CN188249

Overview
NameCN188249
Unique NameCN188249
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length784
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN188249_ssr124 microsatellite CN188249_ssr124:124..133. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
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BLAST of CN188249 vs. ExPASy Swiss-Prot
Match: Y3272_ARATH (Kelch repeat-containing protein At3g27220 OS=Arabidopsis thaliana GN=At3g27220 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 7.784e-19
Identity = 59/130 (45.38%), Postives = 76/130 (58.46%), Query Frame = 1 
Query:  328 SPARVVLSI-FVMILGFALVADFFWASSSKFTSSYLNIASNWSPYHNSII----LPNNGPQKGENIGVKTKKDVVPKRILPATFQDLPAPELKWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVRS 702
            S  R++L + F  +LG   +A F   SSS    S   + S W P +   I    + +   QK       TK  V   R L A F D+PAPELKWE+M++APVPRLDG ++QI NLLYVF+GYGS+DYV S
Sbjct:   14 SSRRLMLVLYFTSVLGIGFIAAFLCLSSS--IPSVSAVFSIWVPVNRPEIQIPIIDSKIVQKRSKQSNDTKDHV---RFLSAIFADIPAPELKWEEMESAPVPRLDGYSVQINNLLYVFSGYGSLDYVHS 138
The following BLAST results are available for this feature:
BLAST of CN188249 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y3272_ARATH7.784e-1945.38Kelch repeat-containing protein At3g27220 OS=Arabi... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0005L19_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005L19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188249 ID=CN188249; Name=CN188249; organism=Citrus sinensis; type=EST; length=784bp
ATTTATCGTAGAGTAACAAAATTACAAAAATGCCGATGTCCGCGGTGAGC
CGGTGACAGCGTGTGCGTGTGATGAGGGCCCGGGTCGGATCTGTCCCATT
TCAAGATCGGTCCAATTTTTTACAGAGAGAGAGCGAGATACACAGAGCGA
GTGTCAGTGAGAAGCTTGAAGAAAGAAGAGTCAATTCCACTTCTCTTTCT
TCCTCGACGAATAAATGTATATCCCCATACGCGCATAATCACATGGTAGA
ATCTTTGATTTGATTTTGATACATTGTTACAGAGAGATATGGGACGCTCA
TTCGTCGGGAAAAACTCGACGACGCCGTCGCCGGCGAGAGTGGTATTGTC
GATATTTGTGATGATTCTAGGGTTTGCATTAGTCGCTGATTTCTTCTGGG
CTTCTTCTTCTAAATTCACTTCTTCTTACTTAAACATCGCCTCCAATTGG
TCCCCTTATCATAATTCCATAATCTTGCCCAATAATGGCCCACAAAAGGG
AGAAAATATTGGAGTTAAAACTAAGAAGGATGTTGTTCCTAAGAGGATCT
TACCAGCAACTTTTCAAGATTTACCTGCACCAGAATTGAAATGGGAAAAG
ATGAAAGCAGCACCAGTGCCTCGTCTAGATGGGGCAGCTATACAGATTAA
GAATCTTCTTTATGTGTTTGCTGGATATGGCAGCATCGACTATGTGAGAA
GCTTCTACTGAACCCATTTTTGTGGAATTTATTTTCTGTTTAAATTTCAT
CATGTAATTTTCTTGGAATTGTCAAAGTATATGA
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