CN188173

Overview
NameCN188173
Unique NameCN188173
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length694
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2644 contig Csv1_Contig2644:1..694. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188173 vs. ExPASy Swiss-Prot
Match: AHM7_ARATH (Putative copper-transporting ATPase 3 OS=Arabidopsis thaliana GN=HMA5 PE=2 SV=2)

HSP 1 Score: 421.394 bits (1082), Expect = 2.247e-117
Identity = 211/230 (91.74%), Postives = 221/230 (96.09%), Query Frame = 3
Query:    3 SSDGYVLWGQSHVYESMITGEARPVAKRKGYTVIGGTVNENGVLHIKATRVGSESALAQIVRLVESAQMAKAPVQKFADRISKYFVPLVIILSFSTWLAWFLAGKFHSYPESWIPSSMDSFQLALQFGISVMVIACPCALGLATPTAVMVGTGVGASQGVLIKGGQALESAHKVNCIVFDKTGTLTVGKPVVVSTKLLKNMVLRDFYEVVAATEVNSEHPLAKAIVEYAK 692
            +SDGYV+WGQSHV ESMITGEARPVAKRKG TVIGGT+NENGVLH+K TRVGSESALAQIVRLVESAQ+AKAPVQK ADRISK+FVPLVI LSFSTWLAWFLAGK H YPESWIPSSMDSF+LALQFGISVMVIACPCALGLATPTAVMVGTGVGASQGVLIKGGQALE AHKVNCIVFDKTGTLT+GKPVVV TKLLKNMVLR+FYE+VAATEVNSEHPLAKAIVEYAK
Sbjct:  482 ASDGYVIWGQSHVNESMITGEARPVAKRKGDTVIGGTLNENGVLHVKVTRVGSESALAQIVRLVESAQLAKAPVQKLADRISKFFVPLVIFLSFSTWLAWFLAGKLHWYPESWIPSSMDSFELALQFGISVMVIACPCALGLATPTAVMVGTGVGASQGVLIKGGQALERAHKVNCIVFDKTGTLTMGKPVVVKTKLLKNMVLREFYELVAATEVNSEHPLAKAIVEYAK 711          
BLAST of CN188173 vs. ExPASy Swiss-Prot
Match: AHM5_ARATH (Copper-transporting ATPase RAN1 OS=Arabidopsis thaliana GN=RAN1 PE=1 SV=1)

HSP 1 Score: 276.174 bits (705), Expect = 1.167e-73
Identity = 134/229 (58.52%), Postives = 173/229 (75.55%), Query Frame = 3
Query:    6 SDGYVLWGQSHVYESMITGEARPVAKRKGYTVIGGTVNENGVLHIKATRVGSESALAQIVRLVESAQMAKAPVQKFADRISKYFVPLVIILSFSTWLAWFLAGKFHSYPESWIPSSMDSFQLALQFGISVMVIACPCALGLATPTAVMVGTGVGASQGVLIKGGQALESAHKVNCIVFDKTGTLTVGKPVVVSTKLLKNMVLRDFYEVVAATEVNSEHPLAKAIVEYAK 692
            +DG V+WG S+V ESM+TGE+ PV+K     VIGGT+N +G LH+KAT+VGS++ L+QI+ LVE+AQM+KAP+QKFAD ++  FVP+VI L+  T + W + G   +YP+ W+P +   F  +L F ISV+VIACPCALGLATPTAVMV TGVGA+ GVLIKGG ALE AHKV  ++FDKTGTLT GK  V +TK+   M   +F  +VA+ E +SEHPLAKAIV YA+
Sbjct:  480 ADGVVVWGSSYVNESMVTGESVPVSKEVDSPVIGGTINMHGALHMKATKVGSDAVLSQIISLVETAQMSKAPIQKFADYVASIFVPVVITLALFTLVGWSIGGAVGAYPDEWLPENGTHFVFSLMFSISVVVIACPCALGLATPTAVMVATGVGATNGVLIKGGDALEKAHKVKYVIFDKTGTLTQGKATVTTTKVFSEMDRGEFLTLVASAEASSEHPLAKAIVAYAR 708          
BLAST of CN188173 vs. ExPASy Swiss-Prot
Match: ATP7A_RAT (Copper-transporting ATPase 1 OS=Rattus norvegicus GN=Atp7a PE=1 SV=1)

