CN188209
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CN188209 vs. ExPASy Swiss-Prot
Match: LSM12_XENLA (Protein LSM12 homolog OS=Xenopus laevis GN=lsm12 PE=2 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 9.159e-15 Identity = 51/167 (30.54%), Postives = 84/167 (50.30%), Query Frame = 2 Query: 56 VGGSGEEFAVGCLLSIKTTLGDEFDGQVMAFDRFTNMLVIQEGLKSGP--RRNIRLLNANYIKDFSFLGQADDPLDPKKCFLDLSRLQAREHLAVRQAEADAQRIGVGVTTEAQNIFDALSKTL-PVRWDKTVIXVMNEVRVSSPYLPESVSGGTAAANERVKKVLE 547 + G GE FA+G +S +T G+V+AFD + ML ++ SG +I LLN +Y+ D + + P L++++L +R L + + A I GV+ + Q +F + KT+ +W + I VM+EV +S PY E+ G A V K++E Sbjct: 1 MAGPGEYFAIGAYVSCRTCQETRLQGEVVAFDYPSKMLALKCPSSSGKANHADILLLNLDYVSDVEVINERTQ-TPPPLASLNITKLASRARLEKEEKLSQAYAISAGVSLDGQQLFQTIHKTIKDCKWQEKNIVVMDEVVISPPYQVENCKGKEGRALTHVCKIVE 166
BLAST of CN188209 vs. ExPASy Swiss-Prot
Match: LS12A_DANRE (Protein LSM12 homolog A OS=Danio rerio GN=lsm12a PE=2 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 2.665e-14 Identity = 50/178 (28.09%), Postives = 89/178 (50.00%), Query Frame = 2 Query: 62 GSGEEFAVGCLLSIKTTLGDEFDGQVMAFDRFTNMLVIQEGLKSGPRR--NIRLLNANYIKDFSFLGQADDPLDPKKCFLDLSRLQAREHLAVRQAEADAQRIGVGVTTEAQNIFDALSKTL-PVRWDKTVIXVMNEVRVSSPYLPESVSGGTAAANERVKKVLEFERKRLQARGSSQ 586 G GE F+VG +S T LG G+V+AFD + ML ++ SG ++ L+N Y+ + + + P L++S+L R + A I GV+ E Q +F + KT+ +W + I VM++V +S PY E+ G +A ++K++E + ++++ + Q Sbjct: 5 GPGEYFSVGSHVSCLTCLGQRLQGEVVAFDYPSKMLTLKCPSSSGKPNLSDVILINLAYVSEVDIINDRTE-TPPPLASLNISKLANRARTEKEDKLSQAYAISAGVSIEGQQLFQTIHKTIKDCKWQEKNIIVMDDVVISPPYQVENCKGKEGSALSHIRKIVEKHFRDVESQKTMQ 181
BLAST of CN188209 vs. ExPASy Swiss-Prot
Match: LSM12_XENTR (Protein LSM12 homolog OS=Xenopus tropicalis GN=lsm12 PE=2 SV=2) HSP 1 Score: 77.411 bits (189), Expect = 7.754e-14 Identity = 50/167 (29.94%), Postives = 82/167 (49.10%), Query Frame = 2 Query: 56 VGGSGEEFAVGCLLSIKTTLGDEFDGQVMAFDRFTNMLVIQEGLKSGP--RRNIRLLNANYIKDFSFLGQADDPLDPKKCFLDLSRLQAREHLAVRQAEADAQRIGVGVTTEAQNIFDALSKTL-PVRWDKTVIXVMNEVRVSSPYLPESVSGGTAAANERVKKVLE 547 + G GE FA+G +S +T G+V+AFD + ML ++ SG +I LLN +Y+ D + + P L++++L +R L + + A I GV+ + Q +F + KT+ +W + I VM E +S PY E+ G A V K++E Sbjct: 1 MAGPGEYFAIGAYVSCRTCQETRLQGEVVAFDYPSKMLALKCPSSSGKPNHADILLLNLDYVSDVEVINERTQ-TPPPLASLNITKLASRARLEKEEKLSQAYAISAGVSLDGQQLFQTIHKTIKDCKWQEKNIVVMEEAVISPPYQVENCKGKEGRALCHVCKIVE 166
BLAST of CN188209 vs. ExPASy Swiss-Prot
