++  ++ KEL+N+E RLE+ I+RIRSKKNELLF+EI+YMQKREVDLHN NQ+LRAKIAENER   +++LM GGS+YE +      QSQPFDSR+YFQV ALQP NH+     RQDQ ALQLV
Sbjct:  108 QESAKLRQQIISIQNSNRQLMGETIGSMSPKELRNLEGRLERSITRIRSKKNELLFSEIDYMQKREVDLHNDNQILRAKIAENERNNPSISLMPGGSNYEQLMPPPQTQSQPFDSRNYFQVAALQPNNHHYSSAGRQDQTALQLV 252          
BLAST of CN188252 vs. ExPASy Swiss-Prot
Match: AG_BRANA (Floral homeotic protein AGAMOUS OS=Brassica napus GN=AG1 PE=2 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.595e-44
Identity = 94/145 (64.83%), Postives = 116/145 (80.00%), Query Frame = -3
Query:  317 QEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKIAENERGQQNMNLMQGGSSYEII------QSQPFDSRSYFQVNALQPTNHY----PRQDQMALQLV 721
            QE+AKLR QI ++QNSNR ++GE++  ++ KEL+N+E RL++ ++RIRSKKNELLFAEI+YMQKREVDLHN NQLLRAKIAENER   +M+LM GGS+YE I      Q QPFDSR+YFQV ALQP NH+     R+DQ ALQLV
Sbjct:  108 QESAKLRQQIISIQNSNRQLMGETIGSMSPKELRNLEGRLDRSVNRIRSKKNELLFAEIDYMQKREVDLHNDNQLLRAKIAENERNNPSMSLMPGGSNYEQIMPPPQTQPQPFDSRNYFQVAALQPNNHHYSSAGREDQTALQLV 252          
BLAST of CN188252 vs. ExPASy Swiss-Prot
Match: AGL1_ARATH (Agamous-like MADS-box protein AGL1 OS=Arabidopsis thaliana GN=AGL1 PE=1 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 6.715e-35
Identity = 84/143 (58.74%), Postives = 105/143 (73.43%), Query Frame = -3
Query:  317 QEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKIAENER---GQQNMNLMQGGSSYEI-----IQSQPFDSRSYFQVNALQPTNHYPRQDQMALQLV 721
            QEA+KLR QI ++QNSNR+++GESL  LNFKELKN+E RLEKGISR+RSKKNELL AEIEYMQKRE++L ++N  LRAKIAE  R    QQ  +++QG + YE       QSQ + +R+Y  VN L+P   +  QDQ  LQLV
Sbjct:  107 QEASKLRRQIRDIQNSNRHIVGESLGSLNFKELKNLEGRLEKGISRVRSKKNELLVAEIEYMQKREMELQHNNMYLRAKIAEGARLNPDQQESSVIQGTTVYESGVSSHDQSQHY-NRNYIPVNLLEPNQQFSGQDQPPLQLV 248          
BLAST of CN188252 vs. ExPASy Swiss-Prot
Match: MADS3_ORYSJ (MADS-box transcription factor 3 OS=Oryza sativa subsp. japonica GN=MADS3 PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.266e-33
Identity = 69/132 (52.27%), Postives = 103/132 (78.03%), Query Frame = -3
Query:  335 QEAAKLRIQISNMQNSN-RNMLGESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKIAENERGQQNMNLMQGGSS--YEIIQSQPFDSRSYFQVNALQPTNHYPRQDQ 721
            QE++KLR QIS++QN+N R ++G+S++ ++ ++LK +E RLEKGI++IR++KNELL+AE+EYMQKREV+L N N  LR+K+ ENERGQQ +N+M   S+  Y+ + + P+DSR++ QVN +Q   HY  Q Q
Sbjct:   92 QESSKLRQQISSLQNANSRTIVGDSINTMSLRDLKQVENRLEKGIAKIRARKNELLYAEVEYMQKREVELQNDNMYLRSKVVENERGQQPLNMMGAASTSEYDHMVNNPYDSRNFLQVNIMQQPQHYAHQLQ 223          
BLAST of CN188252 vs. ExPASy Swiss-Prot
Match: AGL5_ARATH (Agamous-like MADS-box protein AGL5 OS=Arabidopsis thaliana GN=AGL5 PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 4.074e-32
Identity = 77/140 (55.00%), Postives = 98/140 (70.00%), Query Frame = -3
Query:  317 QEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKIAENE-RGQQNMNLMQGGSSYEIIQSQPFDS----RSYFQVNALQPTNHYPRQDQMALQLV 721
            QEA+KLR QI ++QN NR++LGESL  LNFKELKN+E+RLEKGISR+RSKK+E+L AEIEYMQKRE++L N N  LR+KI E     QQ  +++  G+ YE   +    S    R+Y  VN L+P  +   QDQ  LQLV
