CN188236

Overview
NameCN188236
Unique NameCN188236
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length649
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN188236_ssr206 microsatellite CN188236_ssr206:206..220. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6506 contig Csv1_Contig6506:32..680. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188236 vs. ExPASy Swiss-Prot
Match: BI1_ARATH (Bax inhibitor 1 OS=Arabidopsis thaliana GN=BI-1 PE=1 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.357e-49
Identity = 101/150 (67.33%), Postives = 118/150 (78.67%), Query Frame = -3
Query:  198 LFKGASIGPLIDLAIQIDPSILISAFVGTGLAFACFSVAAMVARRREYXXXXXXXXXXXXXXXXLHFASSIFGGSTAIFKFELYFGLLVFVGYIVVDTQDIIEKAHFGDLDYVKHSLTLFTDFVAVFVRILIIMLKHASXXXXXXXKRRD 647
            + +GAS+GPLI +AI +DPSILI+AFVGT +AF CFS AAM+ARRREY                L FASSIFGGS +IFKFELYFGLL+FVGY+VVDTQ+IIEKAH GD+DYVKHSLTLFTDFVAVFVRILIIMLK+++       KRR+
Sbjct:   98 VLEGASVGPLIKVAIDVDPSILITAFVGTAIAFVCFSAAAMLARRREYLYLGGLLSSGLSMLMWLQFASSIFGGSASIFKFELYFGLLIFVGYMVVDTQEIIEKAHLGDMDYVKHSLTLFTDFVAVFVRILIIMLKNSADKEEKKKKRRN 247          
BLAST of CN188236 vs. ExPASy Swiss-Prot
Match: BI1_ORYSJ (Bax inhibitor 1 OS=Oryza sativa subsp. japonica GN=BI1 PE=2 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 5.523e-43
Identity = 86/139 (61.87%), Postives = 107/139 (76.98%), Query Frame = -3
Query:  231 LFKGASIGPLIDLAIQIDPSILISAFVGTGLAFACFSVAAMVARRREYXXXXXXXXXXXXXXXXLHFASSIFGGSTAIFKFELYFGLLVFVGYIVVDTQDIIEKAHFGDLDYVKHSLTLFTDFVAVFVRILIIMLKHAS 647
            L +GAS+GPLI LA+  D SIL++AFVGT +AF CF+ AA+VA+RREY                L FA+SIFG ST  F FE+YFGLL+F+GY+V DTQ+IIE+AH GD+DY+KH+LTLFTDFVAV VRIL+IMLK+AS
Sbjct:   99 LLEGASVGPLIKLAVDFDSSILVTAFVGTAIAFGCFTCAAIVAKRREYLYLGGLLSSGLSILLWLQFAASIFGHSTGSFMFEVYFGLLIFLGYMVYDTQEIIERAHHGDMDYIKHALTLFTDFVAVLVRILVIMLKNAS 237          
BLAST of CN188236 vs. ExPASy Swiss-Prot
Match: BI1_RAT (Bax inhibitor 1 OS=Rattus norvegicus GN=Tmbim6 PE=2 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 2.850e-23
Identity = 55/131 (41.98%), Postives = 80/131 (61.07%), Query Frame = -3
Query:  246 GASIGPLIDLAIQIDPSILISAFVGTGLAFACFSVAAMVARRREYXXXXXXXXXXXXXXXXLHFASSIFGGSTAIFKFELYFGLLVFVGYIVVDTQDIIEKAHFGDLDYVKHSLTLFTDFVAVFVRILIIM 638
            G  +GP ++L I I+PSIL +AF+GT + F CFS++A+ ARRR Y                    + +F GS  +F+  LY GLLV  G+++ DTQ IIEKA  GD DY+ H + LF DFV +F ++++I+
