CN188195

Overview
NameCN188195
Unique NameCN188195
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length787
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12758 contig Csv1_Contig12758:113..899. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188195 vs. ExPASy Swiss-Prot
Match: RL15_PETHY (60S ribosomal protein L15 OS=Petunia hybrida GN=RPL15 PE=2 SV=1)

HSP 1 Score: 323.939 bits (829), Expect = 6.041e-88
Identity = 161/192 (83.85%), Postives = 165/192 (85.94%), Query Frame = -3
Query:  210 KKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKRNQTLSLRRYR 785
            KKQSDVMRFLQRVRCWEYRQ PSIVRVTRPTRPDKARRLGYKAKQ                    GIVYGKPTNQGVTQLKFQR+KRSVAEERAGRKLGGL+VLNSYWINEDSTYKYFEVILVD AH AIRNDPRINWIC PVHKHRELRGLTSAGKKYRGLRG+GHLH+KA PSRRA WKRNQTLSL RYR
Sbjct:   13 KKQSDVMRFLQRVRCWEYRQLPSIVRVTRPTRPDKARRLGYKAKQGYVVYRVRVKRGGRKRPVPKGIVYGKPTNQGVTQLKFQRTKRSVAEERAGRKLGGLRVLNSYWINEDSTYKYFEVILVDQAHAAIRNDPRINWICNPVHKHRELRGLTSAGKKYRGLRGRGHLHNKAPPSRRANWKRNQTLSLPRYR 204          
BLAST of CN188195 vs. ExPASy Swiss-Prot
Match: RL151_ARATH (60S ribosomal protein L15-1 OS=Arabidopsis thaliana GN=RPL15A PE=2 SV=1)

HSP 1 Score: 315.849 bits (808), Expect = 1.645e-85
Identity = 153/192 (79.69%), Postives = 163/192 (84.90%), Query Frame = -3
Query:  210 KKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKRNQTLSLRRYR 785
            KKQSDVMRFLQRVRCWEYRQ PSIVR+ RPTRPDKARRLGYKAKQ                    GIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGL+V+NSYW+NEDSTYKY+E+ILVD AHNA+RNDPRINWIC PVHKHRELRGLTS GKK RGLRGKGH +HK RPSRRATWK+N +LSLRRYR
Sbjct:   13 KKQSDVMRFLQRVRCWEYRQQPSIVRLVRPTRPDKARRLGYKAKQGFVVYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVVNSYWLNEDSTYKYYEIILVDPAHNAVRNDPRINWICNPVHKHRELRGLTSEGKKNRGLRGKGHNNHKNRPSRRATWKKNNSLSLRRYR 204          
BLAST of CN188195 vs. ExPASy Swiss-Prot
Match: RL152_ARATH (60S ribosomal protein L15-2 OS=Arabidopsis thaliana GN=RPL15B PE=2 SV=1)

HSP 1 Score: 315.079 bits (806), Expect = 2.806e-85
Identity = 152/192 (79.17%), Postives = 163/192 (84.90%), Query Frame = -3
Query:  210 KKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKRNQTLSLRRYR 785
            KKQSDVMRFLQRVRCWEYRQ PSIVR+ RPTRPDKARRLGYKAKQ                    GIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGL+V+NSYW+NEDSTYKY+E+ILVD AHNA+RNDPRINWIC PVHKHRELRGLTS GKK RGLRGKGH +HK RPSRRATWK+N ++SLRRYR
Sbjct:   13 KKQSDVMRFLQRVRCWEYRQQPSIVRLVRPTRPDKARRLGYKAKQGFVVYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVVNSYWLNEDSTYKYYEIILVDPAHNAVRNDPRINWICNPVHKHRELRGLTSEGKKNRGLRGKGHNNHKNRPSRRATWKKNNSISLRRYR 204          
BLAST of CN188195 vs. ExPASy Swiss-Prot
Match: RL15B_PICMA (60S ribosomal protein L15-2 OS=Picea mariana GN=SB62 PE=2 SV=1)

