CX078565
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX078565 vs. ExPASy Swiss-Prot
Match: RL281_ARATH (60S ribosomal protein L28-1 OS=Arabidopsis thaliana GN=RPL28A PE=1 SV=1) HSP 1 Score: 213.001 bits (541), Expect = 1.265e-54 Identity = 105/143 (73.43%), Postives = 120/143 (83.92%), Query Frame = -3 Query: 228 MATVPGQLIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHSGLGNWKTVTIQPGGKDLFVVLATAKTKKQNKPASLLHKSTMRKEFPRMGKAVVNQVADKYYRPDLKKAALARLSAVNRSLKVSKFGVKKRNRQA 656 MATVPGQLIWEIVK NNCFLVKQFGRGN+ V+FSKE NNL N++S+KHSGL N KTVTIQ KD VVLAT KTKKQNKP ++KS ++KEFPRM KAV NQV D YYRPDLKKAALARLSA+++ L+V+K G K+RNRQA Sbjct: 1 MATVPGQLIWEIVKNNNCFLVKQFGRGNSKVQFSKETNNLTNVHSYKHSGLANKKTVTIQAADKDQAVVLATTKTKKQNKPKLSVNKSILKKEFPRMSKAVANQVVDNYYRPDLKKAALARLSAISKGLRVAKSGAKQRNRQA 143
BLAST of CX078565 vs. ExPASy Swiss-Prot
Match: RL282_ARATH (60S ribosomal protein L28-2 OS=Arabidopsis thaliana GN=RPL28C PE=2 SV=1) HSP 1 Score: 212.231 bits (539), Expect = 2.159e-54 Identity = 104/143 (72.73%), Postives = 119/143 (83.22%), Query Frame = -3 Query: 228 MATVPGQLIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHSGLGNWKTVTIQPGGKDLFVVLATAKTKKQNKPASLLHKSTMRKEFPRMGKAVVNQVADKYYRPDLKKAALARLSAVNRSLKVSKFGVKKRNRQA 656 MATVPGQLIWEIVK+NNCFLVKQFGRGNA V+FSKE NNL N+NS+KHSGL N KTVTIQ GKD VVL T KTK+QNKP ++KS ++KEF RM K V NQV D YYRPDLKKAALARLSA+++ L+V+K G K+RNRQA Sbjct: 1 MATVPGQLIWEIVKRNNCFLVKQFGRGNAKVQFSKESNNLVNINSYKHSGLANKKTVTIQAAGKDQGVVLGTTKTKRQNKPKLSVNKSILKKEFSRMSKVVANQVVDNYYRPDLKKAALARLSAISKGLRVAKSGPKRRNRQA 143
BLAST of CX078565 vs. ExPASy Swiss-Prot
Match: RL28_MOUSE (60S ribosomal protein L28 OS=Mus musculus GN=Rpl28 PE=1 SV=2) HSP 1 Score: 73.1738 bits (178), Expect = 1.565e-12 Identity = 46/138 (33.33%), Postives = 75/138 (54.35%), Query Frame = -3 Query: 222 LIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHSGLGNWKTVTIQPGGKDLFVVLATAKTKKQNKPASLLHKSTMRKEFPRMGKAVVNQVADKYYRPDLKKAALARLSAVNRSLKVSKFGVKKRNRQATK 635 L W +V+ + FL+K+ + +S EPNNL NSF+++GL + KTV ++P VV+ + Q KPA+ ++T+ K ++ + + YRPDL+ AA+ R SA+ RS K VK++ + TK Sbjct: 5 LQWMVVRNCSSFLIKRNKQ-----TYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKGVVVVMKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILRSQK--PVVVKRKRTRPTK 135
BLAST of CX078565 vs. ExPASy Swiss-Prot
Match: RL28_HUMAN (60S ribosomal protein L28 OS=Homo sapiens GN=RPL28 PE=1 SV=3) HSP 1 Score: 73.1738 bits (178), Expect = 1.565e-12 Identity = 46/138 (33.33%), Postives = 75/138 (54.35%), Query Frame = -3 Query: 222 LIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHSGLGNWKTVTIQPGGKDLFVVLATAKTKKQNKPASLLHKSTMRKEFPRMGKAVVNQVADKYYRPDLKKAALARLSAVNRSLKVSKFGVKKRNRQATK 635 L W +V+ + FL+K+ + +S EPNNL NSF+++GL + KTV ++P VV+ + Q KPA+ ++T+ K ++ + + YRPDL+ AA+ R SA+ RS K VK++ + TK Sbjct: 5 LQWMVVRNCSSFLIKRNKQ-----TYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKGVVVVIKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILRSQK--PVMVKRKRTRPTK 135
BLAST of CX078565 vs. ExPASy Swiss-Prot
Match: RL28_SPOFR (60S ribosomal protein L28 OS=Spodoptera frugiperda GN=RpL28 PE=2 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 2.044e-12 Identity = 52/132 (39.39%), Postives = 71/132 (53.79%), Query Frame = -3 Query: 258 LIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHSGLGNWKTVTI--QPGGKDLFVVLATAKTKKQNKPASLLHKSTMRKEFPRMGKAVVNQV----ADKYYRPDLKKAALARLSAVNRSLKVSK 635 L W I++ NN FLVK + N FSKEPNN+ NLNS++++GL K V + P K VV K K NKPA K+ +R++F + + +V +YR DL KA L R SA+ RS + K Sbjct: 5 LNWMIIRNNNAFLVK---KRNIKKPFSKEPNNVTNLNSYRYNGLIQKKAVGVVENPDRKGFTVVY--KKAKATNKPA----KNAVRRQFKAGARRSLYKVKRLLKANHYRTDLSKATLRRASAILRSQRPIK 127