Sbjct:   96 GVGLGPALELCIAINPSILPTAFMGTAMIFTCFSLSALYARRRSYLFLGGILMSAMSLMFVSSLGN-LFFGSIWLFQANLYMGLLVMCGFVLFDTQLIIEKAEHGDKDYIWHCIDLFLDFVTLFRKLMLIL 225          
BLAST of CN188236 vs. ExPASy Swiss-Prot
Match: BI1_MOUSE (Bax inhibitor 1 OS=Mus musculus GN=Tmbim6 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 4.861e-23
Identity = 54/131 (41.22%), Postives = 80/131 (61.07%), Query Frame = -3
Query:  246 GASIGPLIDLAIQIDPSILISAFVGTGLAFACFSVAAMVARRREYXXXXXXXXXXXXXXXXLHFASSIFGGSTAIFKFELYFGLLVFVGYIVVDTQDIIEKAHFGDLDYVKHSLTLFTDFVAVFVRILIIM 638
            G  +GP ++L I ++PSIL +AF+GT + F CFS++A+ ARRR Y                    + +F GS  +F+  LY GLLV  G+++ DTQ IIEKA  GD DY+ H + LF DFV +F ++++I+
Sbjct:   96 GVGLGPALELCIAVNPSILPTAFMGTAMIFTCFSLSALYARRRSYLFLGGILMSAMSLMLLSSLGN-LFFGSIWLFQANLYLGLLVMCGFVLFDTQLIIEKAEHGDKDYIWHCVDLFLDFVTLFRKLMLIL 225          
BLAST of CN188236 vs. ExPASy Swiss-Prot
Match: BI1_PAROL (Probable Bax inhibitor 1 OS=Paralichthys olivaceus GN=tmbim6 PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 8.291e-23
Identity = 51/131 (38.93%), Postives = 80/131 (61.07%), Query Frame = -3
Query:  246 GASIGPLIDLAIQIDPSILISAFVGTGLAFACFSVAAMVARRREYXXXXXXXXXXXXXXXXLHFASSIFGGSTAIFKFELYFGLLVFVGYIVVDTQDIIEKAHFGDLDYVKHSLTLFTDFVAVFVRILIIM 638
            G  + P +D  I I+PSI+++AF+GT + F CF+++A+ A+RR Y                +   +  FG S  +FK  +Y GLL+  G+++ DTQ IIEKA  GD DYV HS+ LF DF+ +F ++++I+
Sbjct:   96 GVGLCPTLDFVIAINPSIIVTAFLGTSVIFVCFTLSALYAKRRSYLFLGGTLMSGLSILFLMSMMNMFFG-SVMLFKAHMYLGLLIMCGFVLXDTQLIIEKAENGDKDYVWHSVDLFLDFITIFRKLMVIL 225          
BLAST of CN188236 vs. ExPASy Swiss-Prot
Match: BI1_PIG (Bax inhibitor 1 OS=Sus scrofa GN=TMBIM6 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.083e-22
Identity = 54/131 (41.22%), Postives = 81/131 (61.83%), Query Frame = -3
Query:  246 GASIGPLIDLAIQIDPSILISAFVGTGLAFACFSVAAMVARRREYXXXXXXXXXXXXXXXXLHFASSIFGGSTAIFKFELYFGLLVFVGYIVVDTQDIIEKAHFGDLDYVKHSLTLFTDFVAVFVRILIIM 638
            G  +GP +DL I I+PSIL +AF+GT + F CF+++A+ ARRR Y                    + +F GS  +F+  LY GL+V  G+++ DTQ IIEKA  GD DY+ H + LF+DFV +F ++++I+
Sbjct:   96 GVGLGPALDLCIAINPSILPTAFMGTAMIFTCFTLSALYARRRSYLFLGGILMSAMSLMVLSSLGN-LFFGSIWLFQANLYVGLVVMCGFVLFDTQLIIEKAENGDKDYIWHCVDLFSDFVTLFRKLMMIL 225          
BLAST of CN188236 vs. ExPASy Swiss-Prot
