EY666016

Overview
NameEY666016
Unique NameEY666016
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length855
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY666016 vs. ExPASy Swiss-Prot
Match: GSPE_PSEAE (General secretion pathway protein E OS=Pseudomonas aeruginosa GN=xcpR PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.518e-26
Identity = 63/145 (43.45%), Postives = 95/145 (65.52%), Query Frame = 2
Query:    2 LHTNDAPGAISRLQELGIPHYLINATLLGVMAQRLVRLLCPHCKRP-----------------NGQVYQAVGCGDCRESGYRGRAGIYEIMLMNDRLKALV-TPGTDLQVLRHAALDQGMCSLRSAGTRKVMAGLTTLEEVLRVT 382
            LHTN A GAI+RL ++GI  +L+++++LGV+AQRLVR+LCP CK P                    +++A GCG+C + GYRGR GIYE+++ +D +++L+    ++ ++ RHA       S+R  G RKV+ G+TT+EEVLRVT
Sbjct:  357 LHTNSAIGAITRLVDMGIEPFLLSSSMLGVLAQRLVRVLCPACKEPYRADEAECALLGVDPAAPPTLHRARGCGECHQHGYRGRTGIYELVVFDDHMRSLIHNESSEQEMTRHARTSGP--SIRDDGRRKVLEGVTTVEEVLRVT 499          
BLAST of EY666016 vs. ExPASy Swiss-Prot
Match: GSPE_KLEPN (General secretion pathway protein E OS=Klebsiella pneumoniae GN=pulE PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.739e-25
Identity = 61/142 (42.96%), Postives = 90/142 (63.38%), Query Frame = 2
Query:    2 LHTNDAPGAISRLQELGIPHYLINATLLGVMAQRLVRLLCPHCKR---------------PNGQVYQAVGCGDCRESGYRGRAGIYEIMLMNDRLKALVTPGTDLQVLRHAALDQGMCSLRSAGTRKVMAGLTTLEEVLRVT 382
            LHTN A GAISRLQ++G+  +L++ +LL VM+QRLVR LCPHC++               P   ++Q  GC +C  +GYRGR GI+E++L++DR++  +  G + +V     L     +LR AG  K +AG+T+ +EVLRVT
Sbjct:  349 LHTNSALGAISRLQDMGVEPFLLSTSLLAVMSQRLVRRLCPHCRQQEPANADTAHQMEIAPGTALWQPRGCAECGFTGYRGRTGIHELLLVDDRVRMAIHRGEN-EVTLIQQLGTDYMTLRRAGREKALAGITSWQEVLRVT 489          
BLAST of EY666016 vs. ExPASy Swiss-Prot
Match: GSPE1_ERWCH (General secretion pathway protein E OS=Erwinia chrysanthemi GN=outE PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.421e-24
Identity = 63/143 (44.06%), Postives = 90/143 (62.94%), Query Frame = 2
Query:    2 LHTNDAPGAISRLQELGIPHYLINATLLGVMAQRLVRLLCPHCKRP---------------NGQVYQAVGCGDCRESGYRGRAGIYEIMLMNDRLKALVTPG-TDLQVLRHAALDQGMCSLRSAGTRKVMAGLTTLEEVLRVT 382
            LHTN A GA+SRLQ++GI  +L++ +LLGV+AQRLVR LCP C++P                  +Y   GC  C  SGYRGR GI+E++L++D ++A +  G ++L + R   L     ++R  G  KV+AG+TT EEV+RVT
Sbjct:  355 LHTNSALGALSRLQDMGIEPFLLSTSLLGVLAQRLVRTLCPSCRQPYTIDHEQAEQTGLAAGTTLYHPGGCEKCNYSGYRGRTGIHELLLIDDTVRAAIHRGESELGIAR--MLGAKRVTIRQDGLDKVLAGITTWEEVVRVT 495          
BLAST of EY666016 vs. ExPASy Swiss-Prot
