CN188209

Overview
NameCN188209
Unique NameCN188209
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length682
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2081 contig Csv1_Contig2081:23..704. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188209 vs. ExPASy Swiss-Prot
Match: LSM12_XENLA (Protein LSM12 homolog OS=Xenopus laevis GN=lsm12 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 9.159e-15
Identity = 51/167 (30.54%), Postives = 84/167 (50.30%), Query Frame = 2
Query:   56 VGGSGEEFAVGCLLSIKTTLGDEFDGQVMAFDRFTNMLVIQEGLKSGP--RRNIRLLNANYIKDFSFLGQADDPLDPKKCFLDLSRLQAREHLAVRQAEADAQRIGVGVTTEAQNIFDALSKTL-PVRWDKTVIXVMNEVRVSSPYLPESVSGGTAAANERVKKVLE 547
            + G GE FA+G  +S +T       G+V+AFD  + ML ++    SG     +I LLN +Y+ D   + +      P    L++++L +R  L   +  + A  I  GV+ + Q +F  + KT+   +W +  I VM+EV +S PY  E+  G    A   V K++E
Sbjct:    1 MAGPGEYFAIGAYVSCRTCQETRLQGEVVAFDYPSKMLALKCPSSSGKANHADILLLNLDYVSDVEVINERTQ-TPPPLASLNITKLASRARLEKEEKLSQAYAISAGVSLDGQQLFQTIHKTIKDCKWQEKNIVVMDEVVISPPYQVENCKGKEGRALTHVCKIVE 166          
BLAST of CN188209 vs. ExPASy Swiss-Prot
Match: LS12A_DANRE (Protein LSM12 homolog A OS=Danio rerio GN=lsm12a PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.665e-14
Identity = 50/178 (28.09%), Postives = 89/178 (50.00%), Query Frame = 2
Query:   62 GSGEEFAVGCLLSIKTTLGDEFDGQVMAFDRFTNMLVIQEGLKSGPRR--NIRLLNANYIKDFSFLGQADDPLDPKKCFLDLSRLQAREHLAVRQAEADAQRIGVGVTTEAQNIFDALSKTL-PVRWDKTVIXVMNEVRVSSPYLPESVSGGTAAANERVKKVLEFERKRLQARGSSQ 586
            G GE F+VG  +S  T LG    G+V+AFD  + ML ++    SG     ++ L+N  Y+ +   +    +   P    L++S+L  R         + A  I  GV+ E Q +F  + KT+   +W +  I VM++V +S PY  E+  G   +A   ++K++E   + ++++ + Q
Sbjct:    5 GPGEYFSVGSHVSCLTCLGQRLQGEVVAFDYPSKMLTLKCPSSSGKPNLSDVILINLAYVSEVDIINDRTE-TPPPLASLNISKLANRARTEKEDKLSQAYAISAGVSIEGQQLFQTIHKTIKDCKWQEKNIIVMDDVVISPPYQVENCKGKEGSALSHIRKIVEKHFRDVESQKTMQ 181          
BLAST of CN188209 vs. ExPASy Swiss-Prot
Match: LSM12_XENTR (Protein LSM12 homolog OS=Xenopus tropicalis GN=lsm12 PE=2 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 7.754e-14
Identity = 50/167 (29.94%), Postives = 82/167 (49.10%), Query Frame = 2
Query:   56 VGGSGEEFAVGCLLSIKTTLGDEFDGQVMAFDRFTNMLVIQEGLKSGP--RRNIRLLNANYIKDFSFLGQADDPLDPKKCFLDLSRLQAREHLAVRQAEADAQRIGVGVTTEAQNIFDALSKTL-PVRWDKTVIXVMNEVRVSSPYLPESVSGGTAAANERVKKVLE 547