HSP 1 Score: 313.923 bits (803), Expect = 6.251e-85
Identity = 152/192 (79.17%), Postives = 161/192 (83.85%), Query Frame = -3
Query:  210 KKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKRNQTLSLRRYR 785
            KKQSDVMRFLQRVRCWEYRQ P IVR+T PTRPDKARRLGYKAKQ                    GIVYGKP NQG+TQLKFQRS RSVAEERAGRKLGGL+VLNSYWIN+DSTYKY+EV+LVD AH  IRNDPRINWIC  VHKHRELRGLTSAGKKYRGLRG+GHL+HKARPS+RATWKRN TLSLRRYR
Sbjct:   13 KKQSDVMRFLQRVRCWEYRQLPGIVRITHPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGIVYGKPKNQGITQLKFQRSLRSVAEERAGRKLGGLRVLNSYWINQDSTYKYYEVVLVDQAHTVIRNDPRINWICNAVHKHRELRGLTSAGKKYRGLRGRGHLYHKARPSKRATWKRNNTLSLRRYR 204          
BLAST of CN188195 vs. ExPASy Swiss-Prot
Match: RL15A_PICMA (60S ribosomal protein L15-1 OS=Picea mariana GN=SB61 PE=2 SV=1)

HSP 1 Score: 312.768 bits (800), Expect = 1.393e-84
Identity = 152/192 (79.17%), Postives = 163/192 (84.90%), Query Frame = -3
Query:  210 KKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKRNQTLSLRRYR 785
            KKQSDVMRFLQRVRCWE+RQ P IVRVTRP+RPDKARRLGYKAKQ                    GIVYGKP NQG+TQLKFQRS RSVAEERAGRKLGGL+VLNSYWIN+DSTYKY+E+ILVD AH+AIR DPRINWIC  VHKHRELRGLTSAGKKYRGLRG+GHL+HKARPS+RATWKRN TLSLRRYR
Sbjct:   13 KKQSDVMRFLQRVRCWEFRQLPGIVRVTRPSRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGIVYGKPKNQGITQLKFQRSLRSVAEERAGRKLGGLRVLNSYWINQDSTYKYYEIILVDQAHSAIRKDPRINWICNAVHKHRELRGLTSAGKKYRGLRGRGHLYHKARPSKRATWKRNNTLSLRRYR 204          
BLAST of CN188195 vs. ExPASy Swiss-Prot
Match: RL15_NEUCR (60S ribosomal protein L15 OS=Neurospora crassa GN=rpl-15 PE=3 SV=1)

HSP 1 Score: 246.514 bits (628), Expect = 1.226e-64
Identity = 126/192 (65.62%), Postives = 138/192 (71.88%), Query Frame = -3
Query:  210 KKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKRNQTLSLRRYR 785
            KKQSDV+RFL RVRCWE RQ   I R +RP+RPDKARRLGYKAKQ                    G  YGKPTNQGV QLK+QRS +S AEER GR+   L+VLNSYWIN+DSTYKYFEVILVD  H AIR DPRINWI  PVHKHRE RGLTS GK+ RGL  KGH ++K R  RR TWKR+ TLSL RYR
Sbjct:   13 KKQSDVVRFLLRVRCWELRQLNVIHRASRPSRPDKARRLGYKAKQGYVIYRARVRRGGRKKPVPKGATYGKPTNQGVNQLKYQRSLKSTAEERVGRRCANLRVLNSYWINQDSTYKYFEVILVDPQHKAIRRDPRINWIVNPVHKHRESRGLTSTGKRSRGL-NKGHRYNKTRAGRRKTWKRHNTLSLWRYR 203          
BLAST of CN188195 vs. ExPASy Swiss-Prot
Match: RL15B_YEAST (60S ribosomal protein L15-B OS=Saccharomyces cerevisiae GN=RPL15B PE=1 SV=2)

