CN188178

Overview
NameCN188178
Unique NameCN188178
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length648
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12355 contig Csv1_Contig12355:503..1150. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188178 vs. ExPASy Swiss-Prot
Match: APX3_ARATH (L-ascorbate peroxidase 3, peroxisomal OS=Arabidopsis thaliana GN=APX3 PE=1 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 1.497e-56
Identity = 109/142 (76.76%), Postives = 114/142 (80.28%), Query Frame = -3
Query:  221 MGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLKFDNSYFVELLNGESEGLLQLPTDKALLEDPEFRRYVELYAKDEDAFFRDYAASHKKLSELGFSPGSGSKSTANDCTILXXXXXXXXXXXXXVILSYFYEVRKRMK 646
            MGLSDKDIVALSGGHTLGRAHPERSGFDGPWT+EPLKFDNSYFVELL GESEGLL+LPTDK LLEDPEFRR VELYAKDEDAFFRDYA SHKKLSELGF+P S +     D TIL             V   YFYE+RKRMK
Sbjct:  146 MGLSDKDIVALSGGHTLGRAHPERSGFDGPWTQEPLKFDNSYFVELLKGESEGLLKLPTDKTLLEDPEFRRLVELYAKDEDAFFRDYAESHKKLSELGFNPNSSAGKAVADSTILAQSAFGVAVAAAVVAFGYFYEIRKRMK 287          
BLAST of CN188178 vs. ExPASy Swiss-Prot
Match: APX4_ORYSJ (Probable L-ascorbate peroxidase 4 OS=Oryza sativa subsp. japonica GN=APX4 PE=2 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 9.399e-51
Identity = 102/146 (69.86%), Postives = 115/146 (78.77%), Query Frame = -3
Query:  221 MGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLKFDNSYFVELLNGESEGLLQLPTDKALLEDPEFRRYVELYAKDEDAFFRDYAASHKKLSELGFSP-GSGSKSTANDCT---ILXXXXXXXXXXXXXVILSYFYEVRKRMK 646
            MGLSDKDIVALSGGHTLGRAHPERSGF+G WT+EPLKFDNSYF+ELL GESEGLL+LPTDKALLEDP FRRYV+LYA+DED FF+DYA SHKKLSELGF+P  SG  ST +D +   +L             VI+SY YE  K+ K
Sbjct:  146 MGLSDKDIVALSGGHTLGRAHPERSGFEGAWTQEPLKFDNSYFLELLKGESEGLLKLPTDKALLEDPSFRRYVDLYARDEDTFFKDYAESHKKLSELGFTPRSSGPASTKSDLSTGAVLAQSAVGVAVAAAVVIVSYLYEASKKSK 291          
BLAST of CN188178 vs. ExPASy Swiss-Prot
Match: APX3_ORYSJ (Probable L-ascorbate peroxidase 3 OS=Oryza sativa subsp. japonica GN=APX3 PE=2 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 3.129e-46
Identity = 87/101 (86.14%), Postives = 94/101 (93.07%), Query Frame = -3
Query:  344 MGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLKFDNSYFVELLNGESEGLLQLPTDKALLEDPEFRRYVELYAKDEDAFFRDYAASHKKLSELGFSP 646
            MGLSDKDIVALSGGHTLG+A PERSGFDG WT++PLKFDNSYF+ELL   SEGLL+LPTDKAL+EDP FRRYVELYAKDEDAFFRDYA SHKKLSELGF+P
Sbjct:  147 MGLSDKDIVALSGGHTLGKARPERSGFDGAWTKDPLKFDNSYFIELLKENSEGLLKLPTDKALVEDPTFRRYVELYAKDEDAFFRDYAESHKKLSELGFTP 247          
BLAST of CN188178 vs. ExPASy Swiss-Prot
Match: APX3_ORYSI (Probable L-ascorbate peroxidase 3 OS=Oryza sativa subsp. indica GN=APX3 PE=2 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 3.129e-46
Identity = 87/101 (86.14%), Postives = 94/101 (93.07%), Query Frame = -3
Query:  344 MGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLKFDNSYFVELLNGESEGLLQLPTDKALLEDPEFRRYVELYAKDEDAFFRDYAASHKKLSELGFSP 646
            MGLSDKDIVALSGGHTLG+A PERSGFDG WT++PLKFDNSYF+ELL   SEGLL+LPTDKAL+EDP FRRYVELYAKDEDAFFRDYA SHKKLSELGF+P
