CN188192

Overview
NameCN188192
Unique NameCN188192
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length694
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12761 contig Csv1_Contig12761:20..713. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188192 vs. ExPASy Swiss-Prot
Match: GDIA_MOUSE (Rab GDP dissociation inhibitor alpha OS=Mus musculus GN=Gdi1 PE=1 SV=3)

HSP 1 Score: 245.743 bits (626), Expect = 1.689e-64
Identity = 119/190 (62.63%), Postives = 153/190 (80.53%), Query Frame = 3
Query:  126 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLN-LIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALA 692
            MDEEYDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGESSS+  L +L+KRF+  E PP  +G  RD+NVD+IPKF++ANG LV++L++T+VT+YL FK V+GSFVY  GK++KVP+T+ EAL S LMG+FEKRR RKF ++V ++DENDPKT EG+D    + R++  K+ L  + IDF GHALA
Sbjct:    1 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQILEGPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVPSTETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQNTSMRDVYRKFDLGQDVIDFTGHALA 190          
BLAST of CN188192 vs. ExPASy Swiss-Prot
Match: GDIA_RAT (Rab GDP dissociation inhibitor alpha OS=Rattus norvegicus GN=Gdi1 PE=1 SV=1)

HSP 1 Score: 245.358 bits (625), Expect = 2.207e-64
Identity = 119/190 (62.63%), Postives = 153/190 (80.53%), Query Frame = 3
Query:  126 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLN-LIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALA 692
            MDEEYDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGESSS+  L +L+KRF+  E PP  +G  RD+NVD+IPKF++ANG LV++L++T+VT+YL FK V+GSFVY  GK++KVP+T+ EAL S LMG+FEKRR RKF ++V ++DENDPKT EG+D    + R++  K+ L  + IDF GHALA
Sbjct:    1 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLEGPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVPSTETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQTTSMRDVYRKFDLGQDVIDFTGHALA 190          
BLAST of CN188192 vs. ExPASy Swiss-Prot
Match: GDIA_PONPY (Rab GDP dissociation inhibitor alpha OS=Pongo pygmaeus GN=GDI1 PE=2 SV=1)

HSP 1 Score: 245.358 bits (625), Expect = 2.207e-64
Identity = 119/190 (62.63%), Postives = 153/190 (80.53%), Query Frame = 3
Query:  126 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLN-LIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALA 692
            MDEEYDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGESSS+  L +L+KRF+  E PP  +G  RD+NVD+IPKF++ANG LV++L++T+VT+YL FK V+GSFVY  GK++KVP+T+ EAL S LMG+FEKRR RKF ++V ++DENDPKT EG+D    + R++  K+ L  + IDF GHALA
Sbjct:    1 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLEGPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVPSTETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQTTSMRDVYRKFDLGQDVIDFTGHALA 190          
BLAST of CN188192 vs. ExPASy Swiss-Prot
Match: GDIA_PANTR (Rab GDP dissociation inhibitor alpha OS=Pan troglodytes GN=GDI1 PE=2 SV=1)

HSP 1 Score: 245.358 bits (625), Expect = 2.207e-64
Identity = 119/190 (62.63%), Postives = 153/190 (80.53%), Query Frame = 3
Query:  126 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLN-LIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALA 692
            MDEEYDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGESSS+  L +L+KRF+  E PP  +G  RD+NVD+IPKF++ANG LV++L++T+VT+YL FK V+GSFVY  GK++KVP+T+ EAL S LMG+FEKRR RKF ++V ++DENDPKT EG+D    + R++  K+ L  + IDF GHALA
Sbjct:    1 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLEGPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVPSTETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQTTSMRDVYRKFDLGQDVIDFTGHALA 190          
BLAST of CN188192 vs. ExPASy Swiss-Prot
Match: GDIA_MACFA (Rab GDP dissociation inhibitor alpha OS=Macaca fascicularis GN=GDI1 PE=2 SV=1)

HSP 1 Score: 245.358 bits (625), Expect = 2.207e-64
Identity = 119/190 (62.63%), Postives = 153/190 (80.53%), Query Frame = 3
Query:  126 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLN-LIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALA 692
            MDEEYDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGESSS+  L +L+KRF+  E PP  +G  RD+NVD+IPKF++ANG LV++L++T+VT+YL FK V+GSFVY  GK++KVP+T+ EAL S LMG+FEKRR RKF ++V ++DENDPKT EG+D    + R++  K+ L  + IDF GHALA
Sbjct:    1 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLEGPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVPSTETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQTTSMRDVYRKFDLGQDVIDFTGHALA 190          
BLAST of CN188192 vs. ExPASy Swiss-Prot
Match: GDIA_HUMAN (Rab GDP dissociation inhibitor alpha OS=Homo sapiens GN=GDI1 PE=1 SV=2)

