CN188176

Overview
NameCN188176
Unique NameCN188176
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length666
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10980 contig Csv1_Contig10980:340..1005. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188176 vs. ExPASy Swiss-Prot
Match: HS235_ARATH (23.5 kDa heat shock protein, mitochondrial OS=Arabidopsis thaliana GN=HSP23.5 PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 1.920e-38
Identity = 82/134 (61.19%), Postives = 103/134 (76.87%), Query Frame = -2
Query:  189 TRSLSQVLNFMDQMTENPFFSGTRG----GLRRGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRXXXXXXXXXXESV--RRYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVPKVKEEERADVFQVKVD 572
            TRSLSQ+LNFMDQ++E P  S TRG    G+RRGW+ KE DDAL+L IDMPGL +EDV+++LEQNTLVIR           S   RR+TSRI+LPEK+Y+TD+IKAEMKNGVLKV +PK+KE+ER ++  + VD
Sbjct:   77 TRSLSQMLNFMDQVSEIPLVSATRGMGASGVRRGWNVKEKDDALHLRIDMPGLSREDVKLALEQNTLVIRGEGETEEGEDVSGDGRRFTSRIELPEKVYKTDEIKAEMKNGVLKVVIPKIKEDERNNIRHINVD 210          
BLAST of CN188176 vs. ExPASy Swiss-Prot
Match: HS23C_CHERU (Small heat shock protein, chloroplastic OS=Chenopodium rubrum GN=HSP23 PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 3.620e-37
Identity = 77/131 (58.78%), Postives = 97/131 (74.05%), Query Frame = -2
Query:  189 TRSLSQVLNFMDQMTENPFFSGTRGG---LRRGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRXXXXXXXXXXESVRRYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVPKVKEEERADVFQVKVD 572
            TRS+ Q++N MDQ+ ENPF + +RG    +RRGWD +E ++AL L +DMPGL KEDV+VS+E NTL+I+          E  RRY+SRI+L   LY+ D IKAEMKNGVLKVTVPK+KEEE+ DVFQV VD
Sbjct:   74 TRSVGQLMNLMDQLMENPFMAASRGSGRAMRRGWDVREDEEALELKVDMPGLAKEDVKVSVEDNTLIIKSEAEKETEEEEQRRRYSSRIELTPNLYKIDGIKAEMKNGVLKVTVPKIKEEEKKDVFQVMVD 204          
BLAST of CN188176 vs. ExPASy Swiss-Prot
Match: HS22M_PEA (Heat shock 22 kDa protein, mitochondrial OS=Pisum sativum GN=HSP22 PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.053e-36
Identity = 82/129 (63.57%), Postives = 98/129 (75.97%), Query Frame = -2
Query:  189 RSLSQVLNFMDQMTENPFFSGTRGGLRRGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRXXXXXXXXXXE--SVRRYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVPKVKEEERADVFQVKVD 569
            RSLSQVLN +D +T+NP  S      RRGWDA+ET+DAL L +DMPGLGKEDV++S+EQNTL I+          +  S RR++SRIDLPEKLY+ D IKAEMKNGVLKVTVPK+KEEER +V  VKVD
Sbjct:   77 RSLSQVLNMVDLLTDNPVLSAAS---RRGWDARETEDALFLRLDMPGLGKEDVKISVEQNTLTIKGEEGAKESEEKEKSGRRFSSRIDLPEKLYKIDVIKAEMKNGVLKVTVPKMKEEERNNVINVKVD 202          
BLAST of CN188176 vs. ExPASy Swiss-Prot
Match: HS23M_ARATH (23.6 kDa heat shock protein, mitochondrial OS=Arabidopsis thaliana GN=HSP23.6 PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.347e-36
Identity = 81/136 (59.56%), Postives = 99/136 (72.79%), Query Frame = -2
Query:  189 TRSLSQVLNFMDQMTENPFFSGTRG----GLRRGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRXXXXXXXXXXESV----RRYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVPKVKEEERADVFQVKVD 572
            TRS+SQVLN MDQ  ENP  S TRG    G RRGWD KE DDAL L IDMPGL +EDV+++LEQ+TLVIR          E      RR+TSRI LP+K+Y+ D+IKAEMKNGVLKV +PK+KE+ER DV Q++++
Sbjct:   75 TRSVSQVLNLMDQFMENPLLSATRGMGASGARRGWDIKEKDDALYLRIDMPGLSREDVKLALEQDTLVIRGEGKNEEDGGEEGESGNRRFTSRIGLPDKIYKIDEIKAEMKNGVLKVVIPKMKEQERNDVRQIEIN 210          
