EY666011

Overview
NameEY666011
Unique NameEY666011
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length859
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY666011_ssr50 microsatellite EY666011_ssr50:50..61. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY666011 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 2.693e-47
Identity = 94/136 (69.12%), Postives = 105/136 (77.21%), Query Frame = 2
Query:  113 IGVKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFXXXXXXXXXXXXXXXXXXXNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNK 520
            +GV EMLG PLN  +  R+SAP AS+PSTFK VALF                   ++ELAKWYGPDRRIFLP+GLLDRSEIPEYL GEV GDYGYDPFGL KKP++F+KYQA+ELIHARWAMLGAAGFIIPEA NK
Sbjct:    4 LGVSEMLGTPLNFRAVSRSSAPLASSPSTFKTVALFSKKKPAPAKSKAVSET---SDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAGFIIPEALNK 136          
BLAST of EY666011 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.792e-17
Identity = 41/76 (53.95%), Postives = 53/76 (69.74%), Query Frame = 2
Query:  293 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNK 520
            ++YGPDR  FL  G    ++ PEYLTGE PGDYG+D  GLS  P  F++Y+  ELIHARWA+LGA G + PE  ++
Sbjct:   32 EFYGPDRAKFL--GPFSENDTPEYLTGEFPGDYGWDTAGLSADPQTFARYREIELIHARWALLGALGILTPELLSQ 105          
BLAST of EY666011 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 7.152e-16
Identity = 40/75 (53.33%), Postives = 49/75 (65.33%), Query Frame = 2
Query:  296 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNK 520
            WYGPDR  +L        +IP YLTGE PGDYG+D  GLS  P+ F+K +  E+IH RWAMLGA G + PE  +K
Sbjct:   49 WYGPDRPKYLGPF---SDQIPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPEILSK 120          
BLAST of EY666011 vs. ExPASy Swiss-Prot
Match: CB29_MAIZE (Chlorophyll a-b binding protein M9, chloroplastic OS=Zea mays GN=CAB-M9 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 9.340e-16
Identity = 41/71 (57.75%), Postives = 50/71 (70.42%), Query Frame = 2
Query:  296 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPE 508
            WYGPDR ++L  G L   E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH+RWAMLGA G + PE
Sbjct:   49 WYGPDRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPE 116          
BLAST of EY666011 vs. ExPASy Swiss-Prot
Match: CB22_MAIZE (Chlorophyll a-b binding protein, chloroplastic OS=Zea mays PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.220e-15
Identity = 41/71 (57.75%), Postives = 49/71 (69.01%), Query Frame = 2
Query:  296 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPE 508
            WYGPDR ++L  G L   E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH RWAMLGA G + PE
Sbjct:   49 WYGPDRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPE 116          
BLAST of EY666011 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.593e-15
Identity = 39/72 (54.17%), Postives = 48/72 (66.67%), Query Frame = 2
Query:  293 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPE 508
            +WYGPDR  +L       +  P YLTGE PGDYG+D  GLS  P+ F KY+  E+IHARWA+LGA G + PE
Sbjct:   38 EWYGPDRAKWLGPF---STNTPAYLTGEFPGDYGWDTAGLSADPETFKKYRELEVIHARWALLGALGILTPE 106          
BLAST of EY666011 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.593e-15
Identity = 39/71 (54.93%), Postives = 48/71 (67.61%), Query Frame = 2
Query:  296 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPE 508
            WYGPDR ++L        E P YLTGE PGDYG+D  GLS  P++F+K +  E+IH RWAMLGA G + PE
Sbjct:   58 WYGPDRVLYLGPF---SGEPPSYLTGEFPGDYGWDTAGLSADPENFAKNRELEVIHCRWAMLGALGCVFPE 125          