HSP 1 Score: 234.572 bits (597), Expect = 3.895e-61
Identity = 126/240 (52.50%), Postives = 166/240 (69.17%), Query Frame = 3
Query:    9 DGYVLWGQSHVYESMITGEARPVAKRKGYTVIGGTVNENGVLHIKATRVGSESALAQIVRLVESAQMAKAPVQKFADRISKYFVPLVIILSFSTWLAWFLAGKFHSYP--ESWIPSSMDS-------FQLALQFGISVMVIACPCALGLATPTAVMVGTGVGASQGVLIKGGQALESAHKVNCIVFDKTGTLTVGKPVVVSTKLL--KNMVLRD-FYEVVAATEVNSEHPLAKAIVEYAK 692
            DG V+ G S V ES+ITGEA PVAK+ G TVI G++N+NG L I+AT VG+++ L+QIV+LVE AQ +KAP+Q+FAD++S YFVP ++++S  T L W + G F ++   E++ P    S        + A Q  I+V+ IACPC+LGLATPTAVMVGTGVGA  G+LIKGG+ LE AHKV  +VFDKTGT+T G PVV   K+L   N + R+    +V   E NSEHPL  A+ +Y K
Sbjct:  851 DGRVIEGHSMVDESLITGEAMPVAKKPGSTVIAGSINQNGSLLIRATHVGADTTLSQIVKLVEEAQTSKAPIQQFADKLSGYFVPFIVLVSIVTLLVWIIIG-FQNFEIVEAYFPGYNRSISRTETIIRFAFQASITVLCIACPCSLGLATPTAVMVGTGVGAQNGILIKGGEPLEMAHKVKVVVFDKTGTITHGTPVVNQVKVLVESNKISRNKILAIVGTAESNSEHPLGAAVTKYCK 1089          
BLAST of CN188173 vs. ExPASy Swiss-Prot
Match: ATP7A_MOUSE (Copper-transporting ATPase 1 OS=Mus musculus GN=Atp7a PE=1 SV=2)

HSP 1 Score: 234.572 bits (597), Expect = 3.895e-61
Identity = 126/240 (52.50%), Postives = 166/240 (69.17%), Query Frame = 3
Query:    9 DGYVLWGQSHVYESMITGEARPVAKRKGYTVIGGTVNENGVLHIKATRVGSESALAQIVRLVESAQMAKAPVQKFADRISKYFVPLVIILSFSTWLAWFLAGKFHSYP--ESWIPSSMDS-------FQLALQFGISVMVIACPCALGLATPTAVMVGTGVGASQGVLIKGGQALESAHKVNCIVFDKTGTLTVGKPVVVSTKLL--KNMVLRD-FYEVVAATEVNSEHPLAKAIVEYAK 692
            DG V+ G S V ES+ITGEA PVAK+ G TVI G++N+NG L I+AT VG+++ L+QIV+LVE AQ +KAP+Q+FAD++S YFVP ++++S  T L W + G F ++   E++ P    S        + A Q  I+V+ IACPC+LGLATPTAVMVGTGVGA  G+LIKGG+ LE AHKV  +VFDKTGT+T G PVV   K+L   N + R+    +V   E NSEHPL  A+ +Y K
Sbjct:  850 DGRVIEGHSMVDESLITGEAMPVAKKPGSTVIAGSINQNGSLLIRATHVGADTTLSQIVKLVEEAQTSKAPIQQFADKLSGYFVPFIVLVSIVTLLVWIIIG-FQNFEIVETYFPGYNRSISRTETIIRFAFQASITVLCIACPCSLGLATPTAVMVGTGVGAQNGILIKGGEPLEMAHKVKVVVFDKTGTITHGTPVVNQVKVLVESNKISRNKILAIVGTAESNSEHPLGAAVTKYCK 1088          
BLAST of CN188173 vs. ExPASy Swiss-Prot
Match: ATP7A_CRIGR (Copper-transporting ATPase 1 (Fragment) OS=Cricetulus griseus GN=ATP7A PE=2 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 2.525e-60
Identity = 125/240 (52.08%), Postives = 164/240 (68.33%), Query Frame = 3
Query:    9 DGYVLWGQSHVYESMITGEARPVAKRKGYTVIGGTVNENGVLHIKATRVGSESALAQIVRLVESAQMAKAPVQKFADRISKYFVPLVIILSFSTWLAWFLAGKFHSYP--ESWIPSSMDS-------FQLALQFGISVMVIACPCALGLATPTAVMVGTGVGASQGVLIKGGQALESAHKVNCIVFDKTGTLTVGKPVVVSTKLL--KNMVLRD-FYEVVAATEVNSEHPLAKAIVEYAK 692
            DG V+ G S V ES+ITGEA PVAK+ G TVI G++N+NG L I AT VG+++ L+QIV+LVE AQ +KAP+Q+FAD++  YFVP ++++S +T L W + G F ++   E++ P    S        + A Q  I+V+ IACPC+LGLATPTAVMVGTGVGA  G+LIKGG+ LE AHKV  +VFDKTGT+T G PVV   K+L   N + R     +V   E NSEHPL  A+ +Y K
Sbjct:  849 DGRVIEGHSMVDESLITGEAMPVAKKPGSTVIAGSINQNGSLLICATHVGADTTLSQIVKLVEEAQTSKAPIQQFADKLGGYFVPFIVLVSIATLLVWIIIG-FQNFTIVETYFPGYSRSISRTETIIRFAFQASITVLCIACPCSLGLATPTAVMVGTGVGAQNGILIKGGEPLEMAHKVKVVVFDKTGTITHGTPVVNQVKVLVESNKIPRSKILAIVGTAESNSEHPLGAAVTKYCK 1087          
BLAST of CN188173 vs. ExPASy Swiss-Prot
Match: ATP7A_HUMAN (Copper-transporting ATPase 1 OS=Homo sapiens GN=ATP7A PE=1 SV=3)