BLAST of CX078565 vs. ExPASy Swiss-Prot
Match: RL28_BOVIN (60S ribosomal protein L28 OS=Bos taurus GN=RPL28 PE=2 SV=3) HSP 1 Score: 72.4034 bits (176), Expect = 2.669e-12 Identity = 46/138 (33.33%), Postives = 75/138 (54.35%), Query Frame = -3 Query: 222 LIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHSGLGNWKTVTIQPGGKDLFVVLATAKTKKQNKPASLLHKSTMRKEFPRMGKAVVNQVADKYYRPDLKKAALARLSAVNRSLKVSKFGVKKRNRQATK 635 L W +V+ + FL+K+ + +S EPNNL NSF+++GL + KTV ++P VV+ + Q KPA+ ++T+ K ++ + + YRPDL+ AA+ R SA+ RS K VK++ + TK Sbjct: 5 LQWMVVRNCSSFLIKRNKQ-----TYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKGVVVVMKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILRSQK--PVMVKRKPSRPTK 135
BLAST of CX078565 vs. ExPASy Swiss-Prot
Match: RL28E_SCHPO (Probable 60S ribosomal protein L28e OS=Schizosaccharomyces pombe GN=rpl28e PE=1 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.014e-11 Identity = 44/134 (32.84%), Postives = 69/134 (51.49%), Query Frame = -3 Query: 258 TVPGQLIWEIVKKNNCFLVK--QFGRGNASVEFSKEPNNLYNLNSFKHSGLGNWKTVTIQPGGKDLFVVLATAKTKKQNKPASLLHKSTMRKEFPRMG-KAVVNQVADKYYRPDLKKAALARLSAVNRSLKVSK 650 +V LIW++++ NN FLVK +FG ++F++EP N+ N+ + SGL N K V +Q V++ K KPA L K + R K++ ++ YR DL K ++AR SA+ S + K Sbjct: 2 SVSNDLIWQVIRDNNRFLVKRPEFG----GIQFNREPVNVSGKNAQRFSGLCNDKAVGVQANSPRGVVLITKTNPKNAQKPAKLFRKDVIANASSRKTYKSIAGRIGRTGYRDDLVKVSVARASAILSSQRPKK 131
BLAST of CX078565 vs. ExPASy Swiss-Prot
Match: RL28_RAT (60S ribosomal protein L28 OS=Rattus norvegicus GN=Rpl28 PE=1 SV=4) HSP 1 Score: 70.0922 bits (170), Expect = 1.325e-11 Identity = 48/140 (34.29%), Postives = 78/140 (55.71%), Query Frame = -3 Query: 222 LIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHSGLGNWKTVTIQ--PGGKDLFVVLATAKTKKQNKPASLLHKSTMRKEFPRMGKAVVNQVADKYYRPDLKKAALARLSAVNRSLKVSKFGVKKRNRQATK 635 L W +V+ + FL+K+ + +S EPNNL NSF+++GL + KTV ++ P GK + VV+ + Q KPA+ ++T+ K ++ + + YRPDL+ AA+ R SA+ RS K VK++ + TK Sbjct: 5 LQWMVVRNCSSFLIKRNKQ-----TYSTEPNNLKARNSFRYNGLIHRKTVGVEAWPDGKGVVVVMK--RRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILRSQK--PVVVKRKRTRPTK 135
BLAST of CX078565 vs. ExPASy Swiss-Prot
Match: RL28_DROME (60S ribosomal protein L28 OS=Drosophila melanogaster GN=RpL28 PE=1 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 1.730e-11 Identity = 54/151 (35.76%), Postives = 77/151 (50.99%), Query Frame = -3 Query: 216 MATVPGQLIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHSGLGNWKTVTIQPGGKDLFVVLATAKTKKQNKPASLLHKSTMRKEF---PRMG-KAVVNQVADKYYRPDLKKAALARLSAVNRSLKVSKFGVKKRNRQATKVP 656 MAT L W I++ NN FL+K + + FS EPNNL +++S+++SG+ + KT+ + P K K +PA K+T+R +F PR K + N + YR DL +AAL R SAV RS K + KK K P Sbjct: 1 MAT-SSHLNWLIIRNNNAFLLK---KRDVKKPFSTEPNNLASVSSYRYSGIVHKKTLGVVPAADKKGFTAVLKKGKYAQRPA----KNTVRVDFKAGPRRSLKKLKNLLIGSKYRKDLTQAALRRASAVLRSQKPAPVKGKKAEFAKGKKP 143 The following BLAST results are available for this feature:
BLAST of CX078565 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 9
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX078565 ID=CX078565; Name=CX078565; organism=Citrus sinensis; type=EST; length=709bpback to top |