CN188172

Overview
NameCN188172
Unique NameCN188172
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length588
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2734 contig Csv1_Contig2734:11..599. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188172 vs. ExPASy Swiss-Prot
Match: AHM7_ARATH (Putative copper-transporting ATPase 3 OS=Arabidopsis thaliana GN=HMA5 PE=2 SV=2)

HSP 1 Score: 190.274 bits (482), Expect = 6.171e-48
Identity = 99/117 (84.62%), Postives = 103/117 (88.03%), Query Frame = -1
Query:  238 LVAADVGMAIGAGTDIAIEAADIVLMKSNLEDVITAIDLSRKTFSRIRLNYIWALGYNLLGIPIAAGALFPTTGFRLPPWIAGAAMAAXXXXXXXXXXXLKNYKRPKKLNNLEIREI 588
            LVAADVGMAIGAGTDIAIEAADIVLMKSNLEDVITAIDLSRKTFSRIRLNY+WALGYNL+GIPIAAG LFP T FRLPPWIAGAAMAA           LKNYKRPKKL++LEIREI
Sbjct:  874 LVAADVGMAIGAGTDIAIEAADIVLMKSNLEDVITAIDLSRKTFSRIRLNYVWALGYNLMGIPIAAGVLFPGTRFRLPPWIAGAAMAASSVSVVCCSLLLKNYKRPKKLDHLEIREI 990          
BLAST of CN188172 vs. ExPASy Swiss-Prot
Match: AHM5_ARATH (Copper-transporting ATPase RAN1 OS=Arabidopsis thaliana GN=RAN1 PE=1 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 3.635e-32
Identity = 70/114 (61.40%), Postives = 84/114 (73.68%), Query Frame = -1
Query:  247 LVAADVGMAIGAGTDIAIEAADIVLMKSNLEDVITAIDLSRKTFSRIRLNYIWALGYNLLGIPIAAGALFPTTGFRLPPWIAGAAMAAXXXXXXXXXXXLKNYKRPKKLNNLEI 588
            L AADVGMAIGAGTD+AIEAAD VLM++NLEDVITAIDLSRKT +RIRLNY++A+ YN++ IPIAAG  FP    +LPPW AGA MA            L+ YK+P+    L+I
Sbjct:  885 LAAADVGMAIGAGTDVAIEAADYVLMRNNLEDVITAIDLSRKTLTRIRLNYVFAMAYNVVSIPIAAGVFFPVLRVQLPPWAAGACMALSSVSVVCSSLLLRRYKKPRLTTVLKI 998          
BLAST of CN188172 vs. ExPASy Swiss-Prot
Match: ATP7A_RAT (Copper-transporting ATPase 1 OS=Rattus norvegicus GN=Atp7a PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.252e-24
Identity = 61/115 (53.04%), Postives = 80/115 (69.57%), Query Frame = -1
Query:  244 LVAADVGMAIGAGTDIAIEAADIVLMKSNLEDVITAIDLSRKTFSRIRLNYIWALGYNLLGIPIAAGALFPTTGFRLPPWIAGAAMAAXXXXXXXXXXXLKNYKRPKKLNNLEIR 588
            L  A VG+AIG GTD+AIEAAD+VL++++L DV+ +IDLSRKT  RIR+N+++AL YNL+GIPIAAG   P  G  L PW+  AAMAA           LK Y++P   +N E+R
Sbjct: 1301 LAMASVGIAIGTGTDVAIEAADVVLIRNDLLDVVASIDLSRKTVKRIRINFVFALIYNLIGIPIAAGVFLP-IGLVLQPWMGSAAMAASSVSVVLSSLFLKLYRKP-TYDNYELR 1413          
BLAST of CN188172 vs. ExPASy Swiss-Prot
Match: ATP7A_MOUSE (Copper-transporting ATPase 1 OS=Mus musculus GN=Atp7a PE=1 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 3.643e-24
Identity = 58/106 (54.72%), Postives = 76/106 (71.70%), Query Frame = -1
Query:  271 LVAADVGMAIGAGTDIAIEAADIVLMKSNLEDVITAIDLSRKTFSRIRLNYIWALGYNLLGIPIAAGALFPTTGFRLPPWIAGAAMAAXXXXXXXXXXXLKNYKRP 588
            L  A+VG+AIG GTD+AIEAAD+VL++++L DV+ +IDLSRKT  RIR+N+++AL YNL+GIPIAAG   P  G  L PW+  AAMAA           LK Y++P
Sbjct: 1300 LAMANVGIAIGTGTDVAIEAADVVLIRNDLLDVVASIDLSRKTVKRIRINFVFALIYNLVGIPIAAGVFLP-IGLVLQPWMGSAAMAASSVSVVLSSLFLKLYRKP 1404          
BLAST of CN188172 vs. ExPASy Swiss-Prot