HSP 1 Score: 230.335 bits (586), Expect = 7.346e-60
Identity = 124/239 (51.88%), Postives = 160/239 (66.95%), Query Frame = 3
Query:    9 DGYVLWGQSHVYESMITGEARPVAKRKGYTVIGGTVNENGVLHIKATRVGSESALAQIVRLVESAQMAKAPVQKFADRISKYFVPLVIILSFSTWLAWFLAGKFH-SYPESWIPSSMDS-------FQLALQFGISVMVIACPCALGLATPTAVMVGTGVGASQGVLIKGGQALESAHKVNCIVFDKTGTLTVGKPVVVSTKLL---KNMVLRDFYEVVAATEVNSEHPLAKAIVEYAK 692
            DG V+ G S V ES+ITGEA PVAK+ G TVI G++N+NG L I AT VG+++ L+QIV+LVE AQ +KAP+Q+FAD++S YFVP ++ +S +T L W + G  +    E++ P    S        + A Q  I+V+ IACPC+LGLATPTAVMVGTGVGA  G+LIKGG+ LE AHKV  +VFDKTGT+T G PVV   K+L     +       +V   E NSEHPL  AI +Y K
Sbjct:  859 DGRVIEGHSMVDESLITGEAMPVAKKPGSTVIAGSINQNGSLLICATHVGADTTLSQIVKLVEEAQTSKAPIQQFADKLSGYFVPFIVFVSIATLLVWIVIGFLNFEIVETYFPGYNRSISRTETIIRFAFQASITVLCIACPCSLGLATPTAVMVGTGVGAQNGILIKGGEPLEMAHKVKVVVFDKTGTITHGTPVVNQVKVLTESNRISHHKILAIVGTAESNSEHPLGTAITKYCK 1097          
BLAST of CN188173 vs. ExPASy Swiss-Prot
Match: ATP7B_HUMAN (Copper-transporting ATPase 2 OS=Homo sapiens GN=ATP7B PE=1 SV=4)

HSP 1 Score: 224.172 bits (570), Expect = 5.264e-58
Identity = 120/239 (50.21%), Postives = 157/239 (65.69%), Query Frame = 3
Query:    9 DGYVLWGQSHVYESMITGEARPVAKRKGYTVIGGTVNENGVLHIKATRVGSESALAQIVRLVESAQMAKAPVQKFADRISKYFVPLVIILSFSTWLAWFLAG--------KFHSYPESWIPSSMDSFQLALQFGISVMVIACPCALGLATPTAVMVGTGVGASQGVLIKGGQALESAHKVNCIVFDKTGTLTVGKPVVVSTKLLKNMV---LRDFYEVVAATEVNSEHPLAKAIVEYAK 692
            DG VL G +   ES+ITGEA PV K+ G TVI G++N +G + IKAT VG+++ LAQIV+LVE AQM+KAP+Q+ ADR S YFVP +II+S  T + W + G        ++   P   I  +    + A Q  I+V+ IACPC+LGLATPTAVMVGTGV A  G+LIKGG+ LE AHK+  ++FDKTGT+T G P V+   LL ++    LR    VV   E +SEHPL  A+ +Y K
Sbjct:  842 DGKVLEGNTMADESLITGEAMPVTKKPGSTVIAGSINAHGSVLIKATHVGNDTTLAQIVKLVEEAQMSKAPIQQLADRFSGYFVPFIIIMSTLTLVVWIVIGFIDFGVVQRYFPNPNKHISQTEVIIRFAFQTSITVLCIACPCSLGLATPTAVMVGTGVAAQNGILIKGGKPLEMAHKIKTVMFDKTGTITHGVPRVMRVLLLGDVATLPLRKVLAVVGTAEASSEHPLGVAVTKYCK 1080          
BLAST of CN188173 vs. ExPASy Swiss-Prot
Match: ATP7B_RAT (Copper-transporting ATPase 2 OS=Rattus norvegicus GN=Atp7b PE=2 SV=1)

