CN188171

Overview
NameCN188171
Unique NameCN188171
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length671
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1550 contig Csv1_Contig1550:1095..1765. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN188171 vs. ExPASy Swiss-Prot
Match: DCE_PETHY (Glutamate decarboxylase OS=Petunia hybrida GN=GAD PE=1 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 5.846e-59
Identity = 113/179 (63.13%), Postives = 140/179 (78.21%), Query Frame = 1
Query:    4 LNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEIESLPSRVSTKTAHVIPMVNETQGDKPLKKSVRETQEEVTRHWKRFVKGRR 540
            LNFSKGSSQ+IAQYYQ IRLG+EGYKN+MENC  NA  LREGLEKTGRF I+SK++GVPLVAFSLKD+  H  FEISE LR+FGWIVPAYTMP NA+++ VLRVV+REDFSR+L ERL+  IE+VL E+++LP+RV+ K A V        G +  KK+  E Q E+   WK+FV+ ++
Sbjct:  316 LNFSKGSSQVIAQYYQLIRLGYEGYKNVMENCQENASVLREGLEKTGRFNIISKEIGVPLVAFSLKDNRQHNEFEISETLRRFGWIVPAYTMPPNAQHITVLRVVIREDFSRTLAERLVRDIEKVLHELDTLPARVNAKLA-VAEEQAAANGSEVHKKTDSEVQLEMITAWKKFVEEKK 493          
BLAST of CN188171 vs. ExPASy Swiss-Prot
Match: DCE_SOLLC (Glutamate decarboxylase OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 9.972e-59
Identity = 110/186 (59.14%), Postives = 143/186 (76.88%), Query Frame = 1
Query:    4 LNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEIESLPSRVSTKTAHV-IPMVNETQGD--KPLKKSVRETQEEVTRHWKRFVKGRRAGAC 552
            LNFSKGS QIIAQYYQ IRLGFEGYKN+M+NC+ NA+ L EG+ K GRF+I+SKDVGVP+VAFSL+DSS +TVFE+SE LR+FGWIVPAYTMP +AE++AVLRVV+REDFS SL ERL+S IE++L E+++ P R+ TK   V    V + +GD          ETQ+++ +HW++    + +G C
Sbjct:  317 LNFSKGSYQIIAQYYQLIRLGFEGYKNVMKNCLSNAKVLTEGITKMGRFDIVSKDVGVPVVAFSLRDSSKYTVFEVSEHLRRFGWIVPAYTMPPDAEHIAVLRVVIREDFSHSLAERLVSDIEKILSELDTQPPRLPTKAVRVTAEEVRDDKGDGLHHFHMDTVETQKDIIKHWRKIAGKKTSGVC 502          
BLAST of CN188171 vs. ExPASy Swiss-Prot
Match: DCE1_ARATH (Glutamate decarboxylase 1 OS=Arabidopsis thaliana GN=GAD1 PE=1 SV=2)

HSP 1 Score: 216.853 bits (551), Expect = 7.902e-56
Identity = 113/188 (60.11%), Postives = 142/188 (75.53%), Query Frame = 1
Query:    4 LNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEIESLPSRVSTKTAHVIPMVNETQGDK---PLKKSVRETQEEVTRHWKRFVKGRR--AGAC 552
            LNFSKGSSQ+IAQYYQ IRLG EGY+N+MENC  N   LREGLEKT RF I+SKD GVPLVAFSLKDSS HT FEIS+ LR++GWIVPAYTMP NA+++ VLRVV+REDFSR+L ERL+  IE+V++E++ LPSRV  K + +    +E+  D     +KKS  + Q ++   WK+FV  R+  +G C
Sbjct:  316 LNFSKGSSQVIAQYYQLIRLGHEGYRNVMENCRENMIVLREGLEKTERFNIVSKDEGVPLVAFSLKDSSCHTEFEISDMLRRYGWIVPAYTMPPNAQHITVLRVVIREDFSRTLAERLVIDIEKVMRELDELPSRVIHKIS-LGQEKSESNSDNLMVTVKKSDIDKQRDIITGWKKFVADRKKTSGIC 502          
BLAST of CN188171 vs. ExPASy Swiss-Prot
Match: DCE2_ARATH (Glutamate decarboxylase 2 OS=Arabidopsis thaliana GN=GAD2 PE=1 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 1.348e-55
Identity = 113/185 (61.08%), Postives = 141/185 (76.22%), Query Frame = 1
Query:    4 LNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVPLVAFSLKDSSAHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEIESLPSRVSTKTAHVIPMVNETQGDKPLKKSVRETQEEVTRHWKRFVKGRRA--GAC 552
            LNFSKGSSQIIAQYYQ IRLGFEGYKN+MENC+ N   L+EG+EKT RF I+SKD GVP+VAFSLKD S H  FEISE LR+FGWIVPAYTMPA+A+++ VLRVV+REDFSR+L ERL++ I +VL E+++LPS++S K    I  + E   +K ++K   E   EV   W++FVK R+   G C
