CN188238

Overview
NameCN188238
Unique NameCN188238
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length781
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2648 contig Csv1_Contig2648:1..781. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188238 vs. ExPASy Swiss-Prot
Match: RRAA2_ARATH (Regulator of ribonuclease-like protein 2 OS=Arabidopsis thaliana GN=At5g16450 PE=2 SV=1)

HSP 1 Score: 296.59 bits (758), Expect = 1.026e-79
Identity = 142/166 (85.54%), Postives = 156/166 (93.98%), Query Frame = -1
Query:  131 MALVTTAEVCDANPQLIVSGELRALQPIFQIYGRRQVFSGPIVTLKVFEDNVLIREFLEEKGNGRVLVVDGGGSLRCAILGGNPVVQAQNNGWAGIVVNGCIRDVDEINGCDIGVRALASHPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAELSV 628
            MA VTTAEVCDAN +LI SG+LRALQPIFQIYGRRQ+FSGP+VT+KVFEDN LIR+F+EEKGNGRVLVVDGGGS RCAILGGNPVVQAQNNGWAGIVVNGCIRDVDEINGCDIGVRALASHP+KA+KKG+GE+ VP+ I GTRI DGEWLYADTDGIL+S+ ELSV
Sbjct:    1 MAFVTTAEVCDANQELIRSGQLRALQPIFQIYGRRQIFSGPVVTVKVFEDNGLIRQFIEEKGNGRVLVVDGGGSQRCAILGGNPVVQAQNNGWAGIVVNGCIRDVDEINGCDIGVRALASHPIKASKKGLGEQRVPVNIAGTRICDGEWLYADTDGILVSQIELSV 166          
BLAST of CN188238 vs. ExPASy Swiss-Prot
Match: RRAA1_ARATH (Regulator of ribonuclease-like protein 1 OS=Arabidopsis thaliana GN=At3g02770 PE=2 SV=1)

HSP 1 Score: 293.893 bits (751), Expect = 6.648e-79
Identity = 140/166 (84.34%), Postives = 155/166 (93.37%), Query Frame = -1
Query:  131 MALVTTAEVCDANPQLIVSGELRALQPIFQIYGRRQVFSGPIVTLKVFEDNVLIREFLEEKGNGRVLVVDGGGSLRCAILGGNPVVQAQNNGWAGIVVNGCIRDVDEINGCDIGVRALASHPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAELSV 628
            MA VTTAEVCDAN ++I SG+LRALQP+FQIYGRRQ+FSGP+VT+KVFEDN LIR FLEEKGNGRVLVVDGGGSLRCAILGGNPVVQAQNNGWAGI+VNGCIRDVDEINGCDIGVRALASHP+KA+KKG+GE+ V + I GTRI DGEWLYADTDGIL+S+ ELSV
Sbjct:    1 MAFVTTAEVCDANQEMIRSGQLRALQPVFQIYGRRQIFSGPVVTVKVFEDNGLIRHFLEEKGNGRVLVVDGGGSLRCAILGGNPVVQAQNNGWAGIIVNGCIRDVDEINGCDIGVRALASHPIKASKKGLGEQRVSLNIAGTRICDGEWLYADTDGILVSQIELSV 166          
BLAST of CN188238 vs. ExPASy Swiss-Prot
Match: RRAA3_ARATH (Regulator of ribonuclease-like protein 3 OS=Arabidopsis thaliana GN=At5g56260 PE=2 SV=1)

HSP 1 Score: 249.98 bits (637), Expect = 1.101e-65
Identity = 119/166 (71.69%), Postives = 141/166 (84.94%), Query Frame = -1
Query:  131 MALVTTAEVCDANPQLIVSGELRALQPIFQIYGRRQVFSGPIVTLKVFEDNVLIREFLEEKGNGRVLVVDGGGSLRCAILGGNPVVQAQNNGWAGIVVNGCIRDVDEINGCDIGVRALASHPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAELSV 628
            MA   TAE CD+N +LI +G+LRAL PIF+IYG+R+ FSGPIVTLKVFEDNVL+R  LE KG G VLV+DGGGS+RCA++GGN    AQNNGW+GIVVNGC+RDVDEIN CD+GVRAL S+P+K+ KKG GEK+VP+ IGGT I DGEWLYAD+DGILIS+ ELSV
Sbjct:    1 MAAFATAEACDSNAELISNGDLRALHPIFKIYGQRRCFSGPIVTLKVFEDNVLVRNQLETKGEGGVLVIDGGGSMRCALVGGNLGQLAQNNGWSGIVVNGCVRDVDEINDCDVGVRALGSNPLKSTKKGHGEKNVPVHIGGTLIRDGEWLYADSDGILISKTELSV 166          