HSP 1 Score: 245.358 bits (625), Expect = 2.207e-64
Identity = 119/190 (62.63%), Postives = 153/190 (80.53%), Query Frame = 3
Query:  126 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLN-LIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALA 692
            MDEEYDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGESSS+  L +L+KRF+  E PP  +G  RD+NVD+IPKF++ANG LV++L++T+VT+YL FK V+GSFVY  GK++KVP+T+ EAL S LMG+FEKRR RKF ++V ++DENDPKT EG+D    + R++  K+ L  + IDF GHALA
Sbjct:    1 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLEGPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVPSTETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQTTSMRDVYRKFDLGQDVIDFTGHALA 190          
BLAST of CN188192 vs. ExPASy Swiss-Prot
Match: GDIA_BOVIN (Rab GDP dissociation inhibitor alpha OS=Bos taurus GN=GDI1 PE=1 SV=1)

HSP 1 Score: 245.358 bits (625), Expect = 2.207e-64
Identity = 119/190 (62.63%), Postives = 153/190 (80.53%), Query Frame = 3
Query:  126 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLN-LIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALA 692
            MDEEYDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGESSS+  L +L+KRF+  E PP  +G  RD+NVD+IPKF++ANG LV++L++T+VT+YL FK V+GSFVY  GK++KVP+T+ EAL S LMG+FEKRR RKF ++V ++DENDPKT EG+D    + R++  K+ L  + IDF GHALA
Sbjct:    1 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLEGPPETMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVPSTETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQNTSMRDVYRKFDLGQDVIDFTGHALA 190          
BLAST of CN188192 vs. ExPASy Swiss-Prot
Match: GDIA_CANFA (Rab GDP dissociation inhibitor alpha OS=Canis familiaris GN=GDI1 PE=2 SV=1)

HSP 1 Score: 244.588 bits (623), Expect = 3.764e-64
Identity = 118/190 (62.11%), Postives = 153/190 (80.53%), Query Frame = 3
Query:  126 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLN-LIQLWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALA 692
            MDEEYDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGESSS+  L +L+KRF+  E PP  +G  RD+NVD+IPKF++ANG LV++L++T+VT+YL FK V+GSF+Y  GK++KVP+T+ EAL S LMG+FEKRR RKF ++V ++DENDPKT EG+D    + R++  K+ L  + IDF GHALA
Sbjct:    1 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLEGPPEAMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFIYKGGKIYKVPSTETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQSTSMRDVYRKFDLGQDVIDFTGHALA 190          
BLAST of CN188192 vs. ExPASy Swiss-Prot
Match: GDIB_BOVIN (Rab GDP dissociation inhibitor beta OS=Bos taurus GN=GDI2 PE=2 SV=3)

HSP 1 Score: 242.662 bits (618), Expect = 1.430e-63
Identity = 116/190 (61.05%), Postives = 152/190 (80.00%), Query Frame = 3
Query:  126 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQ-LWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALA 692
            M+EEYDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGES+S+  ++ L+KRF+    PPA +G  RD+NVD+IPKF++ANG LV++L+ T+VT+YL FK  +GSFVY  GK++KVP+T+ EAL S LMG+FEKRR RKF +YV ++DENDP+T EG+D  + + RE+  K+ L  + IDF GHALA
Sbjct:    1 MNEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESASITPLEDLYKRFKIPGAPPASMGRGRDWNVDLIPKFLMANGQLVKMLLFTEVTRYLDFKVTEGSFVYKGGKIYKVPSTEAEALASSLMGLFEKRRFRKFLVYVANFDENDPRTFEGIDPKKTSMREVYKKFDLGQDVIDFTGHALA 190          
BLAST of CN188192 vs. ExPASy Swiss-Prot
Match: GDIB_PIG (Rab GDP dissociation inhibitor beta OS=Sus scrofa GN=GDI2 PE=2 SV=1)