Sbjct:  315 LNFSKGSSQIIAQYYQLIRLGFEGYKNVMENCIENMVVLKEGIEKTERFNIVSKDQGVPVVAFSLKDHSFHNEFEISEMLRRFGWIVPAYTMPADAQHITVLRVVIREDFSRTLAERLVADISKVLHELDTLPSKISKKMG--IEGIAENVKEKKMEK---EILMEVIVGWRKFVKERKKMNGVC 494          
BLAST of CN188171 vs. ExPASy Swiss-Prot
Match: DCE_LACLM (Glutamate decarboxylase OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=gadB PE=1 SV=2)

HSP 1 Score: 103.99 bits (258), Expect = 7.465e-22
Identity = 50/128 (39.06%), Postives = 79/128 (61.72%), Query Frame = 1
Query:    4 LNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVPLVAFSLKDSS--AHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVL 381
            +NFS  +SQ+I QYY F+R GF+GYK I E     A  L E +EKTG FEI++    +P+V + LK++S     ++++++ L   GW VPAY +P N EN  + R+V+R DF  ++    +  ++E +
Sbjct:  316 INFSHSASQLIGQYYNFVRYGFDGYKAIHERTHKVAMYLAEEIEKTGMFEIMNDGAQLPIVCYKLKENSNRGWNLYDLADRLLMKGWQVPAYPLPKNLENEIIQRLVIRADFGMNMAFNYVQDMQEAI 443          
BLAST of CN188171 vs. ExPASy Swiss-Prot
Match: DCE_LACLA (Glutamate decarboxylase OS=Lactococcus lactis subsp. lactis GN=gadB PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.837e-21
Identity = 49/131 (37.40%), Postives = 80/131 (61.07%), Query Frame = 1
Query:    4 LNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVPLVAFSLKDSS--AHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEI 390
            +NFS  +SQ+I QYY F+R GF+GYK I E     A  L + +EKTG FEI++    +P+V + LK+ S     ++++++ L   GW VPAY +P N EN  + R+V+R DF  ++    +  ++E ++ +
Sbjct:  316 INFSHSASQLIGQYYNFVRYGFDGYKAIHERTHKVAMFLAKEIEKTGMFEIMNDGSQLPIVCYKLKEDSNRGWNLYDLADRLLMKGWQVPAYPLPKNLENEIIQRLVIRADFGMNMAFNYVQDMQEAIEAL 446          
BLAST of CN188171 vs. ExPASy Swiss-Prot
Match: DCEB_LISIN (Glutamate decarboxylase beta OS=Listeria innocua GN=gadB PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.838e-21
Identity = 48/133 (36.09%), Postives = 80/133 (60.15%), Query Frame = 1
Query:    4 LNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVPLVAFSLKDSS--AHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEIES 396
            +NFS+ +S II QYY F+R GFEGY+ I +     A+ L   +E+TG F+I +    +P+V + LKD +    T++++++ L+  GW VPAY +P N EN+ + R V R D   ++ E  I   +  ++E+ +
Sbjct:  314 INFSRSASHIIGQYYNFLRYGFEGYRTIHQKTSDVAQYLAHAVEQTGYFDIYNDGSHLPIVCYKLKDDANVKWTLYDLADRLQMRGWQVPAYPLPKNLENIIIQRYVCRADLGFNMAEEFIQDFQASIQELNN 446          
BLAST of CN188171 vs. ExPASy Swiss-Prot
Match: DCEB_LISMO (Glutamate decarboxylase beta OS=Listeria monocytogenes GN=gadB PE=3 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 1.839e-20
Identity = 47/133 (35.34%), Postives = 80/133 (60.15%), Query Frame = 1
Query:    4 LNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVPLVAFSLKDSS--AHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEIES 396
            +NFS+ +S II QYY F+R GFEGY+ I +     A+ L   +E+TG F+I +    +P+V + LKD +    T++++++ L+  GW VPAY +P + EN+ + R V R D   ++ E  I   +  ++E+ +
Sbjct:  314 INFSRSASHIIGQYYNFLRYGFEGYRTIHQKTSDVAQYLAHAVEQTGYFDIFNDGSHLPIVCYKLKDDANVNWTLYDLADRLQMRGWQVPAYPLPKSLENIIIQRYVCRADLGFNMAEEFIQDFQASIQELNN 446          
BLAST of CN188171 vs. ExPASy Swiss-Prot
Match: DCEA_LISMO (Glutamate decarboxylase alpha OS=Listeria monocytogenes GN=gadA PE=3 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 3.136e-20