BLAST of CN188176 vs. ExPASy Swiss-Prot
Match: HS22M_SOYBN (Heat shock 22 kDa protein, mitochondrial OS=Glycine max GN=HSP23.9 PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 8.135e-35
Identity = 68/100 (68.00%), Postives = 82/100 (82.00%), Query Frame = -2
Query:  189 RGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRXXXXXXXXXXESVRRYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVPKVKEEERADVFQVKVD 488
            RGWDA+ET+DAL+L +DMPGL KEDV++S+EQNTL+I+          ES RRYTSRIDLP+KLY+ DQI+AEMKNGVLKV VPK+KEEER DV  VKV+
Sbjct:  112 RGWDARETEDALHLRVDMPGLAKEDVKISVEQNTLIIKGEGAKEGDEEESARRYTSRIDLPDKLYKIDQIRAEMKNGVLKVVVPKMKEEERKDVISVKVE 211          

HSP 2 Score: 27.335 bits (59), Expect = 8.135e-35
Identity = 13/25 (52.00%), Postives = 16/25 (64.00%), Query Frame = -1
Query:  520 CV*SIFTNKEPEPGPELHGSDDGES 594
            CV SIF++ E EPG E  G   G+S
Sbjct:   72 CVGSIFSDSEFEPGSEHDGPGHGQS 96          
BLAST of CN188176 vs. ExPASy Swiss-Prot
Match: HS24M_ORYSJ (24.1 kDa heat shock protein, mitochondrial OS=Oryza sativa subsp. japonica GN=HSP24.1 PE=2 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.072e-28
Identity = 69/129 (53.49%), Postives = 89/129 (68.99%), Query Frame = -2
Query:  189 RSLSQVLNFMDQMTENPFFSGTRGGLRRGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRXXXXXXXXXXESVR--RYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVPKVKEEERADVFQVKVD 569
            +SL ++L+ MD +   P        LRRGW+AKE+++AL+L +DMPGLGKE V+V  EQN+LVI+          E     RY+ RI+L  ++YR DQIKAEMKNGVLKV VPKVKEE+R DVFQV V+
Sbjct:   93 QSLGRLLSLMDDLA-TPAGRAGAATLRRGWNAKESEEALHLRVDMPGLGKEHVKVWAEQNSLVIKGEGEKEAGEDEGAAPARYSGRIELAPEVYRMDQIKAEMKNGVLKVVVPKVKEEQRRDVFQVNVE 220          
BLAST of CN188176 vs. ExPASy Swiss-Prot
Match: HS26M_ORYSJ (26.2 kDa heat shock protein, mitochondrial OS=Oryza sativa subsp. japonica GN=HSP26.2 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.336e-23
Identity = 67/135 (49.63%), Postives = 82/135 (60.74%), Query Frame = -2
Query:  189 SLSQVLNFM-DQMTENPFFSGTRG----GLRRG--WDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVIRXXXXXXXXXXESVR--RYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVPKVKEEERADVFQVKVD 566
            SL ++L  M D         GT G      RRG  W AKE DDA++L + MPGLGKE V+V  EQN+LVI+                RYT RI+LP   ++ D+IKAEMKNGVL+V VPK+KEEER DVFQV V+
Sbjct:  114 SLGRLLALMEDAAVATAAAPGTNGLATAAARRGGWWVAKEDDDAVHLKVSMPGLGKEHVKVWAEQNSLVIKGEGEKDPEDDADAAPPRYTRRIELPADAFKMDKIKAEMKNGVLRVAVPKLKEEERKDVFQVNVE 248          
BLAST of CN188176 vs. ExPASy Swiss-Prot
Match: HS25P_ARATH (25.3 kDa heat shock protein, chloroplastic OS=Arabidopsis thaliana GN=HSP25.3 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.440e-17
Identity = 53/136 (38.97%), Postives = 78/136 (57.35%), Query Frame = -2
Query:  195 RSLSQVLNFMDQMTEN--PFFSGTRGG-----LRRGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVI----RXXXXXXXXXXESVRRYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVPKVKEEERADVFQVK 569
            R++ Q+L+ MD+M E+  P     RGG     +R  WD KE +  + +  DMPGL KEDV++S+E N LVI    +           SV  Y +R+ LP+   + D+IKAE+KNGVL +T+PK K E +    Q++
Sbjct:   93 RTMRQMLDTMDRMFEDTMPVSGRNRGGSGVSEIRAPWDIKEEEHEIKMRFDMPGLSKEDVKISVEDNVLVIKGEQKKEDSDDSWSGRSVSSYGTRLQLPDNCEK-DKIKAELKNGVLFITIPKTKVERKVIDVQIQ 227          
BLAST of CN188176 vs. ExPASy Swiss-Prot