Match: BI1_BOVIN (Bax inhibitor 1 OS=Bos taurus GN=TMBIM6 PE=2 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.083e-22
Identity = 54/131 (41.22%), Postives = 80/131 (61.07%), Query Frame = -3
Query:  246 GASIGPLIDLAIQIDPSILISAFVGTGLAFACFSVAAMVARRREYXXXXXXXXXXXXXXXXLHFASSIFGGSTAIFKFELYFGLLVFVGYIVVDTQDIIEKAHFGDLDYVKHSLTLFTDFVAVFVRILIIM 638
            G  +GP +DL I I+PSIL +AF+GT + F CF+++A+ ARRR Y                    + +F GS  +F+  LY GL+V  G+++ DTQ IIEKA  GD DY+ H + LF DFV +F ++++I+
Sbjct:   96 GVGLGPALDLCIAINPSILPTAFMGTAMIFTCFTLSALYARRRSYLFLGGILMSAMSLMLLSSLGN-LFFGSVWLFQANLYMGLVVMCGFVLFDTQLIIEKAENGDKDYIWHCVDLFLDFVTLFRKLMMIL 225          
BLAST of CN188236 vs. ExPASy Swiss-Prot
Match: BI1_HUMAN (Bax inhibitor 1 OS=Homo sapiens GN=TMBIM6 PE=1 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 4.115e-22
Identity = 51/131 (38.93%), Postives = 79/131 (60.31%), Query Frame = -3
Query:  246 GASIGPLIDLAIQIDPSILISAFVGTGLAFACFSVAAMVARRREYXXXXXXXXXXXXXXXXLHFASSIFGGSTAIFKFELYFGLLVFVGYIVVDTQDIIEKAHFGDLDYVKHSLTLFTDFVAVFVRILIIM 638
            G  +GP ++  I ++PSIL +AF+GT + F CF+++A+ ARRR Y                    + +F GS  +F+  LY GL+V  G+++ DTQ IIEKA  GD DY+ H + LF DF+ VF ++++I+
Sbjct:   96 GVGLGPALEFCIAVNPSILPTAFMGTAMIFTCFTLSALYARRRSYLFLGGILMSALSLLLLSSLGN-VFFGSIWLFQANLYVGLVVMCGFVLFDTQLIIEKAEHGDQDYIWHCIDLFLDFITVFRKLMMIL 225          
BLAST of CN188236 vs. ExPASy Swiss-Prot
Match: BI1_PONAB (Bax inhibitor 1 OS=Pongo abelii GN=TMBIM6 PE=2 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 9.167e-22
Identity = 50/131 (38.17%), Postives = 79/131 (60.31%), Query Frame = -3
Query:  246 GASIGPLIDLAIQIDPSILISAFVGTGLAFACFSVAAMVARRREYXXXXXXXXXXXXXXXXLHFASSIFGGSTAIFKFELYFGLLVFVGYIVVDTQDIIEKAHFGDLDYVKHSLTLFTDFVAVFVRILIIM 638
            G  +GP ++  I ++PSIL +AF+GT + F CF+++A+ ARRR Y                    + +F GS  +F+  LY GL+V  G+++ DTQ IIEKA  GD DY+ H + LF DF+ +F ++++I+
Sbjct:   96 GVGLGPALEFCITVNPSILPTAFMGTAMIFTCFTLSALYARRRSYLFLGGILMSALSLLLLSSLGN-VFFGSIWLFQANLYVGLVVMCGFVLFDTQLIIEKAEHGDQDYIWHCIDLFLDFITLFRKLMMIL 225          
BLAST of CN188236 vs. ExPASy Swiss-Prot
Match: BI1_DROME (Probable Bax inhibitor 1 OS=Drosophila melanogaster GN=CG7188 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.124e-14
Identity = 44/131 (33.59%), Postives = 74/131 (56.49%), Query Frame = -3
Query:  246 GASIGPLIDLAIQIDPSILISAFVGTGLAFACFSVAAMVARRREYXXXXXXXXXXXXXXXXLHFASSIFGGSTAIFKFELYFGLLVFVGYIVVDTQDIIEKAHFGDLDYVKHSLTLFTDFVAVFVRILIIM 638