BLAST of CN188238 vs. ExPASy Swiss-Prot
Match: RRAA_RALEJ (Regulator of ribonuclease activity A OS=Ralstonia eutropha (strain JMP134) GN=rraA PE=3 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 4.965e-50
Identity = 85/159 (53.46%), Postives = 117/159 (73.58%), Query Frame = -1
Query:  137 TAEVCDANPQLIVSGELRALQPIFQIYGRRQVFSGPIVTLKVFEDNVLIREFLEEKGNGRVLVVDGGGSLRCAILGGNPVVQAQNNGWAGIVVNGCIRDVDEINGCDIGVRALASHPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAEL 613
            T ++CDAN   +  G LR + P+F+ +G++Q F+GP  TLK+FEDN L+RE LE  G GRVLVVDGGGSLRCA++GGN  + A+ NGW GI+VNGC+RD  E++ CDIG+RALA+HP K+ K+G GE+ V + + G  +  G W+Y D DG+L+S  +L
Sbjct:    5 TTDLCDANEPRLADGTLRVMAPVFRAFGKQQAFAGPAATLKIFEDNSLVREALESPGQGRVLVVDGGGSLRCALVGGNLGLLAEKNGWVGIIVNGCVRDTGELDVCDIGIRALAAHPQKSQKRGAGERDVAVQMPGAVVRPGNWIYVDADGVLVSEEKL 163          
BLAST of CN188238 vs. ExPASy Swiss-Prot
Match: RRAA_BURM1 (Regulator of ribonuclease activity A OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN=rraA PE=3 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 1.106e-49
Identity = 90/160 (56.25%), Postives = 118/160 (73.75%), Query Frame = -1
Query:  134 TAEVCDANPQLIVSGELRALQPIFQIYGRRQVFSGPIVTLKVFEDNVLIREFLEEKGNGRVLVVDGGGSLRCAILGGNPVVQAQNNGWAGIVVNGCIRDVDEINGCDIGVRALASHPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAELS 613
            T ++CDA+   + +G LR LQP  + YG    F+GP  TLKVFEDN L+R  LE+ G GRVLVVDGG SLRCA++GGN    A+ NGWAGIVV+GC+RD  E+  C +GV ALA+HP K++K+G GE+ VP+T+ GTRI+ GEW+YAD DG+L+S   L+
Sbjct:    5 TTDLCDAHEDKLAAGTLRVLQPALRPYGGAARFAGPAATLKVFEDNTLVRAALEQDGGGRVLVVDGGASLRCALVGGNLGALAEKNGWAGIVVHGCVRDAAELRECKVGVLALATHPRKSDKRGAGERDVPVTVLGTRIAPGEWIYADDDGVLVSATSLT 164          
BLAST of CN188238 vs. ExPASy Swiss-Prot
Match: RRAA_BURTA (Regulator of ribonuclease activity A OS=Burkholderia thailandensis (strain E264 / ATCC 700388 / DSM 13276 / CIP 106301) GN=rraA PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 2.724e-48
Identity = 88/162 (54.32%), Postives = 119/162 (73.46%), Query Frame = -1
Query:  137 LVTTAEVCDANPQLIVSGELRALQPIFQIYGRRQVFSGPIVTLKVFEDNVLIREFLEEKGNGRVLVVDGGGSLRCAILGGNPVVQAQNNGWAGIVVNGCIRDVDEINGCDIGVRALASHPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILISRAEL 622
            +  T ++CDAN + + +G LR ++P+F+ +G  + F+GP  TLK+FEDN L+R  LE+ G GRVLVVDGGGSLRCA++GGN    A+ NGW GIVVNGC+RD  E+  C  GV ALA+HP K++K+G G   VP+ + GTRI+ G+W+YAD DGIL+S A L
Sbjct:    2 MFATTDLCDANEERLAAGTLRVIEPVFRSFGGVRRFAGPAATLKLFEDNTLVRAALEQDGAGRVLVVDGGGSLRCALVGGNLGKLAEKNGWVGIVVNGCVRDSAELAECRAGVLALAAHPRKSDKRGAGVSDVPVDVRGTRIAPGDWIYADADGILVSDAAL 163          
BLAST of CN188238 vs. ExPASy Swiss-Prot
