CX078565

Overview
NameCX078565
Unique NameCX078565
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length709
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig646 contig Csv1_Contig646:155..863. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX078565 vs. ExPASy Swiss-Prot
Match: RL281_ARATH (60S ribosomal protein L28-1 OS=Arabidopsis thaliana GN=RPL28A PE=1 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.265e-54
Identity = 105/143 (73.43%), Postives = 120/143 (83.92%), Query Frame = -3
Query:  228 MATVPGQLIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHSGLGNWKTVTIQPGGKDLFVVLATAKTKKQNKPASLLHKSTMRKEFPRMGKAVVNQVADKYYRPDLKKAALARLSAVNRSLKVSKFGVKKRNRQA 656
            MATVPGQLIWEIVK NNCFLVKQFGRGN+ V+FSKE NNL N++S+KHSGL N KTVTIQ   KD  VVLAT KTKKQNKP   ++KS ++KEFPRM KAV NQV D YYRPDLKKAALARLSA+++ L+V+K G K+RNRQA
Sbjct:    1 MATVPGQLIWEIVKNNNCFLVKQFGRGNSKVQFSKETNNLTNVHSYKHSGLANKKTVTIQAADKDQAVVLATTKTKKQNKPKLSVNKSILKKEFPRMSKAVANQVVDNYYRPDLKKAALARLSAISKGLRVAKSGAKQRNRQA 143          
BLAST of CX078565 vs. ExPASy Swiss-Prot
Match: RL282_ARATH (60S ribosomal protein L28-2 OS=Arabidopsis thaliana GN=RPL28C PE=2 SV=1)

HSP 1 Score: 212.231 bits (539), Expect = 2.159e-54
Identity = 104/143 (72.73%), Postives = 119/143 (83.22%), Query Frame = -3
Query:  228 MATVPGQLIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHSGLGNWKTVTIQPGGKDLFVVLATAKTKKQNKPASLLHKSTMRKEFPRMGKAVVNQVADKYYRPDLKKAALARLSAVNRSLKVSKFGVKKRNRQA 656
            MATVPGQLIWEIVK+NNCFLVKQFGRGNA V+FSKE NNL N+NS+KHSGL N KTVTIQ  GKD  VVL T KTK+QNKP   ++KS ++KEF RM K V NQV D YYRPDLKKAALARLSA+++ L+V+K G K+RNRQA
Sbjct:    1 MATVPGQLIWEIVKRNNCFLVKQFGRGNAKVQFSKESNNLVNINSYKHSGLANKKTVTIQAAGKDQGVVLGTTKTKRQNKPKLSVNKSILKKEFSRMSKVVANQVVDNYYRPDLKKAALARLSAISKGLRVAKSGPKRRNRQA 143          
BLAST of CX078565 vs. ExPASy Swiss-Prot
Match: RL28_MOUSE (60S ribosomal protein L28 OS=Mus musculus GN=Rpl28 PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.565e-12
Identity = 46/138 (33.33%), Postives = 75/138 (54.35%), Query Frame = -3
Query:  222 LIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHSGLGNWKTVTIQPGGKDLFVVLATAKTKKQNKPASLLHKSTMRKEFPRMGKAVVNQVADKYYRPDLKKAALARLSAVNRSLKVSKFGVKKRNRQATK 635
            L W +V+  + FL+K+  +      +S EPNNL   NSF+++GL + KTV ++P      VV+   +   Q KPA+   ++T+ K       ++ + +    YRPDL+ AA+ R SA+ RS K     VK++  + TK
Sbjct:    5 LQWMVVRNCSSFLIKRNKQ-----TYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKGVVVVMKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILRSQK--PVVVKRKRTRPTK 135          
BLAST of CX078565 vs. ExPASy Swiss-Prot
Match: RL28_HUMAN (60S ribosomal protein L28 OS=Homo sapiens GN=RPL28 PE=1 SV=3)