HSP 1 Score: 243.047 bits (619), Expect = 1.355e-63
Identity = 122/192 (63.54%), Postives = 134/192 (69.79%), Query Frame = -3
Query:  210 KKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKRNQTLSLRRYR 785
            KKQSDV+RFLQRVR WEYRQ   I R  RPTRPDKARRLGYKAKQ                    G  YGKPTNQGV +LK+QRS R+ AEER GR+   L+VLNSYW+N+DSTYKYFEVILVD  H AIR D R NWIC PVHKHRE RGLT+ GKK RG+  KGH  +  +  RR TWKR  TLSL RYR
Sbjct:   13 KKQSDVLRFLQRVRVWEYRQKNVIHRAARPTRPDKARRLGYKAKQGFVIYRVRVRRGNRKRPVPKGATYGKPTNQGVNELKYQRSLRATAEERVGRRAANLRVLNSYWVNQDSTYKYFEVILVDPQHKAIRRDARYNWICNPVHKHREARGLTATGKKSRGI-NKGHKFNNTKAGRRKTWKRQNTLSLWRYR 203          
BLAST of CN188195 vs. ExPASy Swiss-Prot
Match: RL15A_YEAST (60S ribosomal protein L15-A OS=Saccharomyces cerevisiae GN=RPL15A PE=1 SV=3)

HSP 1 Score: 242.662 bits (618), Expect = 1.770e-63
Identity = 122/192 (63.54%), Postives = 134/192 (69.79%), Query Frame = -3
Query:  210 KKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGHLHHKARPSRRATWKRNQTLSLRRYR 785
            KKQSDV+RFLQRVR WEYRQ   I R  RPTRPDKARRLGYKAKQ                    G  YGKPTNQGV +LK+QRS R+ AEER GR+   L+VLNSYW+N+DSTYKYFEVILVD  H AIR D R NWIC PVHKHRE RGLT+ GKK RG+  KGH  +  +  RR TWKR  TLSL RYR
Sbjct:   13 KKQSDVLRFLQRVRVWEYRQKNVIHRAARPTRPDKARRLGYKAKQGFVIYRVRVRRGNRKRPVPKGATYGKPTNQGVNELKYQRSLRATAEERVGRRAANLRVLNSYWVNQDSTYKYFEVILVDPQHKAIRRDARYNWICDPVHKHREARGLTATGKKSRGI-NKGHKFNNTKAGRRKTWKRQNTLSLWRYR 203          
BLAST of CN188195 vs. ExPASy Swiss-Prot
Match: RL15_RAT (60S ribosomal protein L15 OS=Rattus norvegicus GN=Rpl15 PE=1 SV=2)

HSP 1 Score: 238.039 bits (606), Expect = 4.359e-62
Identity = 122/193 (63.21%), Postives = 135/193 (69.95%), Query Frame = -3
Query:  210 KKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGH-LHHKARPSRRATWKRNQTLSLRRYR 785
            KKQSDVMRFL RVRCW+YRQ  ++ R  RPTRPDKARRLGYKAKQ                    G  YGKP + GV QLKF RS +SVAEERAGR  G L+VLNSYW+ EDSTYK+FEVIL+D  H AIR +P   WI KPVHKHRE+RGLTSAG+K RGL GKGH  HH    SRRA W+R  TL L RYR
Sbjct:   13 KKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYVIYRIRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGL-GKGHKFHHTIGGSRRAAWRRRNTLQLHRYR 204          
BLAST of CN188195 vs. ExPASy Swiss-Prot
Match: RL15_PONAB (60S ribosomal protein L15 OS=Pongo abelii GN=RPL15 PE=2 SV=3)