            + G GE FA+G  +S +T       G+V+AFD  + ML ++    SG     +I LLN +Y+ D   + +      P    L++++L +R  L   +  + A  I  GV+ + Q +F  + KT+   +W +  I VM E  +S PY  E+  G    A   V K++E
Sbjct:    1 MAGPGEYFAIGAYVSCRTCQETRLQGEVVAFDYPSKMLALKCPSSSGKPNHADILLLNLDYVSDVEVINERTQ-TPPPLASLNITKLASRARLEKEEKLSQAYAISAGVSLDGQQLFQTIHKTIKDCKWQEKNIVVMEEAVISPPYQVENCKGKEGRALCHVCKIVE 166          
BLAST of CN188209 vs. ExPASy Swiss-Prot
Match: LSM12_PONAB (Protein LSM12 homolog OS=Pongo abelii GN=LSM12 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.947e-13
Identity = 47/163 (28.83%), Postives = 81/163 (49.69%), Query Frame = 2
Query:   68 GEEFAVGCLLSIKTTLGDEFDGQVMAFDRFTNMLVIQEGLKSGP--RRNIRLLNANYIKDFSFLGQADDPLDPKKCFLDLSRLQAREHLAVRQAEADAQRIGVGVTTEAQNIFDALSKTL-PVRWDKTVIXVMNEVRVSSPYLPESVSGGTAAANERVKKVLE 547
            GE F+VG  +S +T       G+V+AFD  + ML ++    SG     +I L+N  Y+ +   +    +   P    L++S+L ++      +  + A  I  GV+ E Q +F  + KT+   +W +  I VM EV ++ PY  E+  G   +A   V+K++E
Sbjct:    6 GEYFSVGSQVSCRTCQEQRLQGEVVAFDYQSKMLALKCPSSSGKPNHADILLINLQYVSEVEIINDRTE-TPPPLASLNVSKLASKARTEKEEKLSQAYAISAGVSLEGQQLFQTIHKTIKDCKWQEKNIVVMEEVVITPPYQVENCKGKEGSALSHVRKIVE 167          
BLAST of CN188209 vs. ExPASy Swiss-Prot
Match: LSM12_MOUSE (Protein LSM12 homolog OS=Mus musculus GN=Lsm12 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.947e-13
Identity = 47/163 (28.83%), Postives = 81/163 (49.69%), Query Frame = 2
Query:   68 GEEFAVGCLLSIKTTLGDEFDGQVMAFDRFTNMLVIQEGLKSGP--RRNIRLLNANYIKDFSFLGQADDPLDPKKCFLDLSRLQAREHLAVRQAEADAQRIGVGVTTEAQNIFDALSKTL-PVRWDKTVIXVMNEVRVSSPYLPESVSGGTAAANERVKKVLE 547
            GE F+VG  +S +T       G+V+AFD  + ML ++    SG     +I L+N  Y+ +   +    +   P    L++S+L ++      +  + A  I  GV+ E Q +F  + KT+   +W +  I VM EV ++ PY  E+  G   +A   V+K++E
Sbjct:    6 GEYFSVGSQVSCRTCQEQRLQGEVVAFDYQSKMLALKCPSSSGKPNHADILLINLQYVSEVEIINDRTE-TPPPLASLNVSKLASKARTEKEEKLSQAYAISAGVSLEGQQLFQTIHKTIKDCKWQEKNIVVMEEVVITPPYQVENCKGKEGSALSHVRKIVE 167          
BLAST of CN188209 vs. ExPASy Swiss-Prot
Match: LSM12_HUMAN (Protein LSM12 homolog OS=Homo sapiens GN=LSM12 PE=1 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 2.947e-13
Identity = 47/163 (28.83%), Postives = 81/163 (49.69%), Query Frame = 2
Query:   68 GEEFAVGCLLSIKTTLGDEFDGQVMAFDRFTNMLVIQEGLKSGP--RRNIRLLNANYIKDFSFLGQADDPLDPKKCFLDLSRLQAREHLAVRQAEADAQRIGVGVTTEAQNIFDALSKTL-PVRWDKTVIXVMNEVRVSSPYLPESVSGGTAAANERVKKVLE 547