Match: ATP7A_HUMAN (Copper-transporting ATPase 1 OS=Homo sapiens GN=ATP7A PE=1 SV=3)

HSP 1 Score: 109.768 bits (273), Expect = 1.060e-23
Identity = 57/106 (53.77%), Postives = 76/106 (71.70%), Query Frame = -1
Query:  271 LVAADVGMAIGAGTDIAIEAADIVLMKSNLEDVITAIDLSRKTFSRIRLNYIWALGYNLLGIPIAAGALFPTTGFRLPPWIAGAAMAAXXXXXXXXXXXLKNYKRP 588
            L  A+VG+AIG GTD+AIEAAD+VL++++L DV+ +IDLSR+T  RIR+N+++AL YNL+GIPIAAG   P  G  L PW+  AAMAA           LK Y++P
Sbjct: 1309 LAMANVGIAIGTGTDVAIEAADVVLIRNDLLDVVASIDLSRETVKRIRINFVFALIYNLVGIPIAAGVFMP-IGLVLQPWMGSAAMAASSVSVVLSSLFLKLYRKP 1413          
BLAST of CN188172 vs. ExPASy Swiss-Prot
Match: ATP7B_SHEEP (Copper-transporting ATPase 2 OS=Ovis aries GN=ATP7B PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.531e-22
Identity = 57/106 (53.77%), Postives = 73/106 (68.87%), Query Frame = -1
Query:  271 LVAADVGMAIGAGTDIAIEAADIVLMKSNLEDVITAIDLSRKTFSRIRLNYIWALGYNLLGIPIAAGALFPTTGFRLPPWIAGAAMAAXXXXXXXXXXXLKNYKRP 588
            L  ADVG+AIG GTD+AIEAAD+VL++++L DV+ +I LSR+T  RIRLN + AL YNL+GIP+AAG   P  G  L PW+  AAMAA           LK Y++P
Sbjct: 1315 LAQADVGIAIGTGTDVAIEAADVVLIRNDLLDVVASIHLSRRTVWRIRLNLVLALIYNLIGIPVAAGVFIP-IGVVLQPWMGSAAMAASSVSVVLSSLQLKCYRKP 1419          
BLAST of CN188172 vs. ExPASy Swiss-Prot
Match: ATP7A_CRIGR (Copper-transporting ATPase 1 (Fragment) OS=Cricetulus griseus GN=ATP7A PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.531e-22
Identity = 57/115 (49.57%), Postives = 77/115 (66.96%), Query Frame = -1
Query:  244 LVAADVGMAIGAGTDIAIEAADIVLMKSNLEDVITAIDLSRKTFSRIRLNYIWALGYNLLGIPIAAGALFPTTGFRLPPWIAGAAMAAXXXXXXXXXXXLKNYKRPKKLNNLEIR 588
            L  A+VG+AIG GTD+ IEAAD+V ++++L DV+ +IDLSRKT  RIR+N+++ L YNL+GIPIAAG   P  G    PW+  AAMAA           LK Y++P   +N E+R
Sbjct: 1299 LAMANVGIAIGTGTDVTIEAADVVFIRNDLLDVVASIDLSRKTVKRIRINFLFPLIYNLVGIPIAAGVFLP-IGLVFQPWMGSAAMAASSVSVVLSSLFLKLYRKP-TYDNYELR 1411          
BLAST of CN188172 vs. ExPASy Swiss-Prot
Match: ATP7B_HUMAN (Copper-transporting ATPase 2 OS=Homo sapiens GN=ATP7B PE=1 SV=4)

HSP 1 Score: 105.145 bits (261), Expect = 2.611e-22
Identity = 56/106 (52.83%), Postives = 73/106 (68.87%), Query Frame = -1
Query:  271 LVAADVGMAIGAGTDIAIEAADIVLMKSNLEDVITAIDLSRKTFSRIRLNYIWALGYNLLGIPIAAGALFPTTGFRLPPWIAGAAMAAXXXXXXXXXXXLKNYKRP 588
            L  AD+G+AIG GTD+AIEAAD+VL++++L DV+ +I LS++T  RIR+N + AL YNL+GIPIAAG   P  G  L PW+  AAMAA           LK YK+P
Sbjct: 1275 LAQADMGVAIGTGTDVAIEAADVVLIRNDLLDVVASIHLSKRTVRRIRINLVLALIYNLVGIPIAAGVFMP-IGIVLQPWMGSAAMAASSVSVVLSSLQLKCYKKP 1379          
BLAST of CN188172 vs. ExPASy Swiss-Prot
Match: ATP7B_MOUSE (Copper-transporting ATPase 2 OS=Mus musculus GN=Atp7b PE=1 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 5.816e-22
Identity = 55/106 (51.89%), Postives = 73/106 (68.87%), Query Frame = -1
Query:  271 LVAADVGMAIGAGTDIAIEAADIVLMKSNLEDVITAIDLSRKTFSRIRLNYIWALGYNLLGIPIAAGALFPTTGFRLPPWIAGAAMAAXXXXXXXXXXXLKNYKRP 588