HSP 1 Score: 238.039 bits (606), Expect = 4.359e-62
Identity = 122/193 (63.21%), Postives = 135/193 (69.95%), Query Frame = -3
Query:  210 KKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXXXXXXXXXXXXXXXXGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYWINEDSTYKYFEVILVDAAHNAIRNDPRINWICKPVHKHRELRGLTSAGKKYRGLRGKGH-LHHKARPSRRATWKRNQTLSLRRYR 785
            KKQSDVMRFL RVRCW+YRQ  ++ R  RPTRPDKARRLGYKAKQ                    G  YGKP + GV QLKF RS +SVAEERAGR  G L+VLNSYW+ EDSTYK+FEVIL+D  H AIR +P   WI KPVHKHRE+RGLTSAG+K RGL GKGH  HH    SRRA W+R  TL L RYR
Sbjct:   13 KKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYVIYRIRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYWVGEDSTYKFFEVILIDPFHKAIRRNPDTQWITKPVHKHREMRGLTSAGRKSRGL-GKGHKFHHTIGGSRRAAWRRRNTLQLHRYR 204          
The following BLAST results are available for this feature:
BLAST of CN188195 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
RL15_PETHY6.041e-8883.8560S ribosomal protein L15 OS=Petunia hybrida GN=RP... [more]
RL151_ARATH1.645e-8579.6960S ribosomal protein L15-1 OS=Arabidopsis thalian... [more]
RL152_ARATH2.806e-8579.1760S ribosomal protein L15-2 OS=Arabidopsis thalian... [more]
RL15B_PICMA6.251e-8579.1760S ribosomal protein L15-2 OS=Picea mariana GN=SB... [more]
RL15A_PICMA1.393e-8479.1760S ribosomal protein L15-1 OS=Picea mariana GN=SB... [more]
RL15_NEUCR1.226e-6465.6360S ribosomal protein L15 OS=Neurospora crassa GN=... [more]
RL15B_YEAST1.355e-6363.5460S ribosomal protein L15-B OS=Saccharomyces cerev... [more]
RL15A_YEAST1.770e-6363.5460S ribosomal protein L15-A OS=Saccharomyces cerev... [more]
RL15_RAT4.359e-6263.2160S ribosomal protein L15 OS=Rattus norvegicus GN=... [more]
RL15_PONAB4.359e-6263.2160S ribosomal protein L15 OS=Pongo abelii GN=RPL15... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0005K11_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005K11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188195 ID=CN188195; Name=CN188195; organism=Citrus sinensis; type=EST; length=787bp
GGGGGGAAGGCAGGGCCCCCTTTTTATAGAGGTATTCATCTGGATAAAAC
AATCCATAGGAATTACAATATTCAATTGCCCAAATGAAACAAAATTAACC
ATGATGCAGCAAAAACTAACCCAAAACACTTGTTTCGGAGTTCAAACTCA
ACAGCAATTAAACTAGGTTGATAATGTGAAAAACACAAAGTAAACAATAC
AGAAGTTTAACGGTAACGCCTGAGCGAGAGAGTTTGGTTCCTCTTCCAGG
TTGCCCTTCTTGAAGGTCGTGCCTTGTGGTGCAAGTGACCCTTTCCTCGG
AGACCTCTGTACTTCTTCCCAGCAGAAGTGAGTCCACGAAGCTCCCTGTG
CTTGTGGACAGGCTTACAGATCCAGTTGATCCTGGGGTCATTGCGGATTG
CATTGTGGGCAGCATCCACCAGGATTACCTCAAAGTACTTGTAAGTTGAA
TCCTCATTGATCCAGTATGAGTTGAGAACCTTAAGGCCACCAAGCTTACG
ACCGGCACGTTCCTCAGCAACTGAACGCTTGCTGCGCTGGAATTTAAGCT
GAGTGACACCCTGGTTTGTCGGTTTACCATATACAATACCCTTGGGAACT
GGTCTCTTTCGTCCTCCACGTCTTACACGCACACGATAAACGACATAACC
CTGCTTGGCCTTGTAGCCCAAGCGGCGAGCCTTGTCGGGGCGAGTGGGAC
GGGTGACGCGGACGATGGAAGGGTGCTGACGGTACTCCCAGCACCTCACC
CTCTGCAAGAACCTCATCACATCCGACTGCTTCTTCC
back to top