Match: LSM12_PONAB (Protein LSM12 homolog OS=Pongo abelii GN=LSM12 PE=2 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 2.947e-13 Identity = 47/163 (28.83%), Postives = 81/163 (49.69%), Query Frame = 2 Query: 68 GEEFAVGCLLSIKTTLGDEFDGQVMAFDRFTNMLVIQEGLKSGP--RRNIRLLNANYIKDFSFLGQADDPLDPKKCFLDLSRLQAREHLAVRQAEADAQRIGVGVTTEAQNIFDALSKTL-PVRWDKTVIXVMNEVRVSSPYLPESVSGGTAAANERVKKVLE 547 GE F+VG +S +T G+V+AFD + ML ++ SG +I L+N Y+ + + + P L++S+L ++ + + A I GV+ E Q +F + KT+ +W + I VM EV ++ PY E+ G +A V+K++E Sbjct: 6 GEYFSVGSQVSCRTCQEQRLQGEVVAFDYQSKMLALKCPSSSGKPNHADILLINLQYVSEVEIINDRTE-TPPPLASLNVSKLASKARTEKEEKLSQAYAISAGVSLEGQQLFQTIHKTIKDCKWQEKNIVVMEEVVITPPYQVENCKGKEGSALSHVRKIVE 167
BLAST of CN188209 vs. ExPASy Swiss-Prot
Match: LSM12_MOUSE (Protein LSM12 homolog OS=Mus musculus GN=Lsm12 PE=1 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 2.947e-13 Identity = 47/163 (28.83%), Postives = 81/163 (49.69%), Query Frame = 2 Query: 68 GEEFAVGCLLSIKTTLGDEFDGQVMAFDRFTNMLVIQEGLKSGP--RRNIRLLNANYIKDFSFLGQADDPLDPKKCFLDLSRLQAREHLAVRQAEADAQRIGVGVTTEAQNIFDALSKTL-PVRWDKTVIXVMNEVRVSSPYLPESVSGGTAAANERVKKVLE 547 GE F+VG +S +T G+V+AFD + ML ++ SG +I L+N Y+ + + + P L++S+L ++ + + A I GV+ E Q +F + KT+ +W + I VM EV ++ PY E+ G +A V+K++E Sbjct: 6 GEYFSVGSQVSCRTCQEQRLQGEVVAFDYQSKMLALKCPSSSGKPNHADILLINLQYVSEVEIINDRTE-TPPPLASLNVSKLASKARTEKEEKLSQAYAISAGVSLEGQQLFQTIHKTIKDCKWQEKNIVVMEEVVITPPYQVENCKGKEGSALSHVRKIVE 167
BLAST of CN188209 vs. ExPASy Swiss-Prot
Match: LSM12_HUMAN (Protein LSM12 homolog OS=Homo sapiens GN=LSM12 PE=1 SV=2) HSP 1 Score: 75.485 bits (184), Expect = 2.947e-13 Identity = 47/163 (28.83%), Postives = 81/163 (49.69%), Query Frame = 2 Query: 68 GEEFAVGCLLSIKTTLGDEFDGQVMAFDRFTNMLVIQEGLKSGP--RRNIRLLNANYIKDFSFLGQADDPLDPKKCFLDLSRLQAREHLAVRQAEADAQRIGVGVTTEAQNIFDALSKTL-PVRWDKTVIXVMNEVRVSSPYLPESVSGGTAAANERVKKVLE 547 GE F+VG +S +T G+V+AFD + ML ++ SG +I L+N Y+ + + + P L++S+L ++ + + A I GV+ E Q +F + KT+ +W + I VM EV ++ PY E+ G +A V+K++E Sbjct: 6 GEYFSVGSQVSCRTCQEQRLQGEVVAFDYQSKMLALKCPSSSGKPNHADILLINLQYVSEVEIINDRTE-TPPPLASLNVSKLASKARTEKEEKLSQAYAISAGVSLEGQQLFQTIHKTIKDCKWQEKNIVVMEEVVITPPYQVENCKGKEGSALSHVRKIVE 167
BLAST of CN188209 vs. ExPASy Swiss-Prot