BLAST of EY666011 vs. ExPASy Swiss-Prot
Match: CB28_PEA (Chlorophyll a-b binding protein 8, chloroplastic OS=Pisum sativum GN=CAB8 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.593e-15
Identity = 40/75 (53.33%), Postives = 49/75 (65.33%), Query Frame = 2
Query:  296 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNK 520
            WYGPDR  +L        E P YLTGE PGDYG+D  GLS  P+ FSK +  E+IH+RWAMLGA G + PE  ++
Sbjct:   52 WYGPDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSR 123          
BLAST of EY666011 vs. ExPASy Swiss-Prot
Match: CB24_PETSP (Chlorophyll a-b binding protein 25, chloroplastic OS=Petunia sp. GN=CAB25 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.593e-15
Identity = 40/73 (54.79%), Postives = 47/73 (64.38%), Query Frame = 2
Query:  296 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAF 514
            WYGPDR  +L        E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH RWAMLGA G + PE F
Sbjct:   50 WYGPDRVKYLGPF---SGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELF 119          
BLAST of EY666011 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.593e-15
Identity = 41/77 (53.25%), Postives = 49/77 (63.64%), Query Frame = 2
Query:  296 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKLV 526
            WYGPDR  +L       ++ P YL GE PGDYG+D  GLS  P+ F+K +A E+IH RWAMLGA G I PE   K V
Sbjct:   47 WYGPDRVKYLGPF---SAQTPSYLNGEFPGDYGWDTAGLSADPEAFAKNRALEVIHGRWAMLGALGCIFPEVLEKWV 120          
The following BLAST results are available for this feature:
BLAST of EY666011 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 60
Match NameE-valueIdentityDescription
CB26_ARATH2.693e-4769.12Chlorophyll a-b binding protein CP26, chloroplasti... [more]
CB2_DUNTE3.792e-1753.95Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB21_GOSHI7.152e-1653.33Chlorophyll a-b binding protein 151, chloroplastic... [more]
CB29_MAIZE9.340e-1657.75Chlorophyll a-b binding protein M9, chloroplastic ... [more]
CB22_MAIZE1.220e-1557.75Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB2_CHLMO1.593e-1554.17Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2B_PINSY1.593e-1554.93Chlorophyll a-b binding protein type 2 member 1B, ... [more]
CB28_PEA1.593e-1553.33Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB24_PETSP1.593e-1554.79Chlorophyll a-b binding protein 25, chloroplastic ... [more]
CB23_SOLLC1.593e-1553.25Chlorophyll a-b binding protein 13, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-102-011-G02-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY666011 ID=EY666011; Name=EY666011; organism=Citrus sinensis; type=EST; length=859bp
CCCACGCGTCCGCCCACGCGTCCGCCATTTCATTTCTCTAACACAAAGAA
GCAGCAGCAGCAACACTCTGAAGATGGCTTCATTGGCAGCATCGTCCACT
CCTGCTGCCTCCATTGGAGTTAAGGAGATGCTTGGCAACCCTCTCAATGT
CAGCAGTGCTGTTAGGACTTCAGCTCCAGGTGCATCAAACCCTTCTACTT
TCAAGCCCGTTGCTCTCTTCTCCAAGAAGAAAGCCGCCCCTCCTGCCAAG
TCTAAGCCCGTCGCCGTCTCCCCCGTTAACGAAGAGCTCGCCAAGTGGTA
TGGTCCTGACCGAAGAATTTTCTTGCCCGAGGGTCTCTTGGACAGATCTG
AGATCCCTGAGTACTTGACCGGAGAAGTTCCCGGAGACTATGGTTACGAT
CCTTTTGGTCTCAGCAAGAAACCAGACGACTTCAGCAAATATCAGGCATA
TGAATTGATTCATGCCAGATGGGCCATGCTTGGTGCTGCTGGTTTCATCA
TTCCTGAAGCCTTTAACAAGTTGGTGCTAACTGTGGTCAGGAACGTGAGA
AGGGTAGAAGAAGAAGGCTACGTCTTGGTGGGGAAGAATTAGGCTAGTTC
GGGGGAGAAGTCGGGAGCGAGGCTTAGGTTCGGAGGGGTNGGTGGGATTG
GGGGGGAGGGGGGCGCACGCCACAGAGCACGCCGGGGAGTAACGACTCAG
TGCGAAGTGGGAGGGGGCCGAACTCCCCACGGCAGCCGCGACTCACCAAA
AGCGGAGGGGCCACTTCCTCGNGCCGCGCAAGAACGCCACGACAAGTCAC
ACGGCCGCCGAGTGAACAGGTGTGCCGCTCCACGAGTCGTACAGATGACG
CGGAAGGGA
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