Sbjct:  147 MGLSDKDIVALSGGHTLGKARPERSGFDGAWTKDPLKFDNSYFIELLKENSEGLLKLPTDKALVEDPTFRRYVELYAKDEDAFFRDYAESHKKLSELGFTP 247          
BLAST of CN188178 vs. ExPASy Swiss-Prot
Match: APX5_ARATH (L-ascorbate peroxidase 5, peroxisomal OS=Arabidopsis thaliana GN=APX5 PE=2 SV=2)

HSP 1 Score: 168.318 bits (425), Expect = 3.030e-41
Identity = 79/101 (78.22%), Postives = 90/101 (89.11%), Query Frame = -3
Query:  344 MGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLKFDNSYFVELLNGESEGLLQLPTDKALLEDPEFRRYVELYAKDEDAFFRDYAASHKKLSELGFSP 646
            MGL D+DIVALSGGHTLGRAH ERS F+GPWT++PLKFDNSYFVELL GE+ GLLQL TDKALL+DP+F  +V+LYAKDED FF+ YA SHKKLSELGF+P
Sbjct:  144 MGLLDRDIVALSGGHTLGRAHKERSDFEGPWTQDPLKFDNSYFVELLKGETPGLLQLKTDKALLDDPKFHPFVKLYAKDEDMFFKAYAISHKKLSELGFNP 244          
BLAST of CN188178 vs. ExPASy Swiss-Prot
Match: APX1_ORYSJ (L-ascorbate peroxidase 1, cytosolic OS=Oryza sativa subsp. japonica GN=APX1 PE=1 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 6.319e-39
Identity = 76/100 (76.00%), Postives = 84/100 (84.00%), Query Frame = -3
Query:  347 MGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLKFDNSYFVELLNGESEGLLQLPTDKALLEDPEFRRYVELYAKDEDAFFRDYAASHKKLSELGFS 646
            MGLSD+DIVALSGGHTLGR H ERSGF+GPWTR PL+FDNSYF ELL+G+ EGLLQLP+DKALL DP FR  VE YA DE AFF DY  +H KLSELGF+
Sbjct:  149 MGLSDQDIVALSGGHTLGRCHKERSGFEGPWTRNPLQFDNSYFTELLSGDKEGLLQLPSDKALLSDPAFRPLVEKYAADEKAFFEDYKEAHLKLSELGFA 248          
BLAST of CN188178 vs. ExPASy Swiss-Prot
Match: APX2_ORYSJ (L-ascorbate peroxidase 2, cytosolic OS=Oryza sativa subsp. japonica GN=APX2 PE=1 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 3.136e-38
Identity = 76/100 (76.00%), Postives = 83/100 (83.00%), Query Frame = -3
Query:  347 MGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLKFDNSYFVELLNGESEGLLQLPTDKALLEDPEFRRYVELYAKDEDAFFRDYAASHKKLSELGFS 646
            MGLSDKDIVALSGGHTLGR H ERSGF+G WT  PL FDNSYF EL++GE EGLLQLP+DKAL+ DP FR  VE YA DEDAFF DYA +H KLSELGF+
Sbjct:  150 MGLSDKDIVALSGGHTLGRCHKERSGFEGAWTSNPLIFDNSYFTELVSGEKEGLLQLPSDKALMADPAFRPLVEKYAADEDAFFADYAEAHLKLSELGFA 249          
BLAST of CN188178 vs. ExPASy Swiss-Prot
Match: APX1_ORYSI (L-ascorbate peroxidase 1, cytosolic OS=Oryza sativa subsp. indica GN=APX1 PE=2 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 5.349e-38
Identity = 75/100 (75.00%), Postives = 83/100 (83.00%), Query Frame = -3
Query:  347 MGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLKFDNSYFVELLNGESEGLLQLPTDKALLEDPEFRRYVELYAKDEDAFFRDYAASHKKLSELGFS 646
            MGLSD+DIVALSGGHTLGR H ERSGF+GPWTR PL+FDNSYF ELL+G+ EGLLQLP+DKALL DP F   VE YA DE AFF DY  +H KLSELGF+
Sbjct:  149 MGLSDQDIVALSGGHTLGRCHKERSGFEGPWTRNPLQFDNSYFTELLSGDKEGLLQLPSDKALLSDPAFCPLVEKYAADEKAFFEDYKEAHLKLSELGFA 248          
BLAST of CN188178 vs. ExPASy Swiss-Prot
Match: APX2_ARATH (L-ascorbate peroxidase 2, cytosolic OS=Arabidopsis thaliana GN=APX2 PE=2 SV=3)

HSP 1 Score: 156.762 bits (395), Expect = 9.124e-38
Identity = 75/100 (75.00%), Postives = 83/100 (83.00%), Query Frame = -3