Match: RRAA_BURPS (Regulator of ribonuclease activity A OS=Burkholderia pseudomallei GN=rraA PE=3 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 1.035e-47
Identity = 86/158 (54.43%), Postives = 117/158 (74.05%), Query Frame = -1
Query:  149 LVTTAEVCDANPQLIVSGELRALQPIFQIYGRRQVFSGPIVTLKVFEDNVLIREFLEEKGNGRVLVVDGGGSLRCAILGGNPVVQAQNNGWAGIVVNGCIRDVDEINGCDIGVRALASHPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILIS 622
            +  T ++CDA+   + +G LR L+P+F+ +G  + F+GP  TLK+FEDN L+R  LE+ G GRVLVVDGGGSLRCA++GGN    A+ NGWAGIVVNGC+RD DE+  C +GV ALA+HP K++K+G G    P+ + GTRI  G+W+YAD DG+L+S
Sbjct:    2 MFATTDLCDAHEDRLAAGTLRVLEPVFRPFGGVRRFAGPAATLKLFEDNSLVRTALEQDGAGRVLVVDGGGSLRCALVGGNLGKLAEKNGWAGIVVNGCVRDSDELAECRVGVLALAAHPRKSDKRGAGVSDAPVDVRGTRIVPGDWIYADADGVLVS 159          
BLAST of CN188238 vs. ExPASy Swiss-Prot
Match: RRAA_BURP6 (Regulator of ribonuclease activity A OS=Burkholderia pseudomallei (strain 668) GN=rraA PE=3 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 1.035e-47
Identity = 86/158 (54.43%), Postives = 117/158 (74.05%), Query Frame = -1
Query:  149 LVTTAEVCDANPQLIVSGELRALQPIFQIYGRRQVFSGPIVTLKVFEDNVLIREFLEEKGNGRVLVVDGGGSLRCAILGGNPVVQAQNNGWAGIVVNGCIRDVDEINGCDIGVRALASHPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILIS 622
            +  T ++CDA+   + +G LR L+P+F+ +G  + F+GP  TLK+FEDN L+R  LE+ G GRVLVVDGGGSLRCA++GGN    A+ NGWAGIVVNGC+RD DE+  C +GV ALA+HP K++K+G G    P+ + GTRI  G+W+YAD DG+L+S
Sbjct:    2 MFATTDLCDAHEDRLAAGTLRVLEPVFRPFGGVRRFAGPAATLKLFEDNSLVRTALEQDGAGRVLVVDGGGSLRCALVGGNLGKLAEKNGWAGIVVNGCVRDSDELAECRVGVLALAAHPRKSDKRGAGVSDAPVDVRGTRIVPGDWIYADADGVLVS 159          
BLAST of CN188238 vs. ExPASy Swiss-Prot
Match: RRAA_BURP1 (Regulator of ribonuclease activity A OS=Burkholderia pseudomallei (strain 1710b) GN=rraA PE=3 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 1.035e-47
Identity = 86/158 (54.43%), Postives = 117/158 (74.05%), Query Frame = -1
Query:  149 LVTTAEVCDANPQLIVSGELRALQPIFQIYGRRQVFSGPIVTLKVFEDNVLIREFLEEKGNGRVLVVDGGGSLRCAILGGNPVVQAQNNGWAGIVVNGCIRDVDEINGCDIGVRALASHPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILIS 622
            +  T ++CDA+   + +G LR L+P+F+ +G  + F+GP  TLK+FEDN L+R  LE+ G GRVLVVDGGGSLRCA++GGN    A+ NGWAGIVVNGC+RD DE+  C +GV ALA+HP K++K+G G    P+ + GTRI  G+W+YAD DG+L+S
Sbjct:    2 MFATTDLCDAHEDRLAAGTLRVLEPVFRPFGGVRRFAGPAATLKLFEDNSLVRTALEQDGAGRVLVVDGGGSLRCALVGGNLGKLAEKNGWAGIVVNGCVRDSDELAECRVGVLALAAHPRKSDKRGAGVSDAPVDVRGTRIVPGDWIYADADGVLVS 159          
BLAST of CN188238 vs. ExPASy Swiss-Prot
Match: RRAA_BURP0 (Regulator of ribonuclease activity A OS=Burkholderia pseudomallei (strain 1106a) GN=rraA PE=3 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 1.035e-47