            GE F+VG  +S +T       G+V+AFD  + ML ++    SG     +I L+N  Y+ +   +    +   P    L++S+L ++      +  + A  I  GV+ E Q +F  + KT+   +W +  I VM EV ++ PY  E+  G   +A   V+K++E
Sbjct:    6 GEYFSVGSQVSCRTCQEQRLQGEVVAFDYQSKMLALKCPSSSGKPNHADILLINLQYVSEVEIINDRTE-TPPPLASLNVSKLASKARTEKEEKLSQAYAISAGVSLEGQQLFQTIHKTIKDCKWQEKNIVVMEEVVITPPYQVENCKGKEGSALSHVRKIVE 167          
BLAST of CN188209 vs. ExPASy Swiss-Prot
Match: LSM12_BOVIN (Protein LSM12 homolog OS=Bos taurus GN=LSM12 PE=2 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 2.947e-13
Identity = 47/163 (28.83%), Postives = 81/163 (49.69%), Query Frame = 2
Query:   68 GEEFAVGCLLSIKTTLGDEFDGQVMAFDRFTNMLVIQEGLKSGP--RRNIRLLNANYIKDFSFLGQADDPLDPKKCFLDLSRLQAREHLAVRQAEADAQRIGVGVTTEAQNIFDALSKTL-PVRWDKTVIXVMNEVRVSSPYLPESVSGGTAAANERVKKVLE 547
            GE F+VG  +S +T       G+V+AFD  + ML ++    SG     +I L+N  Y+ +   +    +   P    L++S+L ++      +  + A  I  GV+ E Q +F  + KT+   +W +  I VM EV ++ PY  E+  G   +A   V+K++E
Sbjct:    6 GEYFSVGSQVSCRTCQEQRLQGEVVAFDYQSKMLALKCPSSSGKPNHADILLINLQYVSEVEIINDRTE-TPPPLASLNVSKLASKARTEKEEKLSQAYAISAGVSLEGQQLFQTIHKTIKDCKWQEKNIVVMEEVVITPPYQVENCKGKEGSALSHVRKIVE 167          
BLAST of CN188209 vs. ExPASy Swiss-Prot
Match: LS12B_DANRE (Protein LSM12 homolog B OS=Danio rerio GN=lsm12b PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 2.947e-13
Identity = 51/179 (28.49%), Postives = 91/179 (50.84%), Query Frame = 2
Query:   62 GSGEEFAVGCLLSIKTTLGDEFDGQVMAFDRFTNMLVIQEGLKSGPRR--NIRLLNANYIKDFSFL-GQADDPLDPKKCFLDLSRLQAREHLAVRQAEADAQRIGVGVTTEAQNIFDALSKTL-PVRWDKTVIXVMNEVRVSSPYLPESVSGGTAAANERVKKVLEFERKRLQARGSSQ 586
            G GE F+VG  +S  T LG    G+V+AFD  + ML ++    SG     ++ L+N  Y+ +   +  +A+ P  P    L+ ++L  R         + A  +  GV+ E Q +F  + KT+   +W +  I VM++V +S PY  ++  G   +A   V+K++E   + ++++ S Q
Sbjct:    5 GPGEYFSVGSHVSCLTCLGQRLQGEVVAFDYPSKMLTLKCAPSSGKPNLSDVMLVNLAYVSEVDIITDRAETP--PPLASLNFNKLVNRARAEKEDKLSLAYAVSAGVSVEGQQLFQTIHKTIKECKWQEKNIIVMDDVVISPPYQVDNCKGKEGSALSHVRKIVEKHFRDVESQISVQ 181          
BLAST of CN188209 vs. ExPASy Swiss-Prot
Match: LSM12_CHICK (Protein LSM12 homolog OS=Gallus gallus GN=LSM12 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.120e-12
Identity = 50/181 (27.62%), Postives = 88/181 (48.62%), Query Frame = 2
Query:   68 GEEFAVGCLLSIKTTLGDEFDGQVMAFDRFTNMLVIQEGLKSGP--RRNIRLLNANYIKDFSFLGQADDPLDPKKCFLDLSRLQAREHLAVRQAEADAQRIGVGVTTEAQNIFDALSKTL-PVRWDKTVIXVMNEVRVSSPYLPESVSGGTAAANERVKKVLE-----FERKRLQARGSSQ 586