            L  ADVG+AIG GTD+AIEAAD+VL++++L DV+ +I LS++T  RIR+N + AL YN++GIPIAAG   P  G  L PW+  AAMAA           LK Y++P
Sbjct: 1272 LAQADVGIAIGTGTDVAIEAADVVLIRNDLLDVVASIHLSKRTVRRIRVNLVLALIYNMVGIPIAAGVFMP-IGIVLQPWMGSAAMAASSVSVVLSSLQLKCYRKP 1376          
BLAST of CN188172 vs. ExPASy Swiss-Prot
Match: COPA_ARCFU (Probable copper-exporting P-type ATPase A OS=Archaeoglobus fulgidus GN=copA PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.433e-20
Identity = 53/127 (41.73%), Postives = 76/127 (59.84%), Query Frame = -1
Query:  208 LVAADVGMAIGAGTDIAIEAADIVLMKSNLEDVITAIDLSRKTFSRIRLNYIWALGYNLLGIPIAAGALFPTTGFRLPPWIAGAAMAAXXXXXXXXXXXLKNYKRPKKLNNLEIREICWKNSKSICY 588
            L  AD+G+A+G+G+D+A+E+ DIVL++ +L DV+ AI LSRKT S+I+ N  WAL YN++ IP AAG L+P  G    P  AG AMA            L+NY  P +     + +I  + S   C+
Sbjct:  626 LAQADLGIAVGSGSDVAVESGDIVLIRDDLRDVVAAIQLSRKTMSKIKQNIFWALIYNVILIPAAAGLLYPIFGVVFRPEFAGLAMAMSSVSVVANSLLLRNYVPPIRRGGDSVEKIVLELSGLSCH 752          
The following BLAST results are available for this feature:
BLAST of CN188172 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 69
Match NameE-valueIdentityDescription
AHM7_ARATH6.171e-4884.62Putative copper-transporting ATPase 3 OS=Arabidops... [more]
AHM5_ARATH3.635e-3261.40Copper-transporting ATPase RAN1 OS=Arabidopsis tha... [more]
ATP7A_RAT1.252e-2453.04Copper-transporting ATPase 1 OS=Rattus norvegicus ... [more]
ATP7A_MOUSE3.643e-2454.72Copper-transporting ATPase 1 OS=Mus musculus GN=At... [more]
ATP7A_HUMAN1.060e-2353.77Copper-transporting ATPase 1 OS=Homo sapiens GN=AT... [more]
ATP7B_SHEEP1.531e-2253.77Copper-transporting ATPase 2 OS=Ovis aries GN=ATP7... [more]
ATP7A_CRIGR1.531e-2249.57Copper-transporting ATPase 1 (Fragment) OS=Cricetu... [more]
ATP7B_HUMAN2.611e-2252.83Copper-transporting ATPase 2 OS=Homo sapiens GN=AT... [more]
ATP7B_MOUSE5.816e-2251.89Copper-transporting ATPase 2 OS=Mus musculus GN=At... [more]
COPA_ARCFU1.433e-2041.73Probable copper-exporting P-type ATPase A OS=Archa... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005J21_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005J21, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188172 ID=CN188172; Name=CN188172; organism=Citrus sinensis; type=EST; length=588bp
TTTTACTATTTTTCCCTTATGGGATAATCTCATTTTCTTTCAAATTTCCA
TTTTCAAGGGTACACTTTGAGAGACAATTTCTCATTCACCCAAGCACCAT
TTTGAGTAAATAAATATACATTTTCGAAGTATTCACGGAGTAGAACCCGA
ACTTCACAATATTTCCCACTTTCGCTAAGTGGGACCCACTCAAAATGTGC
CCTCAAAATAACATATTGATTTGCTATTTTTCCAACAAATTTCACGAATC
TCAAGATTATTCAGCTTCTTAGGCCTCTTGTAATTCTTCAGCAACAGAGA
GCAGCAAACAACACTAACTGAAGAGGCTGCCATTGCAGCTCCAGCAATCC
ATGGAGGTAAACGGAATCCAGTAGTCGGGAAAAGGGCTCCCGCAGCAATT
GGTATGCCTAAAAGGTTATAACCCAGAGCCCAAATGTAGTTCAGACGAAT
ACGCGAAAAAGTTTTCCTCGACAAGTCTATAGCAGTTATCACATCCTCCA
AATTACTCTTCATCAGGACAATATCAGCTGCCTCTATTGCAATGTCCGTG
CCTGCACCAATTGCCATTCCAACATCTGCTGCTACAAG
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