Query:  347 MGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLKFDNSYFVELLNGESEGLLQLPTDKALLEDPEFRRYVELYAKDEDAFFRDYAASHKKLSELGFS 646
            MGL+DKDIVALSGGHTLGR H ERSGF+G WT  PL FDNSYF E+L+GE EGLLQLPTDKALL+DP F  +VE YA DEDAFF DY  +H KLSELGF+
Sbjct:  149 MGLNDKDIVALSGGHTLGRCHKERSGFEGAWTPNPLIFDNSYFKEILSGEKEGLLQLPTDKALLDDPLFLPFVEKYAADEDAFFEDYTEAHLKLSELGFA 248          
BLAST of CN188178 vs. ExPASy Swiss-Prot
Match: APX1_PEA (L-ascorbate peroxidase, cytosolic OS=Pisum sativum GN=APX1 PE=1 SV=2)

HSP 1 Score: 153.68 bits (387), Expect = 7.724e-37
Identity = 74/100 (74.00%), Postives = 81/100 (81.00%), Query Frame = -3
Query:  347 MGLSDKDIVALSGGHTLGRAHPERSGFDGPWTREPLKFDNSYFVELLNGESEGLLQLPTDKALLEDPEFRRYVELYAKDEDAFFRDYAASHKKLSELGFS 646
            MGLSD+DIVALSGGHT+G AH ERSGF+GPWT  PL FDNSYF ELL GE +GLLQLP+DKALL D  FR  VE YA DED FF DYA +H KLSELGF+
Sbjct:  149 MGLSDQDIVALSGGHTIGAAHKERSGFEGPWTSNPLIFDNSYFTELLTGEKDGLLQLPSDKALLTDSVFRPLVEKYAADEDVFFADYAEAHLKLSELGFA 248          
The following BLAST results are available for this feature:
BLAST of CN188178 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 41
Match NameE-valueIdentityDescription
APX3_ARATH1.497e-5676.76L-ascorbate peroxidase 3, peroxisomal OS=Arabidops... [more]
APX4_ORYSJ9.399e-5169.86Probable L-ascorbate peroxidase 4 OS=Oryza sativa ... [more]
APX3_ORYSJ3.129e-4686.14Probable L-ascorbate peroxidase 3 OS=Oryza sativa ... [more]
APX3_ORYSI3.129e-4686.14Probable L-ascorbate peroxidase 3 OS=Oryza sativa ... [more]
APX5_ARATH3.030e-4178.22L-ascorbate peroxidase 5, peroxisomal OS=Arabidops... [more]
APX1_ORYSJ6.319e-3976.00L-ascorbate peroxidase 1, cytosolic OS=Oryza sativ... [more]
APX2_ORYSJ3.136e-3876.00L-ascorbate peroxidase 2, cytosolic OS=Oryza sativ... [more]
APX1_ORYSI5.349e-3875.00L-ascorbate peroxidase 1, cytosolic OS=Oryza sativ... [more]
APX2_ARATH9.124e-3875.00L-ascorbate peroxidase 2, cytosolic OS=Arabidopsis... [more]
APX1_PEA7.724e-3774.00L-ascorbate peroxidase, cytosolic OS=Pisum sativum... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005J24_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005J24, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188178 ID=CN188178; Name=CN188178; organism=Citrus sinensis; type=EST; length=648bp
GCAGTCTCAAAACGACATTGTTTTATTGAATTTTCGGGGCTTGACCCGGG
GTTTGACCCGGGGTAAATAGCAGCACTCATAAACTTATCTAATTGCCCAG
CGTACTATCAGGAATAATAAGAACTTGGCAGCGCTTGGGGCTGGCGAGTT
CTGGCTAAATTCACTTGCAAATAACTGATGGTATATGTAACCAAATACAA
ATTTGAGTAATCTTGTTTCACTTCATCCTTTTGCGAACTTCGTAAAAGTA
GCTTAGAATCACCACTGCCACAGTAACTGCTACTCCAACTGCACCTTGAG
CTAATATGGTGCAATCATTTGCTGTTGATTTGGAGCCAGAACCGGGTGAA
AACCCTAGCTCTGAAAGTTTCTTATGTGATGCTGCATAATCTCTAAAGAA
TGCATCCTCATCCTTTGCATACAACTCAACATAACGACGGAACTCAGGGT
CTTCTAATAAAGCCTTGTCTGTTGGAAGTTGCAGTAATCCTTCTGATTCC
CCATTCAGCAACTCCACAAAGTATGAGTTATCAAATTTCAGAGGCTCCCT
GGTCCAAGGGCCGTCAAAACCTGATCTCTCTGGATGTGCCCTTCCCAAAG
TATGGCCCCCTGAGAGTGCCACTATATCCTTGTCAGACAGACCCATCC
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