Sbjct:  107 QEASKLRRQIRDIQNLNRHILGESLGSLNFKELKNLESRLEKGISRVRSKKHEMLVAEIEYMQKREIELQNDNMYLRSKITERTGLQQQESSVIHQGTVYESGVTSSHQSGQYNRNYIAVNLLEPNQNSSNQDQPPLQLV 246          
BLAST of CN188252 vs. ExPASy Swiss-Prot
Match: MAD58_ORYSJ (MADS-box transcription factor 58 OS=Oryza sativa subsp. japonica GN=MADS58 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.548e-31
Identity = 63/129 (48.84%), Postives = 97/129 (75.19%), Query Frame = -3
Query:  338 QEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLHNSNQLLRAKIAENERGQQNMNLMQGGSSYEIIQSQ-PFDSRSYFQVNALQPTNHYPRQD 721
            QEAAKL+ QI+N+QNSNR ++G++++ +N +ELK +E RL+KG+ +IR++KNELL AEIEYMQ+RE +L N N  L++K+AE+ERG Q +N+M   S+ E +Q+   +D R++ Q N +    +YP Q+
Sbjct:  134 QEAAKLKQQITNLQNSNRTLVGDNITTMNHRELKQLEGRLDKGLGKIRARKNELLCAEIEYMQRRETELQNDNMYLKSKVAESERGLQTVNMMGSASTSEYVQNMIHYDPRNFLQFNIMHQPQYYPEQE 262          
The following BLAST results are available for this feature:
BLAST of CN188252 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
AG_PANGI9.652e-5071.11Floral homeotic protein AGAMOUS OS=Panax ginseng G... [more]
AG_PETHY1.180e-4769.85Floral homeotic protein AGAMOUS OS=Petunia hybrida... [more]
AG_TOBAC7.648e-4768.09Floral homeotic protein AGAMOUS OS=Nicotiana tabac... [more]
AG_SOLLC2.225e-4668.79Floral homeotic protein AGAMOUS OS=Solanum lycoper... [more]
AG_ARATH1.221e-4464.83Floral homeotic protein AGAMOUS OS=Arabidopsis tha... [more]
AG_BRANA1.595e-4464.83Floral homeotic protein AGAMOUS OS=Brassica napus ... [more]
AGL1_ARATH6.715e-3558.74Agamous-like MADS-box protein AGL1 OS=Arabidopsis ... [more]
MADS3_ORYSJ1.266e-3352.27MADS-box transcription factor 3 OS=Oryza sativa su... [more]
AGL5_ARATH4.074e-3255.00Agamous-like MADS-box protein AGL5 OS=Arabidopsis ... [more]
MAD58_ORYSJ1.548e-3148.84MADS-box transcription factor 58 OS=Oryza sativa s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005L21_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005L21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188252 ID=CN188252; Name=CN188252; organism=Citrus sinensis; type=EST; length=723bp
TTTTTTTTTTTTTTTCTAATCATTAATATCATATTCGAAATTAATATAAA
ATGTCTTAGACTTTGTGTTTGCATTAGGCATACAGAATATGAATTCATGG
CTGACAAACATATATATAATATTTATGAGTCTTAAAATAGTTTATATAGC
TACTAGCTTAGGCCCCTGATGATCACTTAATTAAGCAAAGTTGATTTCTT
CGCTGCATCTTATAGCAATTTTGAGCGCGCACCTGCACACCTTTTATCTA
GAATGAAGTAATAGCTAGATACCCTCCATAGGATATGACATGGCAGAATA
TTCTTCAAACATATTAAACTAACTGAAGGGCCATCTGATCCTGGCGTGGG
TAATGATTGGTGGGCTGTAATGCATTGACTTGGAAATAGCTCCGGGAATC
AAATGGCTGAGACTGTATAATCTCGTAGCTACTCCCTCCTTGCATCAAAT
TCATGTTCTGCTGTCCTCTTTCATTCTCGGCTATCTTTGCTCGGAGAAGC
TGGTTGCTGTTGTGCAAGTCAACTTCCCTCTTCTGCATGTACTCAATTTC
TGCAAACAGCAGCTCATTCTTTTTAGATCGGATTCTGCTAATACCTTTCT
CTAAACGAGTCTCCATGTTCTTGAGTTCCTTGAAATTTAACCCACTTAGT
GATTCACCCAACATGTTTCTGTTTGAATTTTGCATATTGCTAATTTGTAT
CCTCAGCTTGGCAGCTTCTTGCT
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