Match: HS22C_SOYBN (Small heat shock protein, chloroplastic (Fragment) OS=Glycine max GN=HSP22 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.982e-15
Identity = 52/136 (38.24%), Postives = 78/136 (57.35%), Query Frame = -2
Query:  195 RSLSQVLNFMDQMTENPF-FSGTR---GGLRRGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVI----RXXXXXXXXXXESVRRYTS---RIDLPEKLYRTDQIKAEMKNGVLKVTVPKVKEEERADVFQVK 569
            RS+ Q+L+ MD++ E+   F G     G +R  WD K+ +  + +  DMPGL KEDV+VS+E + LVI    +           S R Y+S   R+ LP+   + D++KAE+KNGVL +T+PK K E +    QV+
Sbjct:   47 RSMRQILDTMDRVFEDTMTFPGRNIGGGEIRAPWDIKDEEHEIRMRFDMPGLAKEDVKVSVEDDMLVIKGGHKSEQEHGGDDSWSSRTYSSYDTRLKLPDNCEK-DKVKAELKNGVLYITIPKTKVERKVIDVQVQ 181          
BLAST of CN188176 vs. ExPASy Swiss-Prot
Match: HS22C_PETHY (Small heat shock protein, chloroplastic OS=Petunia hybrida GN=HSP22 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.982e-15
Identity = 45/135 (33.33%), Postives = 81/135 (60.00%), Query Frame = -2
Query:  195 RSLSQVLNFMDQMTENPF-FSGTR----GGLRRGWDAKETDDALNLSIDMPGLGKEDVRVSLEQNTLVI-----RXXXXXXXXXXESVRRYTSRIDLPEKLYRTDQIKAEMKNGVLKVTVPKVKEEERADVFQVK 569
            R++ Q+++ MD++ E+   F G+R    G +R  WD K+ ++ + +  DMPGL KE+V+VS+E + LVI     +           +   Y +R+ LP+ + + D++KAE+KNGVL +++PK K E++    ++K
Sbjct:  108 RTMRQMMDTMDRLFEDTMTFPGSRNRGTGEIRAPWDIKDDENEIKMRFDMPGLSKEEVKVSVEDDVLVIKGEHKKEESGKDDSWGRNYSSYDTRLSLPDNVDK-DKVKAELKNGVLLISIPKTKVEKKVTDVEIK 241          
The following BLAST results are available for this feature:
BLAST of CN188176 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
HS235_ARATH1.920e-3861.1923.5 kDa heat shock protein, mitochondrial OS=Arab... [more]
HS23C_CHERU3.620e-3758.78Small heat shock protein, chloroplastic OS=Chenopo... [more]
HS22M_PEA1.053e-3663.57Heat shock 22 kDa protein, mitochondrial OS=Pisum ... [more]
HS23M_ARATH2.347e-3659.5623.6 kDa heat shock protein, mitochondrial OS=Arab... [more]
HS22M_SOYBN8.135e-3568.00Heat shock 22 kDa protein, mitochondrial OS=Glycin... [more]
HS24M_ORYSJ3.072e-2853.4924.1 kDa heat shock protein, mitochondrial OS=Oryz... [more]
HS26M_ORYSJ1.336e-2349.6326.2 kDa heat shock protein, mitochondrial OS=Oryz... [more]
HS25P_ARATH2.440e-1738.9725.3 kDa heat shock protein, chloroplastic OS=Arab... [more]
HS22C_SOYBN2.982e-1538.24Small heat shock protein, chloroplastic (Fragment)... [more]
HS22C_PETHY2.982e-1533.33Small heat shock protein, chloroplastic OS=Petunia... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS05_0005J23_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005J23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188176 ID=CN188176; Name=CN188176; organism=Citrus sinensis; type=EST; length=666bp
TTTTTTTTTTTTTTTTTACCCAACAAAACTAAGTAAACTCCTTTTATATG
CGAAGTAACACAATTATTCAAACTTCGAACACCACCATTTCAGAACATGT
TTGTAACTGTTAGCCCACATAAACTACACAAAATTATTCTCACTCAATAT
CCTGGACAGAAAAGCTACTACTAAAAGCCAACTCTTTAATCAACCTTCAC
TTGGAACACATCAGCCCTCTCCTCTTCCTTCACCTTGGGCACCGTCACTT
TCAGCACACCATTCTTCATCTCAGCCTTGATCTGATCAGTCCTGTAGAGC
TTCTCTGGCAAATCAATCCTGCTGGTGTACCTACGCACGCTCTCTTCGTC
CTCTCCTTCTTTTCCGCCCTCGCCTCTGATCACCAGCGTGTTCTGCTCCA
GAGAGACTCTCACGTCTTCCTTGCCCAGCCCTGGCATGTCGATGCTGAGG
TTCAACGCATCATCGGTTTCTTTAGCATCCCAGCCTCTGCGCAGTCCACC
ACGTGTGCCGCTGAAGAAAGGATTCTCCGTCATCTGATCCATGAAGTTCA
GGACCTGGCTCAGGCTCCTTGTTGGTGAAAATGGATCAAACACATCTGAG
AAGAAGTCGTCACGACGGCGAGGGAAAGAGCGAGCGGAACGGCGATCAAT
GTCGAGATCACGGTCG
back to top