            GE F+VG  +S +T       G+V+AFD  + ML ++    SG     +I L+N  Y+ +   +    +   P    L++S+L  +  +   +  + A  I  GV+ E Q +F  + KT+   +W +  I VM EV ++ PY  E+  G   +A   V+K++E      E +++  R  +Q
Sbjct:    5 GECFSVGSQVSCRTCQEQRLQGEVVAFDYPSKMLALKCPSSSGKPNHADILLVNLQYVSEVEIINDRTE-TPPPLASLNVSKLANKARMEKEEKLSQAYAISAGVSLEGQQLFQTIHKTIKDCKWQEKNIVVMEEVVIAPPYQVENCKGKEGSALGHVRKIVEKHFRDVESQKVMQRSQAQ 184          
The following BLAST results are available for this feature:
BLAST of CN188209 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
LSM12_XENLA9.159e-1530.54Protein LSM12 homolog OS=Xenopus laevis GN=lsm12 P... [more]
LS12A_DANRE2.665e-1428.09Protein LSM12 homolog A OS=Danio rerio GN=lsm12a P... [more]
LSM12_XENTR7.754e-1429.94Protein LSM12 homolog OS=Xenopus tropicalis GN=lsm... [more]
LSM12_PONAB2.947e-1328.83Protein LSM12 homolog OS=Pongo abelii GN=LSM12 PE=... [more]
LSM12_MOUSE2.947e-1328.83Protein LSM12 homolog OS=Mus musculus GN=Lsm12 PE=... [more]
LSM12_HUMAN2.947e-1328.83Protein LSM12 homolog OS=Homo sapiens GN=LSM12 PE=... [more]
LSM12_BOVIN2.947e-1328.83Protein LSM12 homolog OS=Bos taurus GN=LSM12 PE=2 ... [more]
LS12B_DANRE2.947e-1328.49Protein LSM12 homolog B OS=Danio rerio GN=lsm12b P... [more]
LSM12_CHICK1.120e-1227.62Protein LSM12 homolog OS=Gallus gallus GN=LSM12 PE... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0005K19_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005K19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188209 ID=CN188209; Name=CN188209; organism=Citrus sinensis; type=EST; length=682bp
GAGGATCAAATTCAATAATAAAAAAATTTGAGAGTTCTGAAGAATGGAGG
GTCAGGTTGGTGGGAGCGGTGAGGAGTTTGCAGTGGGATGCTTGCTCTCA
ATCAAGACCACTTTGGGCGATGAATTTGATGGCCAGGTCATGGCCTTCGA
CCGCTTCACCAACATGCTCGTTATTCAAGAGGGTTTGAAATCTGGGCCTC
GTAGAAACATCAGGCTGCTGAATGCTAATTATATTAAGGACTTTTCCTTT
CTCGGTCAAGCTGACGACCCTCTCGATCCCAAAAAATGTTTTCTTGATCT
TAGTCGTCTCCAAGCTAGAGAACATTTAGCCGTTAGGCAAGCTGAGGCTG
ATGCTCAGAGGATTGGCGTGGGAGTCACAACTGAAGCTCAGAACATTTTT
GATGCTTTGTCTAAGACGCTTCCTGTTCGCTGGGACAAGACTGTCATANT
TGTAATGAACGAAGTGCGTGTTAGCAGTCCGTATCTTCCTGAATCTGTTA
GCGGAGGAACTGCTGCAGCCAATGAGCGGGTGAAGAAAGTGCTTGAATTT
GAGAGAAAAAGGTTGCAAGCTCGTGGTTCCAGTCAAGGATGATTTCACCT
TTGCATTGCTGAATTCAGGAGAAGTGCCTTCAATGATACTATGTTGATTG
TACCCCACCTTAGGTACCATCTTATCTCAAGA
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