Identity = 86/158 (54.43%), Postives = 117/158 (74.05%), Query Frame = -1
Query:  149 LVTTAEVCDANPQLIVSGELRALQPIFQIYGRRQVFSGPIVTLKVFEDNVLIREFLEEKGNGRVLVVDGGGSLRCAILGGNPVVQAQNNGWAGIVVNGCIRDVDEINGCDIGVRALASHPMKANKKGIGEKHVPITIGGTRISDGEWLYADTDGILIS 622
            +  T ++CDA+   + +G LR L+P+F+ +G  + F+GP  TLK+FEDN L+R  LE+ G GRVLVVDGGGSLRCA++GGN    A+ NGWAGIVVNGC+RD DE+  C +GV ALA+HP K++K+G G    P+ + GTRI  G+W+YAD DG+L+S
Sbjct:    2 MFATTDLCDAHEDRLAAGTLRVLEPVFRPFGGVRRFAGPAATLKLFEDNSLVRTALEQDGAGRVLVVDGGGSLRCALVGGNLGKLAEKNGWAGIVVNGCVRDSDELAECRVGVLALAAHPRKSDKRGAGVSDAPVDVRGTRIVPGDWIYADADGVLVS 159          
The following BLAST results are available for this feature:
BLAST of CN188238 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 185
Match NameE-valueIdentityDescription
RRAA2_ARATH1.026e-7985.54Regulator of ribonuclease-like protein 2 OS=Arabid... [more]
RRAA1_ARATH6.648e-7984.34Regulator of ribonuclease-like protein 1 OS=Arabid... [more]
RRAA3_ARATH1.101e-6571.69Regulator of ribonuclease-like protein 3 OS=Arabid... [more]
RRAA_RALEJ4.965e-5053.46Regulator of ribonuclease activity A OS=Ralstonia ... [more]
RRAA_BURM11.106e-4956.25Regulator of ribonuclease activity A OS=Burkholder... [more]
RRAA_BURTA2.724e-4854.32Regulator of ribonuclease activity A OS=Burkholder... [more]
RRAA_BURPS1.035e-4754.43Regulator of ribonuclease activity A OS=Burkholder... [more]
RRAA_BURP61.035e-4754.43Regulator of ribonuclease activity A OS=Burkholder... [more]
RRAA_BURP11.035e-4754.43Regulator of ribonuclease activity A OS=Burkholder... [more]
RRAA_BURP01.035e-4754.43Regulator of ribonuclease activity A OS=Burkholder... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005L13_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005L13, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188238 ID=CN188238; Name=CN188238; organism=Citrus sinensis; type=EST; length=781bp
TTTTTTTTTTTTTTTTCAGTTCATCTAAAATTAATAAATGGGCTCGTTAA
AACAAGTTAGGCATAATAGTAGGGGAATACATTCCCGGAAAAGCACCTGC
AGTTTTGGTATTTGCAAAGGAAAGGACTCATACAGATAACTCTGCCCGAG
AAATCAAGATGCCATCTGTGTCAGCATAAAGCCATTCGCCATCACTGATT
CTTGTCCCACCAATAGTTATTGGCACATGTTTCTCCCCAATCCCCTTCTT
ATTGGCTTTCATGGGATGAGAAGCCAGTGCTCTCACACCAATATCACACC
CATTAATTTCATCAACATCCCTAATACACCCATTCACAACTATTCCAGCC
CATCCGTTATTCTGGGCTTGTACGACAGGGTTACCCCCCAATATAGCGCA
CCGCAAACTCCCACCCCCATCTACAACAAGAACTCTTCCATTACCCTTCT
CCTCAAGAAACTCACGAATCAAAACATTGTCTTCAAATACCTTGAGGGTG
ACTATTGGTCCAGAGAATACTTGGCGCCGACCATATATCTGAAAAATTGG
CTGGAGAGCACGTAGCTCGCCACTCACAATCAGCTGTGGGTTTGCATCAC
ATACTTCAGCAGTCGTAACTAATGCCATTTATTCTAAGCACCTCAAACAA
AGCTTACTGAGATTTGAGACAAAAGAATTAAAATTGAATAATAGTTTAAT
TTACAATATTCACTTTTAATCAATGAGGAATACAACAACAATCAGTTATT
TACAAAATTAAATAATACAATGGAATCAACC
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