HSP 1 Score: 73.1738 bits (178), Expect = 1.565e-12
Identity = 46/138 (33.33%), Postives = 75/138 (54.35%), Query Frame = -3
Query:  222 LIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHSGLGNWKTVTIQPGGKDLFVVLATAKTKKQNKPASLLHKSTMRKEFPRMGKAVVNQVADKYYRPDLKKAALARLSAVNRSLKVSKFGVKKRNRQATK 635
            L W +V+  + FL+K+  +      +S EPNNL   NSF+++GL + KTV ++P      VV+   +   Q KPA+   ++T+ K       ++ + +    YRPDL+ AA+ R SA+ RS K     VK++  + TK
Sbjct:    5 LQWMVVRNCSSFLIKRNKQ-----TYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKGVVVVIKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILRSQK--PVMVKRKRTRPTK 135          
BLAST of CX078565 vs. ExPASy Swiss-Prot
Match: RL28_SPOFR (60S ribosomal protein L28 OS=Spodoptera frugiperda GN=RpL28 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.044e-12
Identity = 52/132 (39.39%), Postives = 71/132 (53.79%), Query Frame = -3
Query:  258 LIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHSGLGNWKTVTI--QPGGKDLFVVLATAKTKKQNKPASLLHKSTMRKEFPRMGKAVVNQV----ADKYYRPDLKKAALARLSAVNRSLKVSK 635
            L W I++ NN FLVK   + N    FSKEPNN+ NLNS++++GL   K V +   P  K   VV    K K  NKPA    K+ +R++F    +  + +V       +YR DL KA L R SA+ RS +  K
Sbjct:    5 LNWMIIRNNNAFLVK---KRNIKKPFSKEPNNVTNLNSYRYNGLIQKKAVGVVENPDRKGFTVVY--KKAKATNKPA----KNAVRRQFKAGARRSLYKVKRLLKANHYRTDLSKATLRRASAILRSQRPIK 127          
BLAST of CX078565 vs. ExPASy Swiss-Prot
Match: RL28_BOVIN (60S ribosomal protein L28 OS=Bos taurus GN=RPL28 PE=2 SV=3)

HSP 1 Score: 72.4034 bits (176), Expect = 2.669e-12
Identity = 46/138 (33.33%), Postives = 75/138 (54.35%), Query Frame = -3
Query:  222 LIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHSGLGNWKTVTIQPGGKDLFVVLATAKTKKQNKPASLLHKSTMRKEFPRMGKAVVNQVADKYYRPDLKKAALARLSAVNRSLKVSKFGVKKRNRQATK 635
            L W +V+  + FL+K+  +      +S EPNNL   NSF+++GL + KTV ++P      VV+   +   Q KPA+   ++T+ K       ++ + +    YRPDL+ AA+ R SA+ RS K     VK++  + TK
Sbjct:    5 LQWMVVRNCSSFLIKRNKQ-----TYSTEPNNLKARNSFRYNGLIHRKTVGVEPAADGKGVVVVMKRRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILRSQK--PVMVKRKPSRPTK 135          
BLAST of CX078565 vs. ExPASy Swiss-Prot
Match: RL28E_SCHPO (Probable 60S ribosomal protein L28e OS=Schizosaccharomyces pombe GN=rpl28e PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.014e-11
Identity = 44/134 (32.84%), Postives = 69/134 (51.49%), Query Frame = -3
Query:  258 TVPGQLIWEIVKKNNCFLVK--QFGRGNASVEFSKEPNNLYNLNSFKHSGLGNWKTVTIQPGGKDLFVVLATAKTKKQNKPASLLHKSTMRKEFPRMG-KAVVNQVADKYYRPDLKKAALARLSAVNRSLKVSK 650
            +V   LIW++++ NN FLVK  +FG     ++F++EP N+   N+ + SGL N K V +Q       V++     K   KPA L  K  +     R   K++  ++    YR DL K ++AR SA+  S +  K
Sbjct:    2 SVSNDLIWQVIRDNNRFLVKRPEFG----GIQFNREPVNVSGKNAQRFSGLCNDKAVGVQANSPRGVVLITKTNPKNAQKPAKLFRKDVIANASSRKTYKSIAGRIGRTGYRDDLVKVSVARASAILSSQRPKK 131          
BLAST of CX078565 vs. ExPASy Swiss-Prot
Match: RL28_RAT (60S ribosomal protein L28 OS=Rattus norvegicus GN=Rpl28 PE=1 SV=4)