HSP 1 Score: 223.016 bits (567), Expect = 1.173e-57
Identity = 121/239 (50.63%), Postives = 156/239 (65.27%), Query Frame = 3
Query:    9 DGYVLWGQSHVYESMITGEARPVAKRKGYTVIGGTVNENGVLHIKATRVGSESALAQIVRLVESAQMAKAPVQKFADRISKYFVPLVIILSFSTWLAWFLAG--------KFHSYPESWIPSSMDSFQLALQFGISVMVIACPCALGLATPTAVMVGTGVGASQGVLIKGGQALESAHKVNCIVFDKTGTLTVGKPVVVSTKLLKNMV---LRDFYEVVAATEVNSEHPLAKAIVEYAK 692
            DG VL G +   ES+ITGEA PV K+ G  VI G++N +G + IKAT VG+++ LAQIV+LVE AQM+KAP+Q+ ADR S YFVP +II+S  T + W + G        K+   P   I  +    + A Q  I+V+ IACPC+LGLATPTAVMVGTGV A  GVLIKGG+ LE AHK+  ++FDKTGT+T G P V+   LL ++    LR    VV   E +SEHPL  A+ +Y K
Sbjct:  835 DGKVLEGNTMADESLITGEAMPVTKKPGSIVIAGSINAHGSVLIKATHVGNDTTLAQIVKLVEEAQMSKAPIQQLADRFSGYFVPFIIIISTLTLVVWIIIGFVDFGIVQKYFPSPSKHISQTEVIIRFAFQTSITVLCIACPCSLGLATPTAVMVGTGVAAQNGVLIKGGKPLEMAHKIKTVMFDKTGTITHGVPRVMRFLLLVDVATLSLRKVLAVVGTAEASSEHPLGVAVTKYCK 1073          
BLAST of CN188173 vs. ExPASy Swiss-Prot
Match: ATP7B_MOUSE (Copper-transporting ATPase 2 OS=Mus musculus GN=Atp7b PE=1 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 2.000e-57
Identity = 120/239 (50.21%), Postives = 156/239 (65.27%), Query Frame = 3
Query:    9 DGYVLWGQSHVYESMITGEARPVAKRKGYTVIGGTVNENGVLHIKATRVGSESALAQIVRLVESAQMAKAPVQKFADRISKYFVPLVIILSFSTWLAWFLAG--------KFHSYPESWIPSSMDSFQLALQFGISVMVIACPCALGLATPTAVMVGTGVGASQGVLIKGGQALESAHKVNCIVFDKTGTLTVGKPVVVSTKLLKNMV---LRDFYEVVAATEVNSEHPLAKAIVEYAK 692
            DG VL G +   ES+ITGEA PV K+ G  VI G++N +G + +KAT VG+++ LAQIV+LVE AQM+KAP+Q+ ADR S YFVP +II+S  T + W + G        K+   P   I  +    + A Q  I+V+ IACPC+LGLATPTAVMVGTGV A  GVLIKGG+ LE AHK+  ++FDKTGT+T G P V+   LL ++    LR    VV   E +SEHPL  A+ +Y K
Sbjct:  844 DGKVLEGNTMADESLITGEAMPVTKKPGSIVIAGSINAHGSVLLKATHVGNDTTLAQIVKLVEEAQMSKAPIQQLADRFSGYFVPFIIIISTLTLVVWIVIGFVDFGVVQKYFPSPSKHISQTEVIIRFAFQTSITVLCIACPCSLGLATPTAVMVGTGVAAQNGVLIKGGKPLEMAHKIKTVMFDKTGTITHGVPRVMRFLLLADVATLPLRKVLAVVGTAEASSEHPLGVAVTKYCK 1082          
BLAST of CN188173 vs. ExPASy Swiss-Prot
Match: ATP7B_SHEEP (Copper-transporting ATPase 2 OS=Ovis aries GN=ATP7B PE=2 SV=1)

