CN188248

Overview
NameCN188248
Unique NameCN188248
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length777
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN188248_ssr740 microsatellite CN188248_ssr740:740..749. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN188248 vs. ExPASy Swiss-Prot
Match: Y3272_ARATH (Kelch repeat-containing protein At3g27220 OS=Arabidopsis thaliana GN=At3g27220 PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 7.625e-19
Identity = 59/130 (45.38%), Postives = 76/130 (58.46%), Query Frame = -2 
Query:  171 SPARVVLSI-FVMILGFALVADFFWASSSKFTSSYLNIASNWSPYHNSII----LPNNGPQKGENIGVKTKKDVVPKRILPATFQDLPAPELKWEKMKAAPVPRLDGAAIQIKNLLYVFAGYGSIDYVRS 545
            S  R++L + F  +LG   +A F   SSS    S   + S W P +   I    + +   QK       TK  V   R L A F D+PAPELKWE+M++APVPRLDG ++QI NLLYVF+GYGS+DYV S
Sbjct:   14 SSRRLMLVLYFTSVLGIGFIAAFLCLSSS--IPSVSAVFSIWVPVNRPEIQIPIIDSKIVQKRSKQSNDTKDHV---RFLSAIFADIPAPELKWEEMESAPVPRLDGYSVQINNLLYVFSGYGSLDYVHS 138
The following BLAST results are available for this feature:
BLAST of CN188248 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y3272_ARATH7.625e-1945.38Kelch repeat-containing protein At3g27220 OS=Arabi... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0005L19_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005L19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188248 ID=CN188248; Name=CN188248; organism=Citrus sinensis; type=EST; length=777bp
CCCTTTTTTTTTTTTTTTTATCATTTATATTAGAGACATGTTCTGTTTTG
CCTTTACAAGCTCTGCTAAACAGAGCAACAGATGTTATTCATATACTTTG
ACAATTCCAAGAAAATTACATGATGAAATTTAAACAGAAAATAAATTCCA
CAAAAATGGGTTCAGTAGAAGCTTCTCACATAGTCGATGCTGCCATATCC
AGCAAACACATAAAGAAGATTCTTAATCTGTATAGCTGCCCCATCTAGAC
GAGGCACTGGTGCTGCTTTCATCTTTTCCCATTTCAATTCTGGTGCAGGT
AAATCTTGAAAAGTTGCTGGTAAGATCCTCTTAGGAACAACATCCTTCTT
AGTTTTAACTCCAATATTTTCTCCCTTTTGTGGGCCATTATTGGGCAAGA
TTATGGAATTATGATAAGGGGACCAATTGGAGGCGATGTTTAAGTAAGAA
GAAGTGAATTTAGAAGAAGAAGCCCAGAAGAAATCAGCGACTAATGCAAA
CCCTAGAATCATCACAAATATCGACAATACCACTCTCGCCGGCGACGGCG
TCGTCGAGTTTTTCCCGACGAATGAGCGTCCCATATCTCTCTGTAACAAT
GTATCAAAATCAAATCAAAGATTCTACCATGTGATTATGCGCGTATGGGG
ATATACATTTATTCGTCGAGGAAGAAAGAGAAGTGGAATTGACTCTTCTT
TCTTCAAGCTTCTCACTGACACTCGCTCTGTGTATCTCGCTCTCTCTCTG
TAAAAAATTGGACCGATCTTGAAATGG
back to top