Match: GSPE_VIBCH (General secretion pathway protein E OS=Vibrio cholerae GN=epsE PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 1.203e-23
Identity = 61/144 (42.36%), Postives = 86/144 (59.72%), Query Frame = 2
Query:    2 LHTNDAPGAISRLQELGIPHYLINATLLGVMAQRLVRLLCPHCKRPNGQ-----------------VYQAVGCGDCRESGYRGRAGIYEIMLMNDRLKALVTPGTDLQVLRHAALDQGMCSLRSAGTRKVMAGLTTLEEVLRVT 382
            LHTN A GA++RL+++GI  +LI+++LLGV+AQRLVR LCP CK P                    +Y+A GC  C   GYRGR GI+E++L++D L+ L+      Q +    +     S+R  G  KV  G+T+LEEV+RVT
Sbjct:  358 LHTNTAVGAVTRLRDMGIEPFLISSSLLGVLAQRLVRTLCPDCKEPYEADKEQRKLFDSKKKEPLILYRATGCPKCNHKGYRGRTGIHELLLVDDALQELIHSEAGEQAM-EKHIRATTPSIRDDGLDKVRQGITSLEEVMRVT 500          
BLAST of EY666016 vs. ExPASy Swiss-Prot
Match: GSPE_PECCC (General secretion pathway protein E OS=Pectobacterium carotovorum subsp. carotovorum GN=outE PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.499e-23
Identity = 60/142 (42.25%), Postives = 87/142 (61.27%), Query Frame = 2
Query:    2 LHTNDAPGAISRLQELGIPHYLINATLLGVMAQRLVRLLCPHCKR---------------PNGQVYQAVGCGDCRESGYRGRAGIYEIMLMNDRLKALVTPGTDLQVLRHAALDQGMCSLRSAGTRKVMAGLTTLEEVLRVT 382
            LHTN A GA+SRLQ++G+  +L++ +LLGV+AQRLVR LC  C +               P   ++  VGC  C  +GYRGR GI+E++L+ND ++A +   +D ++     L     ++R  G  KV+AGLTT EEV+RVT
Sbjct:  355 LHTNSALGALSRLQDMGVEPFLLSTSLLGVLAQRLVRTLCSDCSQPQPVDPVQAEQMGIAPGTLLHNPVGCPQCSFTGYRGRIGIHELVLINDDVRAAI-HRSDGEMAIAQILGGSRTTIRQDGLNKVLAGLTTWEEVIRVT 495          
BLAST of EY666016 vs. ExPASy Swiss-Prot
Match: GSPE_AERHY (General secretion pathway protein E OS=Aeromonas hydrophila GN=exeE PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 6.600e-22
Identity = 57/147 (38.78%), Postives = 88/147 (59.86%), Query Frame = 2
Query:    2 LHTNDAPGAISRLQELGIPHYLINATLLGVMAQRLVRLLCPHCK-----------------RPNGQVYQAVGCGDCRESGYRGRAGIYEIMLMNDRLKALVTPGTDLQVLRHAALDQGMCSLRSAGTRKVMAGLTTLEEVLRVTPGD 391
            LHTN A GAI+R++++GI  +L++++LL V+AQRLVR LCP C+                  P+ QV++ VGC  C  +GYRGR GI+E++++++ ++  +   +    +     D    S+R  G  KV+ G T+LEEVLRVT  D
Sbjct:  356 LHTNTAIGAITRMRDMGIEPFLLSSSLLAVLAQRLVRTLCPDCRAPRPITEQERLAMGMELAPDQQVWRPVGCEQCNHTGYRGRTGIHELVVIDEAVREAIHSASGELAIERLIRDH-TPSIRRDGIDKVLKGQTSLEEVLRVTRED 501          
BLAST of EY666016 vs. ExPASy Swiss-Prot
Match: PILF_NEIGO (Type IV pilus assembly protein pilF OS=Neisseria gonorrhoeae GN=pilF PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.245e-20
Identity = 56/145 (38.62%), Postives = 87/145 (60.00%), Query Frame = 2