HSP 1 Score: 219.164 bits (557), Expect = 1.693e-56
Identity = 119/239 (49.79%), Postives = 153/239 (64.02%), Query Frame = 3
Query:    9 DGYVLWGQSHVYESMITGEARPVAKRKGYTVIGGTVNENGVLHIKATRVGSESALAQIVRLVESAQMAKAPVQKFADRISKYFVPLVIILSFSTWLAWFLAG--------KFHSYPESWIPSSMDSFQLALQFGISVMVIACPCALGLATPTAVMVGTGVGASQGVLIKGGQALESAHKVNCIVFDKTGTLTVGKPVVVSTKLLKNMV---LRDFYEVVAATEVNSEHPLAKAIVEYAK 692
            DG VL G +   ES+ITGEA PV K+ G  VI G++N +G + I AT VG+++ LAQIV+LVE AQM+KAP+Q+ ADR S YFVP +II+S  T + W + G        K+   P   I  +    + A Q  I+V+ IACPC+LGLATPTAVMVGTGV A  G+LIKGG+ LE AHK+  ++FDKTGT+T G P V    LL ++    LR    VV   E +SEHPL  A+  Y K
Sbjct:  882 DGKVLEGNTMADESLITGEAMPVTKKPGSMVIAGSMNAHGSVLITATHVGNDTTLAQIVKLVEEAQMSKAPIQQLADRFSGYFVPFIIIISTVTLVVWIVIGFIDFGVVQKYFPAPSKGISQAEVVLRFAFQTSITVLCIACPCSLGLATPTAVMVGTGVAAQNGILIKGGKPLEMAHKIKTVMFDKTGTITHGVPKVSRVLLLVDLATLPLRKVLAVVGTAEASSEHPLGVAVTRYCK 1120          
The following BLAST results are available for this feature:
BLAST of CN188173 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 153
Match NameE-valueIdentityDescription
AHM7_ARATH2.247e-11791.74Putative copper-transporting ATPase 3 OS=Arabidops... [more]
AHM5_ARATH1.167e-7358.52Copper-transporting ATPase RAN1 OS=Arabidopsis tha... [more]
ATP7A_RAT3.895e-6152.50Copper-transporting ATPase 1 OS=Rattus norvegicus ... [more]
ATP7A_MOUSE3.895e-6152.50Copper-transporting ATPase 1 OS=Mus musculus GN=At... [more]
ATP7A_CRIGR2.525e-6052.08Copper-transporting ATPase 1 (Fragment) OS=Cricetu... [more]
ATP7A_HUMAN7.346e-6051.88Copper-transporting ATPase 1 OS=Homo sapiens GN=AT... [more]
ATP7B_HUMAN5.264e-5850.21Copper-transporting ATPase 2 OS=Homo sapiens GN=AT... [more]
ATP7B_RAT1.173e-5750.63Copper-transporting ATPase 2 OS=Rattus norvegicus ... [more]
ATP7B_MOUSE2.000e-5750.21Copper-transporting ATPase 2 OS=Mus musculus GN=At... [more]
ATP7B_SHEEP1.693e-5649.79Copper-transporting ATPase 2 OS=Ovis aries GN=ATP7... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005J21_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005J21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188173 ID=CN188173; Name=CN188173; organism=Citrus sinensis; type=EST; length=694bp
AGTCTTCAGATGGTTACGTTTTGTGGGGACAGAGCCATGTCTATGAGAGT
ATGATAACTGGAGAGGCAAGGCCAGTGGCTAAGAGGAAGGGTTATACAGT
AATTGGTGGCACTGTGAATGAGAATGGGGTGCTACATATTAAGGCAACAA
GGGTTGGATCAGAGAGTGCTCTTGCTCAAATTGTTCGACTTGTTGAATCA
GCTCAGATGGCTAAGGCTCCAGTTCAGAAGTTCGCTGATCGTATTTCAAA
ATACTTTGTGCCTCTGGTCATCATCCTGTCATTTTCGACATGGCTTGCTT
GGTTTTTAGCTGGAAAGTTCCATAGCTACCCGGAATCCTGGATACCATCT
TCGATGGATAGCTTTCAGCTTGCACTACAGTTTGGAATCTCTGTTATGGT
CATAGCGTGTCCATGTGCGCTAGGCCTAGCGACTCCAACTGCTGTAATGG
TTGGAACTGGAGTTGGGGCATCTCAAGGAGTACTGATTAAAGGGGGTCAG
GCCTTGGAAAGTGCACATAAGGTGAATTGCATTGTGTTTGACAAAACTGG
AACTCTGACAGTTGGAAAGCCAGTAGTTGTCAGCACAAAGCTTTTGAAAA
ATATGGTACTGAGAGACTTCTATGAAGTTGTTGCTGCAACTGAGGTTAAC
AGTGAGCACCCATTGGCGAAGGCTATTGTTGAATATGCCAAGAA
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