CN188247

Overview
NameCN188247
Unique NameCN188247
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length631
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9501 contig Csv1_Contig9501:556..1186. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188247 vs. ExPASy Swiss-Prot
Match: MOSC1_HUMAN (MOSC domain-containing protein 1, mitochondrial OS=Homo sapiens GN=MOSC1 PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 4.902e-17
Identity = 51/135 (37.78%), Postives = 77/135 (57.04%), Query Frame = 3
Query:    6 FSDCYPFMLLSHGSLDALNKLLKEPIPINRFRPNILVDGCEPFSEDLWTGIRINNCTFQGVKLCDRCKVPTINQDTGV-AGPEPSETLRQIRSDKVLRPNQKQQGKI-YFGQNLVWKDNLSNGKVLKLGDPVFVM 404
            +SD  PF++LS  SL  LN  L++ +    FRPNI++ GC+ ++ED W  + I +   + V  C RC + T++ DTGV +  EP ETL+  R  +     +K  GK   FGQ  V    L N   +K+GDPV+++
Sbjct:  207 YSDTSPFLILSEASLADLNSRLEKKVKATNFRPNIVISGCDVYAEDSWDELLIGDVELKRVMACSRCILTTVDPDTGVMSRKEPLETLKSYR--QCDPSERKLYGKSPLFGQYFV----LENPGTIKVGDPVYLL 335          
BLAST of CN188247 vs. ExPASy Swiss-Prot
Match: MOSC2_BOVIN (MOSC domain-containing protein 2, mitochondrial OS=Bos taurus GN=MOSC2 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 6.402e-17
Identity = 52/138 (37.68%), Postives = 73/138 (52.90%), Query Frame = 3
Query:    6 FSDCYPFMLLSHGSLDALNKLLKEPIPINRFRPNILVDGCEPFSEDLWTGIRINNCTFQGVKLCDRCKVPTINQDTGVAG-PEPSETLRQIR----SDKVLRPNQKQQGKIYFGQNLVWKDNLSNGKVLKLGDPVFVM 404
            + DC P M+LS  SL  LN  +++ + IN FRPNI+V GC  F ED W  + I N   + +  C RC + T++ DTGV    EP ETL+  R    S+K +  +    G IY+    +          LK+GDPV+ M
Sbjct:  206 YPDCSPVMILSEASLADLNTRMEKKVKINNFRPNIVVTGCSAFEEDTWDELLIGNVEMKKILACPRCIMTTVDPDTGVIDRKEPLETLKSYRLCDPSEKSIYKSSPLFG-IYYSVEKIGS--------LKVGDPVYQM 334          
BLAST of CN188247 vs. ExPASy Swiss-Prot
Match: MOSC1_MOUSE (MOSC domain-containing protein 1, mitochondrial OS=Mus musculus GN=Mosc1 PE=1 SV=2)

HSP 1 Score: 85.8853 bits (211), Expect = 1.863e-16
Identity = 49/136 (36.03%), Postives = 77/136 (56.62%), Query Frame = 3
Query:    6 FSDCYPFMLLSHGSLDALNKLLKEPIPINRFRPNILVDGCEPFSEDLWTGIRINNCTFQGVKLCDRCKVPTINQDTGVAG-PEPSETLRQIRSDKVLRPN-QKQQGKI-YFGQNLVWKDNLSNGKVLKLGDPVFVM 404
            +SD  PF++LS  SL+ LN  L+  +    FRPNI++ GC  ++ED W  + I +   + V  C RC + T++ DTG++   EP ETL+  R   +  P+ Q   GK+  FGQ       L N   +++GDPV+++
Sbjct:  210 YSDASPFLVLSEASLEDLNSRLERRVKATNFRPNIVISGCGVYAEDSWNEVLIGDVELKRVMACTRCLLTTVDPDTGISDRKEPLETLKSYR---LCDPSEQALYGKLPIFGQYFA----LENPGTIRVGDPVYLL 338          
BLAST of CN188247 vs. ExPASy Swiss-Prot
Match: MOSC1_XENLA (MOSC domain-containing protein 1, mitochondrial OS=Xenopus laevis GN=mosc1 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.177e-16
Identity = 52/138 (37.68%), Postives = 76/138 (55.07%), Query Frame = 3
Query:    6 FSDCYPFMLLSHGSLDALNKLLKEPIPINRFRPNILVDGCEPFSEDLWTGIRINNCTFQGVKLCDRCKVPTINQDTGV-AGPEPSETLRQIR-SDKVLRPNQKQQGKIYFGQNLVWKDNLSNGKVLKLGDPVF-VMRK 410
            + D  P MLLS  S++ALN  L++P+ +  FRP I+  GCE F+ED W  +R+     + V  C RC + T+N ++GV    EP +TLR  R SD  L+   K      FGQ       +    ++++GDPV+ V RK
Sbjct:  211 YPDASPIMLLSETSMEALNSRLEQPVSLANFRPCIVASGCEAFAEDDWDDVRLGATRLKRVMACGRCVLTTVNPNSGVITRKEPLDTLRTFRQSDSSLKEVYKNAP--LFGQYY----GVEQTGIIRVGDPVYRVTRK 342          
