EY666010

Overview
NameEY666010
Unique NameEY666010
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1126
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY666010_ssr1025 microsatellite EY666010_ssr1025:1025..1034. BLAST: Citrus ESTs to SwissProt
EY666010_ssr929 microsatellite EY666010_ssr929:929..943. BLAST: Citrus ESTs to SwissProt
Csv1_Contig8030 contig Csv1_Contig8030:1..1126. BLAST: Citrus Unigene V1 Contigs to SwissProt
Homology
BLAST of EY666010 vs. ExPASy Swiss-Prot
Match: VANX_ENTFC (D-alanyl-D-alanine dipeptidase OS=Enterococcus faecium GN=vanX PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.389e-15
Identity = 44/122 (36.07%), Postives = 71/122 (58.20%), Query Frame = -2
Query:   55 MPANMVYLRSLDPSIAQDIRYASPHNFTGAPLDGYNAAECVLSADAAKALVRVQAELARQGYGLKVFDCYRPSRAVANMGRFASLP-GDPAKAEFYPRVNKQDFWRLGYVAKVSNHSRGAAV 417
            M     +L  +   +  D +YA+  NFTG P+DGY     V + + A++L++ +   A QGYGL ++D YRP RAV    ++A+ P  +  K  +YP +++ +    GYVA  S+HSRG+A+
Sbjct:    1 MEIGFTFLDEIVHGVRWDAKYATWDNFTGKPVDGYEVNRIVGTYELAESLLKAKELAATQGYGLLLWDGYRPKRAVNCFMQWAAQPENNLTKESYYPNIDRTEMISKGYVASKSSHSRGSAI 122          
BLAST of EY666010 vs. ExPASy Swiss-Prot
Match: VANX_STRCO (D-alanyl-D-alanine dipeptidase OS=Streptomyces coelicolor GN=vanX PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.005e-14
Identity = 48/122 (39.34%), Postives = 64/122 (52.46%), Query Frame = -2
Query:   55 MPANMVYLRSLDPSIAQDIRYASPHNFTGAPLDGYNAAECVLSADAAKALVRVQAELARQGYGLKVFDCYRPSRAVANMGRFASLPGD-PAKAEFYPRVNKQDFWRLGYVAKVSNHSRGAAV 417
            M  +  ++  L   I  D +YA+  NFTG P+DGY A   V +     AL R Q      G+GL ++D YRP RAV    R++  P D   KA  YP + + + +  GYVA  S HSRGA V
Sbjct:    1 MTGDFAFVDELVSGIRWDAKYATWDNFTGKPVDGYLANRIVGTKALCAALGRAQERAEDLGFGLLLWDGYRPQRAVDCFLRWSQQPEDGRTKARHYPNIGRAEMFDRGYVAARSGHSRGATV 122          
BLAST of EY666010 vs. ExPASy Swiss-Prot
Match: VANX_ENTFA (D-alanyl-D-alanine dipeptidase OS=Enterococcus faecalis GN=vanXB PE=2 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 4.467e-14
Identity = 44/122 (36.07%), Postives = 65/122 (53.28%), Query Frame = -2
Query:   55 MPANMVYLRSLDPSIAQDIRYASPHNFTGAPLDGYNAAECVLSADAAKALVRVQAELARQGYGLKVFDCYRPSRAVANMGRFASLPGDP-AKAEFYPRVNKQDFWRLGYVAKVSNHSRGAAV 417
            M    ++L  +   +  D +YA+  NFTG P+DGY     + +   A AL   Q   A  GYGL ++D YRP  AV    R+A+ P D   K ++YP + + +    GYVA  S+HSRG+ +
Sbjct:    1 MENGFLFLDEMLHGVRWDAKYATWDNFTGKPVDGYEVNRIIGTKAVALALREAQIHAAALGYGLLLWDGYRPKSAVDCFLRWAAQPEDNLTKEKYYPNIERAELITKGYVASQSSHSRGSTI 122          
The following BLAST results are available for this feature:
BLAST of EY666010 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
VANX_ENTFC1.389e-1536.07D-alanyl-D-alanine dipeptidase OS=Enterococcus fae... [more]
VANX_STRCO2.005e-1439.34D-alanyl-D-alanine dipeptidase OS=Streptomyces coe... [more]
VANX_ENTFA4.467e-1436.07D-alanyl-D-alanine dipeptidase OS=Enterococcus fae... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-102-011-F12-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY666010 ID=EY666010; Name=EY666010; organism=Citrus sinensis; type=EST; length=1126bp
ACACCCCGCCACACACACCCCCACCCTGCAGGTACGGTCCGCGAATCCCG
GGCCGACTGCCGCGCCTCGGGAGTGATTGGAAACCTTGGCCACATAGCCC
AGGCGCCAGAAATCCTGCTTGTTCACTCGGGGATAAAACTCGGCCTTGGC
CGGGTCGCCCGGCAGGCTGGCGAAGCGGCCCATGTTCGCCACGGCACGGC
TGGGGCGATAGCAGTCGAATACCTTCAAGCCGTAACCCTGCCTGGCCAAC
TCGGCCTGGACCCGCACCAGGGCCTTTGCCGCGTCGGCAGACAGCACGCA
TTCGGCAGCGTTGTAGCCGTCCAGTGGCGCACCGGTGAAGTTATGGGGGC
TGGCGTAGCGAATGTCCTGCGCGATGCTCGGATCGAGGCTTCGCAGGTAA
ACCATGTTGGCTGGCATTGGCGTGTCTGCCGCTGCCGGCGCGGCGAGCAC
CAGGAGGCTAAGGGCGGCAACTGCGGGCAAACACTACGGCATGGGCGCCC
GCCCCCCACCCGGCGCCGCCGGGCACCGCCCAGCCCGCCCCCCCCGCCGC
GCAGCCCCCCCCCACCCGGCCCCGCGCCCCGACGCGCAGTGGGCAGGGAC
CAAGCGGCGAGCACCGGACCGGGCGCCCAGCACCACCCCAACAACCACGC
ACGCAGCGCACCACACCCCCGCCACCACGCTCACCACACAGCGACAAAAC
ACCGAGGCCGACGGGAGCGGGGCCACCACCGGCGCCCCAAAGCCGACCAA
CGAGGCACCGCGACAGGCGCGAGGCGCTTCAGCGCCGCCCCCTCCGACGC
CGACGCCCACAACCCACACAACCCCCCGCGACACCGCGTGTGACGTCGCC
CAACAGCAGCACAGCTCCGATATCAACGAAGCAACTCAACCAGACGGCCA
CAGCGGCAAGACGAGCAGCGAGGCACAGACGCCACGCCACGCCGTCAGCG
CACCCACCGCAATCGACGGACGCGCCAGACCAAGGGCCCACTANCAGACG
CACAGAGCCATCCACAAATCTCACCACACACACAAGCAACACACGCCCGG
GCACAGCGCGGCGCACATCCGGGGTGACCCGCACCGACCCCCAACCAACT
ACCTAGACAAAACAACAACCAACAGC
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