Query:    2 LHTNDAPGAISRLQELGIPHYLINATLLGVMAQRLVRLLCPHCK----RPNG-----------------QVYQAVGCGDCRESGYRGRAGIYEIMLMNDRL-KALVTPGTDLQVLRHAALDQGMCSLRSAGTRKVMAGLTTLEEV 370
            LHTN+AP  +SR+  +G+  + I +++  +MAQRL+R LC  CK    RP+                  ++Y AVGC  CR  GY+GRAG+YE+M +++ + + ++  GT++ +L   A  +GM  LR AG  K+M G+T+LEEV
Sbjct:  409 LHTNNAPATLSRMLNMGVAPFNIASSVSLIMAQRLLRRLCSSCKQEVERPSASALKEVGFTDEDLAKDWKLYGAVGCDRCRGQGYKGRAGVYEVMPISEEMQRVIMNNGTEVGIL-DVAYKEGMVDLRRAGILKIMQGITSLEEV 552          
BLAST of EY666016 vs. ExPASy Swiss-Prot
Match: TAPB_AERHY (Type IV pilus assembly protein tapB OS=Aeromonas hydrophila GN=tapB PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.773e-20
Identity = 54/147 (36.73%), Postives = 81/147 (55.10%), Query Frame = 2
Query:    2 LHTNDAPGAISRLQELGIPHYLINATLLGVMAQRLVRLLCPHCKRPNG--------------------QVYQAVGCGDCRESGYRGRAGIYEIMLMNDRLKALVTPGTDLQVLRHAALDQGMCSLRSAGTRKVMAGLTTLEEVLRVT 382
            LHTN A   ++R+  +G+P + I +++  +MAQRL R LC HCK P                      ++++ VGC DC   GY+GR GIYEIMLM++ +  L+  G +   +   A  +GM +LR +G  K   G+T+L E+ RVT
Sbjct:  421 LHTNSAAETLTRMMNMGVPAFNIASSVTLIMAQRLARKLCDHCKAPEVVPEAELLELGFTQQQLAAGLRLFKPVGCKDC-SGGYKGRVGIYEIMLMSENIAKLIMQGANSLQIAAIAQKEGMRTLRISGLEKARIGVTSLAEINRVT 566          
BLAST of EY666016 vs. ExPASy Swiss-Prot
Match: GSPE_ECOLI (Probable general secretion pathway protein E OS=Escherichia coli (strain K12) GN=gspE PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 6.177e-20
Identity = 52/150 (34.67%), Postives = 88/150 (58.67%), Query Frame = 2
Query:    2 LHTNDAPGAISRLQELGIPHYLINATLLGVMAQRLVRLLCPHCKR------PNGQVYQ-----------AVGCGDCRESGYRGRAGIYEIMLMNDRLKALVTPGTDLQVLRHAALDQGMCSLRSAGTRKVMAGLTTLEEVLRVTPGDSET 400
            LHTN A GA++RL+++G+  +L++++L G++AQRLVR LCP C++         Q+++            VGC  C +SGY+GR  I+E+M++   L+A +    D Q L      Q    +++ G +KV++G T+ +EV+RV     E+
Sbjct:  343 LHTNSASGAVTRLRDMGVESFLLSSSLAGIIAQRLVRRLCPQCRQFTPVSPQQAQMFKYHQLAVTTIGTPVGCPHCHQSGYQGRMAIHEMMVVTPELRAAIHENVDEQALERLVRQQHKALIKN-GLQKVISGDTSWDEVMRVASATLES 491          
BLAST of EY666016 vs. ExPASy Swiss-Prot
Match: HOFB_ECOLI (Protein transport protein hofB OS=Escherichia coli (strain K12) GN=hofB PE=3 SV=3)

HSP 1 Score: 90.5077 bits (223), Expect = 1.288e-17
Identity = 50/140 (35.71%), Postives = 78/140 (55.71%), Query Frame = 2
Query:    2 LHTNDAPGAISRLQELGIPHYLINATLLGVMAQRLVRLLCPHCKRPNGQV--------------YQAVGCGDCRESGYRGRAGIYEIMLMNDRLKALVTPGTDLQVLRHAALDQGMCSLRSAGTRKVMAGLTTLEEVLRV 379