Identity = 51/147 (34.69%), Postives = 84/147 (57.14%), Query Frame = 1
Query:    4 LNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVPLVAFSLKDSS--AHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEIES---LPSRVSTKTAH 429
            +NFS+ +SQII QYY F+R G+EGY+ I       A  L + + +TG FEI +    +P+V + LKD +  A T++++++ L+  GW VPAY +P    N  + R V R D  +++V    + + E ++E+ +   L   V+T   H
Sbjct:  312 INFSRSASQIIGQYYNFLRFGYEGYRQIHMRTRDGALQLSQAVAETGLFEIYNDGANLPIVCYKLKDDANVAWTLYDLADRLQMKGWQVPAYPLPKEMGNTIIQRYVCRGDLGQNMVTAFKNDLSESIEELNNAHILYHDVNTSKTH 458          
BLAST of CN188171 vs. ExPASy Swiss-Prot
Match: DCEC_LISIN (Probable glutamate decarboxylase gamma OS=Listeria innocua GN=lin2528 PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.096e-20
Identity = 49/132 (37.12%), Postives = 77/132 (58.33%), Query Frame = 1
Query:    4 LNFSKGSSQIIAQYYQFIRLGFEGYKNIMENCMGNARALREGLEKTGRFEILSKDVGVPLVAFSLKD--SSAHTVFEISEGLRKFGWIVPAYTMPANAENVAVLRVVVREDFSRSLVERLISHIEEVLKEIE 393
            +NFS+ +SQII QYY F+R GFEGY+ I E     A  L + +EK+G FEI++    +P+V + LKD      T++++++ L   GW VPAY +PA+  +  + R V R D   ++ E   +   + L  +E
Sbjct:  317 INFSRSASQIIGQYYNFLRYGFEGYREIHEKTKKTALYLSKTVEKSGYFEIINDGSNLPIVCYKLKDDLDVEWTLYDLADQLLMKGWQVPAYPLPADLSDTIIQRFVCRADLGYNVAEEFAADFADALHNLE 448          
The following BLAST results are available for this feature:
BLAST of CN188171 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
DCE_PETHY5.846e-5963.13Glutamate decarboxylase OS=Petunia hybrida GN=GAD ... [more]
DCE_SOLLC9.972e-5959.14Glutamate decarboxylase OS=Solanum lycopersicum PE... [more]
DCE1_ARATH7.902e-5660.11Glutamate decarboxylase 1 OS=Arabidopsis thaliana ... [more]
DCE2_ARATH1.348e-5561.08Glutamate decarboxylase 2 OS=Arabidopsis thaliana ... [more]
DCE_LACLM7.465e-2239.06Glutamate decarboxylase OS=Lactococcus lactis subs... [more]
DCE_LACLA2.837e-2137.40Glutamate decarboxylase OS=Lactococcus lactis subs... [more]
DCEB_LISIN4.838e-2136.09Glutamate decarboxylase beta OS=Listeria innocua G... [more]
DCEB_LISMO1.839e-2035.34Glutamate decarboxylase beta OS=Listeria monocytog... [more]
DCEA_LISMO3.136e-2034.69Glutamate decarboxylase alpha OS=Listeria monocyto... [more]
DCEC_LISIN4.096e-2037.12Probable glutamate decarboxylase gamma OS=Listeria... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0005J20_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005J20, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188171 ID=CN188171; Name=CN188171; organism=Citrus sinensis; type=EST; length=671bp
ATGCTCAACTTCTCAAAAGGCTCCAGTCAAATAATTGCTCAATATTATCA
GTTTATACGGCTTGGCTTTGAGGGTTACAAGAACATTATGGAAAATTGCA
TGGGGAATGCTAGAGCGCTAAGAGAAGGATTAGAGAAAACAGGGCGCTTT
GAAATTCTCTCCAAGGATGTTGGCGTACCCTTAGTAGCCTTTTCTTTGAA
GGACAGCAGCGCACACACCGTGTTTGAGATATCCGAGGGTTTGAGAAAGT
TTGGGTGGATAGTTCCGGCCTATACAATGCCTGCTAATGCTGAAAATGTG
GCGGTTCTTCGGGTGGTTGTCAGGGAGGATTTCAGCCGTAGCTTGGTGGA
AAGACTCATCTCACACATCGAGGAAGTTTTGAAGGAAATTGAATCGCTTC
CAAGTCGTGTATCCACAAAAACTGCCCATGTCATACCCATGGTCAACGAA
ACTCAGGGTGATAAGCCACTTAAGAAGAGTGTGAGGGAGACTCAGGAGGA
AGTCACCAGGCACTGGAAGAGGTTCGTGAAAGGCCGGAGAGCTGGAGCAT
GCTGAGGTTCCAAACATAAGATGAGACAAGATTTGTATGCTTGTTTGAAT
ATTAAAGCTATTGCTTCTTCCTGTTTTCTGTATATTCGTACTTGAAGGTG
TGTTTACTTTATGTGATTGTT
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