CN188205

Overview
NameCN188205
Unique NameCN188205
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length778
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CN188205 vs. ExPASy Swiss-Prot
Match: OCS1_MAIZE (Ocs element-binding factor 1 OS=Zea mays GN=OBF1 PE=2 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 1.352e-23
Identity = 58/127 (45.67%), Postives = 83/127 (65.35%), Query Frame = -1 
Query:  260 SSGSDSDPRYANVDERKRKRMISNRESARRSRMKKQKQMEDLVNEINHLESANAMLKQNIDSSVQRYVEMESANNILRAQAMELTDRLRSLNSVLQIWAEISGINVEIPE---IPDPLMKPWQLPCP 631
            +SGSD D   A    R+ KR +SNRESARRSR++KQ+ +++LV E+  L++ NA +         +Y  +E  N +LRA+A EL DRLRS+N VL++  E SG+ ++I E     DPL++PWQLP P
Sbjct:   13 TSGSDGDS--AADTHRREKRRLSNRESARRSRLRKQQHLDELVQEVARLQADNARVAARARDIASQYTRVEQENTVLRARAAELGDRLRSVNEVLRLVEEFSGVAMDIQEEMPADDPLLRPWQLPYP 137
The following BLAST results are available for this feature:
BLAST of CN188205 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
OCS1_MAIZE1.352e-2345.67Ocs element-binding factor 1 OS=Zea mays GN=OBF1 P... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0005K16_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005K16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188205 ID=CN188205; Name=CN188205; organism=Citrus sinensis; type=EST; length=778bp
GAGGTTTTTCAACACAGAATAAGTAAACCATAAATATAAAACCATAAATA
TAAACAGATAACAGGTGTCCGCAAAATGGCACTCCTCTTTGGAAAGAACA
CACATACCAGCGTTCATCTAACTTAACAATTCAACGAAAATAAAACATAA
CAAATCCTAGAACAGACAACCAGAAAGACCAACTTCCTTCAAGCAGGGAC
AAGGTGGAAAACCCATCCTAATCCTGCAACATATCGGCAGAAGCCACGAG
TGGCTGCATTGGACAGGGAAGCTGCCAAGGTTTCATAAGAGGGTCTGGAA
TCTCAGGAATCTCCACGTTAATGCCACTGATCTCAGCCCATATCTGGAGG
ACAGAGTTCAAGGAGCGCAAACGATCAGTCAGCTCCATAGCTTGAGCCCT
CAGAATGTTGTTGGCGGACTCCATTTCAACATAGCGTTGGACGGATGAAT
CAATGTTTTGCTTAAGCATGGCATTGGCACTTTCCAAATGGTTGATTTCA
TTGACCAAATCCTCCATCTGCTTCTGTTTCTTCATCCTTGACCTCCTGGC
CGATTCACGGTTCGATATCATCCTCTTCCTTTTCCGCTCGTCAACGTTCG
CATATCGCGGGTCGCTATCGGAGCCGGAACTTCCTTGTCTTTGAATTGAA
GCCATAAATTTGTTTTGTTTTTTCTTTCTAGTTTAATAAATATTAACTAC
TTACAATTAAGAAATCGAGGGTTGCAAACAAGAAAATGGATTAAAATAAT
TGGATACTAGAAAGCGTGATCAAACGAC
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