BLAST of CN188247 vs. ExPASy Swiss-Prot
Match: MOSC2_MOUSE (MOSC domain-containing protein 2, mitochondrial OS=Mus musculus GN=Mosc2 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 7.826e-15
Identity = 50/136 (36.76%), Postives = 71/136 (52.21%), Query Frame = 3
Query:    6 FSDCYPFMLLSHGSLDALNKLLKEPIPINRFRPNILVDGCEPFSEDLWTGIRINNCTFQGVKLCDRCKVPTINQDTGVAG-PEPSETLRQIRSDKVLRPNQKQ--QGKIYFGQNLVWKDNLSNGKVLKLGDPVFVM 404
            + DC P  L+S  SL  LN  LK+ + +  FRPNI+V GCE F ED W  + I +   + V  C RC + T++ DTG+    EP ETL+  R   +  P+ K   Q    FG       ++     L++GDPV+ M
Sbjct:  208 YPDCSPVHLISEASLVDLNTRLKKKVKMEYFRPNIVVSGCEAFEEDTWDELLIGDVEMKRVLSCPRCVLTTVDPDTGIIDRKEPLETLKSYR---LCDPSVKSIYQSSPLFGMYF----SVEKLGSLRVGDPVYRM 336          
BLAST of CN188247 vs. ExPASy Swiss-Prot
Match: YCBX_ECOLI (Uncharacterized protein ycbX OS=Escherichia coli (strain K12) GN=ycbX PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.335e-14
Identity = 45/135 (33.33%), Postives = 72/135 (53.33%), Query Frame = 3
Query:    6 FSDCYPFMLLSHGSLDALNKLLKEPIPINRFRPNILVDGCEPFSEDLWTGIRINNCTFQGVKLCDRCKVPTINQDTGVAGP--EPSETLRQIRSDKVLRPNQKQQGKIYFGQNLVWKDNLSNGKVLKLGDPVFVM 404
            F+D YP++L +  SL  L +     + + +FRPN++V G   + ED W  IRI +  F  VK C RC   T++ + G   P  EP +TL+  R+        +  G + FGQNL+ +    N  V+++GD V ++
Sbjct:  141 FADGYPYLLANEASLRDLQQRCPASVKMEQFRPNLVVSGASAWEEDRWKVIRIGDVVFDVVKPCSRCIFTTVSPEKGQKHPAGEPLKTLQSFRT-------AQDNGDVDFGQNLIAR----NSGVIRVGDEVEIL 264          
BLAST of CN188247 vs. ExPASy Swiss-Prot
Match: MOSC2_RAT (MOSC domain-containing protein 2, mitochondrial OS=Rattus norvegicus GN=Mosc2 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.743e-14
Identity = 49/136 (36.03%), Postives = 71/136 (52.21%), Query Frame = 3
Query:    6 FSDCYPFMLLSHGSLDALNKLLKEPIPINRFRPNILVDGCEPFSEDLWTGIRINNCTFQGVKLCDRCKVPTINQDTGVAG-PEPSETLRQIRSDKVLRPNQKQ--QGKIYFGQNLVWKDNLSNGKVLKLGDPVFVM 404
            + DC P  L+S  SL  LN  L++ + +  FRPNI+V GCE F ED W  + I +   + V  C RC + T++ DTG+    EP ETL+  R   +  P+ K   Q    FG       ++     L++GDPV+ M
Sbjct:  208 YPDCSPIHLISEASLVDLNTRLQKKVKMEYFRPNIVVSGCEAFEEDTWDELLIGDVEMKRVLSCPRCVLTTVDPDTGIIDRKEPLETLKSYR---LCDPSVKSLYQSSPLFGMYF----SVEKIGSLRVGDPVYRM 336          
BLAST of CN188247 vs. ExPASy Swiss-Prot
Match: MOSC2_MACFA (MOSC domain-containing protein 2, mitochondrial OS=Macaca fascicularis GN=MOSC2 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.518e-13
Identity = 41/139 (29.50%), Postives = 74/139 (53.24%), Query Frame = 3
Query:    6 FSDCYPFMLLSHGSLDALNKLLKEPIPINRFRPNILVDGCEPFSEDLWTGIRINNCTFQGVKLCDRCKVPTINQDTGVAGPEPSETLRQIRSDKVLRPNQKQQGK------IYFGQNLVWKDNLSNGKVLKLGDPVFVM 404
            + DC P ++++  SL  LN  +++ + +  FRPNI+V GC+ F ED W  + I +   + +  C RC + T++ DTGV   +  E L  ++S ++  P++++  K      IY+    +          L++GDPV+ M
Sbjct:  206 YPDCSPLLIMTDASLVDLNTRIEKKMKMENFRPNIVVTGCDAFEEDTWDELLIGSVEVKKIMACPRCILTTVDPDTGVI--DRKEPLDTLKSYRLCDPSERELYKLSPLFGIYYSVEKIGS--------LRVGDPVYRM 334          
BLAST of CN188247 vs. ExPASy Swiss-Prot
Match: MOSC1_DANRE (MOSC domain-containing protein 1, mitochondrial OS=Danio rerio GN=mosc1 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.784e-12