HSP 1 Score: 70.0922 bits (170), Expect = 1.325e-11
Identity = 48/140 (34.29%), Postives = 78/140 (55.71%), Query Frame = -3
Query:  222 LIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHSGLGNWKTVTIQ--PGGKDLFVVLATAKTKKQNKPASLLHKSTMRKEFPRMGKAVVNQVADKYYRPDLKKAALARLSAVNRSLKVSKFGVKKRNRQATK 635
            L W +V+  + FL+K+  +      +S EPNNL   NSF+++GL + KTV ++  P GK + VV+   +   Q KPA+   ++T+ K       ++ + +    YRPDL+ AA+ R SA+ RS K     VK++  + TK
Sbjct:    5 LQWMVVRNCSSFLIKRNKQ-----TYSTEPNNLKARNSFRYNGLIHRKTVGVEAWPDGKGVVVVMK--RRSGQRKPATSYVRTTINKNARATLSSIRHMIRKNKYRPDLRMAAIRRASAILRSQK--PVVVKRKRTRPTK 135          
BLAST of CX078565 vs. ExPASy Swiss-Prot
Match: RL28_DROME (60S ribosomal protein L28 OS=Drosophila melanogaster GN=RpL28 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.730e-11
Identity = 54/151 (35.76%), Postives = 77/151 (50.99%), Query Frame = -3
Query:  216 MATVPGQLIWEIVKKNNCFLVKQFGRGNASVEFSKEPNNLYNLNSFKHSGLGNWKTVTIQPGGKDLFVVLATAKTKKQNKPASLLHKSTMRKEF---PRMG-KAVVNQVADKYYRPDLKKAALARLSAVNRSLKVSKFGVKKRNRQATKVP 656
            MAT    L W I++ NN FL+K   + +    FS EPNNL +++S+++SG+ + KT+ + P            K K   +PA    K+T+R +F   PR   K + N +    YR DL +AAL R SAV RS K +    KK      K P
Sbjct:    1 MAT-SSHLNWLIIRNNNAFLLK---KRDVKKPFSTEPNNLASVSSYRYSGIVHKKTLGVVPAADKKGFTAVLKKGKYAQRPA----KNTVRVDFKAGPRRSLKKLKNLLIGSKYRKDLTQAALRRASAVLRSQKPAPVKGKKAEFAKGKKP 143          
The following BLAST results are available for this feature:
BLAST of CX078565 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
RL281_ARATH1.265e-5473.4360S ribosomal protein L28-1 OS=Arabidopsis thalian... [more]
RL282_ARATH2.159e-5472.7360S ribosomal protein L28-2 OS=Arabidopsis thalian... [more]
RL28_MOUSE1.565e-1233.3360S ribosomal protein L28 OS=Mus musculus GN=Rpl28... [more]
RL28_HUMAN1.565e-1233.3360S ribosomal protein L28 OS=Homo sapiens GN=RPL28... [more]
RL28_SPOFR2.044e-1239.3960S ribosomal protein L28 OS=Spodoptera frugiperda... [more]
RL28_BOVIN2.669e-1233.3360S ribosomal protein L28 OS=Bos taurus GN=RPL28 P... [more]
RL28E_SCHPO1.014e-1132.84Probable 60S ribosomal protein L28e OS=Schizosacch... [more]
RL28_RAT1.325e-1134.2960S ribosomal protein L28 OS=Rattus norvegicus GN=... [more]
RL28_DROME1.730e-1135.7660S ribosomal protein L28 OS=Drosophila melanogast... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_9G10_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-9G10-M19-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX078565 ID=CX078565; Name=CX078565; organism=Citrus sinensis; type=EST; length=709bp
TTTTTTTTTTTTTTTTTCAACATAAAAACAAAATCAAGTTAAAATCTAAA
TTTTGACCCTTTTCCCAGTGGGGTGGAACGGGCGAATATCTCCAGTACAT
AAAAAATTAAACATAAATGAAAACTGTCTTCTTGATACTTATAAAAACTA
AAATAAAACCATTCCAAAAACAAAGCATAACATCACTCGATTCCTCCTAA
AGTTCACTTCCTAACGGGAACCTTCGTAGCCTGCCTGTTTCTCTTTTTGA
CACCAAATTTTGAAACCTTTAGGCTCCTGTTAACAGCACTAAGCCTTGCA
AGGGCTGCCTTCTTCAAGTCTGGCCTGTAGTATTTATCAGCAACCTGATT
GACAACAGCCTTACCCATTCTTGGGAACTCCTTCCTCATGGTGGATTTGT
GAAGCAAGCTGGCAGGCTTGTTCTGCTTCTTGGTCTTTGCAGTGGCCAAC
ACCACAAACAGGTCCTTGCCTCCAGGCTGAATGGTCACAGTCTTCCAATT
CCCCAAACCGGAGTGTTTGAAGGAGTTAAGGTTGTAAAGGTTGTTGGGTT
CCTTGCTGAACTCGACGCTGGCGTTGCCTCTGCCGAATTGTTTAACCAAA
AAGCAGTTGTTCTTCTTCACAATCTCCCAAATCAACTGTCCTGGAACCGT
CGCCATTTCTTTCTGCCTTTTTTTCACTCCGACTCACTTCGAATGCTAAA
AGCAACCCT
back to top