            G ++GPL+     I+P+I++SA  GT + F   S++A++A + +Y                L   + +F  S  +   +LY G+ V   +IV DTQ+I+EK   G+ D V+H+L LF D +++F R+LII+
Sbjct:   99 GQTLGPLLGYICSINPAIILSALTGTFVTFISLSLSALLAEQGKYLYLGGMLVSVINTMALLSLFNMVFK-SYFVQVTQLYVGVFVMAAFIVYDTQNIVEKCRNGNRDVVQHALDLFFDVLSMFRRLLIIL 228          
The following BLAST results are available for this feature:
BLAST of CN188236 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 10
Match NameE-valueIdentityDescription
BI1_ARATH1.357e-4967.33Bax inhibitor 1 OS=Arabidopsis thaliana GN=BI-1 PE... [more]
BI1_ORYSJ5.523e-4361.87Bax inhibitor 1 OS=Oryza sativa subsp. japonica GN... [more]
BI1_RAT2.850e-2341.98Bax inhibitor 1 OS=Rattus norvegicus GN=Tmbim6 PE=... [more]
BI1_MOUSE4.861e-2341.22Bax inhibitor 1 OS=Mus musculus GN=Tmbim6 PE=2 SV=... [more]
BI1_PAROL8.291e-2338.93Probable Bax inhibitor 1 OS=Paralichthys olivaceus... [more]
BI1_PIG1.083e-2241.22Bax inhibitor 1 OS=Sus scrofa GN=TMBIM6 PE=2 SV=1[more]
BI1_BOVIN1.083e-2241.22Bax inhibitor 1 OS=Bos taurus GN=TMBIM6 PE=2 SV=1[more]
BI1_HUMAN4.115e-2238.93Bax inhibitor 1 OS=Homo sapiens GN=TMBIM6 PE=1 SV=... [more]
BI1_PONAB9.167e-2238.17Bax inhibitor 1 OS=Pongo abelii GN=TMBIM6 PE=2 SV=... [more]
BI1_DROME4.124e-1433.59Probable Bax inhibitor 1 OS=Drosophila melanogaste... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0005L12_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005L12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188236 ID=CN188236; Name=CN188236; organism=Citrus sinensis; type=EST; length=649bp
TCAGCACCCACTGGCCATTGTCAAGCAGCAAAATATCAAAAATTAGCGAA
CACAACTAACCCCATGTATTACATCTGATTGTTAAGAGAGGTACAGCTTG
GAGAACACAAGTAAGCACAAGAATATACACAACAAATTTAGTTGTTCTGC
AACCCTTAGTTAAACAAGCACTGTCCGTCCAGCTACCGAGAGATTCAGTC
TCTCCTCTTCTTCTTCTTCTCCTCTTTCTCAGAGGCATGCTTCAACATGA
TTATGAGAATACGAACAAAGACAGCAACAAAGTCAGTGAAAAGAGTCAGG
GAATGCTTGACATAATCCAAGTCTCCAAAGTGAGCTTTCTCAATTATATC
CTGGGTATCCACCACGATGTAGCCAACAAACACCAACAGCCCAAAGTATA
ACTCAAACTTGAAGATAGCTGTTGAACCACCAAAGATAGAGGAAGCAAAA
TGCAACCAAAGAAGCATGGACAGGCCTGATGAAAGCAAGCCACCAAGATA
GAGATACTCTCTCCGCCTTGCAACCATGGCAGCTACAGAAAAACAAGCGA
AAGCCAGCCCAGTTCCCACAAATGCAGATATCAGAATGCTTGGGTCAATT
TGAATGGCGAGATCAATCAAAGGACCAATTGATGCACCTTTAAAGAGAG
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