HSP 1 Score: 241.506 bits (615), Expect = 3.186e-63
Identity = 116/190 (61.05%), Postives = 150/190 (78.95%), Query Frame = 3
Query:  126 MDEEYDVIVLGTGLKECILSGLLSVDGLKVLHMDRNDYYGGESSSLNLIQ-LWKRFRGNEQPPAHLGSSRDYNVDMIPKFIIANGALVRVLIHTDVTKYLYFKAVDGSFVYNKGKVHKVPATDMEALKSPLMGIFEKRRARKFFIYVQDYDENDPKTHEGMDLTRVTTRELIAKYGLDDNTIDFIGHALA 692
            M+EEYDVIVLGTGL ECILSG++SV+G KVLHMDRN YYGGES+S+  ++ L+KRF     PPA +G  RD+NVD+IPKF++ANG LV++L+ T+VT+YL FK  +GSFVY  GK++KVP+T+ EAL S LMG+FEKRR RKF +YV ++DENDP+T EG+D  +   RE+  K+ L  + IDF GHALA
Sbjct:    1 MNEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESASITPLEDLYKRFNIPGAPPASMGRGRDWNVDLIPKFLMANGQLVKMLLFTEVTRYLDFKVTEGSFVYKGGKIYKVPSTEAEALASSLMGLFEKRRFRKFLVYVANFDENDPRTFEGVDPKKTAMREVYKKFDLGQDVIDFTGHALA 190          
The following BLAST results are available for this feature:
BLAST of CN188192 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
GDIA_MOUSE1.689e-6462.63Rab GDP dissociation inhibitor alpha OS=Mus muscul... [more]
GDIA_RAT2.207e-6462.63Rab GDP dissociation inhibitor alpha OS=Rattus nor... [more]
GDIA_PONPY2.207e-6462.63Rab GDP dissociation inhibitor alpha OS=Pongo pygm... [more]
GDIA_PANTR2.207e-6462.63Rab GDP dissociation inhibitor alpha OS=Pan troglo... [more]
GDIA_MACFA2.207e-6462.63Rab GDP dissociation inhibitor alpha OS=Macaca fas... [more]
GDIA_HUMAN2.207e-6462.63Rab GDP dissociation inhibitor alpha OS=Homo sapie... [more]
GDIA_BOVIN2.207e-6462.63Rab GDP dissociation inhibitor alpha OS=Bos taurus... [more]
GDIA_CANFA3.764e-6462.11Rab GDP dissociation inhibitor alpha OS=Canis fami... [more]
GDIB_BOVIN1.430e-6361.05Rab GDP dissociation inhibitor beta OS=Bos taurus ... [more]
GDIB_PIG3.186e-6361.05Rab GDP dissociation inhibitor beta OS=Sus scrofa ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005K09_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005K09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188192 ID=CN188192; Name=CN188192; organism=Citrus sinensis; type=EST; length=694bp
GAGGGCTCCTCCTTCTCTCACTCTAATTCCTTTCTTTGCTTCTATTAATA
TTACTCCCTTCACTTTGACCTAACCCACAAAAACCTCTGAATCAGAAATC
AAAAATCAAAAATCAAATCATCAACATGGATGAAGAGTATGATGTCATCG
TCTTGGGAACCGGTCTCAAGGAATGCATCCTCAGTGGTCTCCTCTCTGTT
GATGGCCTCAAGGTCCTGCACATGGACAGGAATGATTATTATGGAGGAGA
GTCATCATCGCTCAATCTCATTCAGCTCTGGAAGAGATTTAGGGGAAATG
AACAACCTCCTGCTCACTTGGGCTCTAGTAGGGATTATAATGTTGACATG
ATCCCGAAGTTTATAATTGCAAATGGAGCTCTTGTTCGTGTCCTCATTCA
TACTGATGTTACAAAGTATCTGTACTTCAAAGCTGTGGATGGCAGCTTCG
TCTATAATAAAGGAAAGGTCCATAAGGTGCCAGCAACTGATATGGAAGCG
CTCAAATCTCCACTCATGGGTATTTTTGAGAAGCGCCGTGCACGCAAGTT
TTTCATTTATGTTCAAGATTATGATGAAAATGATCCCAAAACACACGAGG
GAATGGACTTGACCAGGGTGACCACTAGAGAGTTGATTGCGAAGTATGGT
CTTGATGACAACACTATTGACTTCATTGGTCATGCATTGGCACT
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