Identity = 43/132 (32.58%), Postives = 66/132 (50.00%), Query Frame = 3
Query:    6 FSDCYPFMLLSHGSLDALNKLLKEPIPINRFRPNILVDGCEPFSEDLWTGIRINNCTFQGVKLCDRCKVPTINQDTGV-AGPEPSETLRQIRSDKVLRPNQKQQGKIYFGQNLVWKDNLSNGKVLKLGDPVF 398
            + D  P ML++  S+  LN  L + + + +FRP+I+V  CE F+ED W  IRI     + V  C RC   T++ +TGV +  EP ETL+  R     +      G+ Y          +    VL +G+PV+
Sbjct:  199 YPDAAPVMLMTEASVGDLNSRLDKDLSVFQFRPSIVVSDCEAFTEDTWDHIRIGEVELKRVIGCGRCLFTTVDPETGVFSRKEPLETLKTYRMTDPKQKTSPILGQYY---------TVRKTGVLHVGEPVY 321          
BLAST of CN188247 vs. ExPASy Swiss-Prot
Match: MOSC2_HUMAN (MOSC domain-containing protein 2, mitochondrial OS=Homo sapiens GN=MOSC2 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.099e-12
Identity = 40/139 (28.78%), Postives = 73/139 (52.52%), Query Frame = 3
Query:    6 FSDCYPFMLLSHGSLDALNKLLKEPIPINRFRPNILVDGCEPFSEDLWTGIRINNCTFQGVKLCDRCKVPTINQDTGVAGPEPSETLRQIRSDKVLRPNQKQQGK------IYFGQNLVWKDNLSNGKVLKLGDPVFVM 404
            + D  P ++++  SL  LN  +++ + +  FRPNI+V GC+ F ED W  + I +   + V  C RC + T++ DTGV   +  + L  ++S ++  P++++  K      IY+    +          L++GDPV+ M
Sbjct:  206 YPDYCPLLIMTDASLVDLNTRMEKKMKMENFRPNIVVTGCDAFEEDTWDELLIGSVEVKKVMACPRCILTTVDPDTGVI--DRKQPLDTLKSYRLCDPSERELYKLSPLFGIYYSVEKIGS--------LRVGDPVYRM 334          
The following BLAST results are available for this feature:
BLAST of CN188247 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
MOSC1_HUMAN4.902e-1737.78MOSC domain-containing protein 1, mitochondrial OS... [more]
MOSC2_BOVIN6.402e-1737.68MOSC domain-containing protein 2, mitochondrial OS... [more]
MOSC1_MOUSE1.863e-1636.03MOSC domain-containing protein 1, mitochondrial OS... [more]
MOSC1_XENLA3.177e-1637.68MOSC domain-containing protein 1, mitochondrial OS... [more]
MOSC2_MOUSE7.826e-1536.76MOSC domain-containing protein 2, mitochondrial OS... [more]
YCBX_ECOLI1.335e-1433.33Uncharacterized protein ycbX OS=Escherichia coli (... [more]
MOSC2_RAT1.743e-1436.03MOSC domain-containing protein 2, mitochondrial OS... [more]
MOSC2_MACFA2.518e-1329.50MOSC domain-containing protein 2, mitochondrial OS... [more]
MOSC1_DANRE2.784e-1232.58MOSC domain-containing protein 1, mitochondrial OS... [more]
MOSC2_HUMAN8.099e-1228.78MOSC domain-containing protein 2, mitochondrial OS... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005L18_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005L18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188247 ID=CN188247; Name=CN188247; organism=Citrus sinensis; type=EST; length=631bp
GAGGGTTTTCTGATTGTTATCCATTTATGCTGTTGTCTCACGGATCTTTG
GATGCACTTAATAAGCTTCTCAAGGAGCCTATTCCAATTAACCGTTTTCG
ACCAAACATCCTTGTTGATGGTTGTGAACCGTTTTCTGAGGACTTATGGA
CGGGCATCCGAATAAACAATTGCACATTTCAAGGTGTTAAGCTGTGTGAC
CGCTGTAAGGTGCCAACTATCAATCAAGACACTGGTGTTGCTGGTCCCGA
ACCAAGTGAAACACTAAGGCAAATTAGGTCAGATAAAGTTTTGCGTCCAA
ATCAAAAACAGCAGGGAAAGATATACTTTGGGCAGAACTTGGTGTGGAAG
GACAACCTTAGTAATGGAAAGGTGCTTAAACTTGGGGATCCAGTTTTTGT
CATGAGGAAGGTCGATTCTGCAGCTGAGGCAGCAGCTTGAGCTCTATTGA
ATATTTGTTAGTAATGCTAATGCTATTGTTGGGGCCAATAAATTAAACTC
TGTTGTGTGTGTATCATTGTCTAGTGGAATAAGAAACTGGTTTGTTGCTT
GCTATGCCACAGCAAGGTGCCATTTCCAGAGACATCGATATTGGTTATAA
ATTTTTTTTTTTCTTTTGTCAAACAAGCTGA
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