            LHTN     + RLQ++G+  +++++ L  V+AQRLVR LCPHC+R  G+               +QA GC  C   G+ GR  ++E++ +   ++ L++  TD++ L   A   GM +L   G   V  GLTT EE++RV
Sbjct:  316 LHTNSTCETLVRLQQMGVARWMLSSALTLVIAQRLVRKLCPHCRRQQGEPIHIPDNVWPSPLPHWQAPGCVHCYH-GFYGRTALFEVLPITPVIRQLISANTDVESLETHARQAGMRTLFENGCLAVEQGLTTFEELIRV 454          
The following BLAST results are available for this feature:
BLAST of EY666016 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
GSPE_PSEAE1.518e-2643.45General secretion pathway protein E OS=Pseudomonas... [more]
GSPE_KLEPN3.739e-2542.96General secretion pathway protein E OS=Klebsiella ... [more]
GSPE1_ERWCH1.421e-2444.06General secretion pathway protein E OS=Erwinia chr... [more]
GSPE_VIBCH1.203e-2342.36General secretion pathway protein E OS=Vibrio chol... [more]
GSPE_PECCC3.499e-2342.25General secretion pathway protein E OS=Pectobacter... [more]
GSPE_AERHY6.600e-2238.78General secretion pathway protein E OS=Aeromonas h... [more]
PILF_NEIGO1.245e-2038.62Type IV pilus assembly protein pilF OS=Neisseria g... [more]
TAPB_AERHY2.773e-2036.73Type IV pilus assembly protein tapB OS=Aeromonas h... [more]
GSPE_ECOLI6.177e-2034.67Probable general secretion pathway protein E OS=Es... [more]
HOFB_ECOLI1.288e-1735.71Protein transport protein hofB OS=Escherichia coli... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-102-011-G09-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY666016 ID=EY666016; Name=EY666016; organism=Citrus sinensis; type=EST; length=855bp
ACTCCACACCAACGACGCACCCGGCGCCATCAGCCGCCTGCAGGAACTGG
GTATTCCCCATTACCTGATCAATGCGACGTTGCTGGGGGTGATGGCCCAG
CGCCTGGTGCGGCTGTTGTGCCCGCACTGCAAGCGACCCAACGGGCAGGT
CTATCAGGCAGTGGGTTGCGGGGACTGTAGGGAAAGTGGTTACCGAGGGC
GAGCCGGGATCTACGAGATCATGCTGATGAACGACCGCCTCAAGGCGCTG
GTCACCCCGGGCACCGACCTTCAGGTCCTGCGTCACGCGGCCCTTGACCA
AGGAATGTGCAGCTTGCGGTCTGCCGGTACGCGCAAGGTAATGGCAGGGC
TGACGACCCTGGAAGAAGTACTGCGAGTGACGCCTGGGGATTCAGAAACA
AATCCCTTTGATTGATGGGCCGGTAAACCGTCCTTATCCCTGACAACACC
GTTACAATCGGTTAAACCTCGCGTTACCGCCAACACCAGATAGGGAATCG
TTATGCAGATCGGAACCGTACTGCTTCTTTTCGTAGGCTTGGCCGTCGCC
ATCCTCTTCATGGGTTTCAAAGTGGTCCCCCAGGGTTACCAGTGGACGGT
CGAGCGCTTCGGCCGCTACACAACACCCTCAAGCCGGGCCTCAACATCAT
TATTCCGGTCATGGACCGCATCCGTCCCAAAATCAACGTGATGGAAAGCG
TGGTGCATTTCCACCCCAGAAAGTCTCACCGGCCAAATGCCCAGGTTGAA
AATCGACACCGAGTGCTTCTTCCCCGAGGTAATGCGCGCCAGTCGGCAAC
CGAGGGAAACAAGTTGAGCCTCCATCCGAGACCTGTGCATAACAACTCCT
GTACG
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