Match: LSM12_BOVIN (Protein LSM12 homolog OS=Bos taurus GN=LSM12 PE=2 SV=2) HSP 1 Score: 75.485 bits (184), Expect = 2.947e-13 Identity = 47/163 (28.83%), Postives = 81/163 (49.69%), Query Frame = 2 Query: 68 GEEFAVGCLLSIKTTLGDEFDGQVMAFDRFTNMLVIQEGLKSGP--RRNIRLLNANYIKDFSFLGQADDPLDPKKCFLDLSRLQAREHLAVRQAEADAQRIGVGVTTEAQNIFDALSKTL-PVRWDKTVIXVMNEVRVSSPYLPESVSGGTAAANERVKKVLE 547 GE F+VG +S +T G+V+AFD + ML ++ SG +I L+N Y+ + + + P L++S+L ++ + + A I GV+ E Q +F + KT+ +W + I VM EV ++ PY E+ G +A V+K++E Sbjct: 6 GEYFSVGSQVSCRTCQEQRLQGEVVAFDYQSKMLALKCPSSSGKPNHADILLINLQYVSEVEIINDRTE-TPPPLASLNVSKLASKARTEKEEKLSQAYAISAGVSLEGQQLFQTIHKTIKDCKWQEKNIVVMEEVVITPPYQVENCKGKEGSALSHVRKIVE 167
BLAST of CN188209 vs. ExPASy Swiss-Prot
Match: LS12B_DANRE (Protein LSM12 homolog B OS=Danio rerio GN=lsm12b PE=2 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 2.947e-13 Identity = 51/179 (28.49%), Postives = 91/179 (50.84%), Query Frame = 2 Query: 62 GSGEEFAVGCLLSIKTTLGDEFDGQVMAFDRFTNMLVIQEGLKSGPRR--NIRLLNANYIKDFSFL-GQADDPLDPKKCFLDLSRLQAREHLAVRQAEADAQRIGVGVTTEAQNIFDALSKTL-PVRWDKTVIXVMNEVRVSSPYLPESVSGGTAAANERVKKVLEFERKRLQARGSSQ 586 G GE F+VG +S T LG G+V+AFD + ML ++ SG ++ L+N Y+ + + +A+ P P L+ ++L R + A + GV+ E Q +F + KT+ +W + I VM++V +S PY ++ G +A V+K++E + ++++ S Q Sbjct: 5 GPGEYFSVGSHVSCLTCLGQRLQGEVVAFDYPSKMLTLKCAPSSGKPNLSDVMLVNLAYVSEVDIITDRAETP--PPLASLNFNKLVNRARAEKEDKLSLAYAVSAGVSVEGQQLFQTIHKTIKECKWQEKNIIVMDDVVISPPYQVDNCKGKEGSALSHVRKIVEKHFRDVESQISVQ 181
BLAST of CN188209 vs. ExPASy Swiss-Prot
Match: LSM12_CHICK (Protein LSM12 homolog OS=Gallus gallus GN=LSM12 PE=2 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.120e-12 Identity = 50/181 (27.62%), Postives = 88/181 (48.62%), Query Frame = 2 Query: 68 GEEFAVGCLLSIKTTLGDEFDGQVMAFDRFTNMLVIQEGLKSGP--RRNIRLLNANYIKDFSFLGQADDPLDPKKCFLDLSRLQAREHLAVRQAEADAQRIGVGVTTEAQNIFDALSKTL-PVRWDKTVIXVMNEVRVSSPYLPESVSGGTAAANERVKKVLE-----FERKRLQARGSSQ 586 GE F+VG +S +T G+V+AFD + ML ++ SG +I L+N Y+ + + + P L++S+L + + + + A I GV+ E Q +F + KT+ +W + I VM EV ++ PY E+ G +A V+K++E E +++ R +Q Sbjct: 5 GECFSVGSQVSCRTCQEQRLQGEVVAFDYPSKMLALKCPSSSGKPNHADILLVNLQYVSEVEIINDRTE-TPPPLASLNVSKLANKARMEKEEKLSQAYAISAGVSLEGQQLFQTIHKTIKDCKWQEKNIVVMEEVVIAPPYQVENCKGKEGSALGHVRKIVEKHFRDVESQKVMQRSQAQ 184 The following BLAST results are available for this feature:
BLAST of CN188209 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 9
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CN188209 ID=CN188209; Name=CN188209; organism=Citrus sinensis; type=EST; length=682bpback to top |