EY666009

Overview
NameEY666009
Unique NameEY666009
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length920
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY666009 vs. ExPASy Swiss-Prot
Match: RGA4_SOLBU (Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1)

HSP 1 Score: 56.9954 bits (136), Expect = 6.513e-13
Identity = 30/85 (35.29%), Postives = 55/85 (64.71%), Query Frame = 2
Query:   62 MVDAIVSSLLEQLISVAADEVKQQVRLVTGVDEEVKKLTINLEAIRAVLEDAKKRQMQHDKAVTLWLDQLKDSSDDMEDVLEDCK 316
            M +A +  LLE L S   D++     L+ G ++E +KL+     I+AVL+DA+++Q++ DKA+  WL +L  ++ +++D+L +CK
Sbjct:    1 MAEAFLQVLLENLTSFIGDKLV----LIFGFEKECEKLSSVFSTIQAVLQDAQEKQLK-DKAIENWLQKLNSAAYEVDDILGECK 80          

HSP 2 Score: 38.1206 bits (87), Expect = 6.513e-13
Identity = 20/62 (32.26%), Postives = 33/62 (53.23%), Query Frame = 3
Query:  435 LSLRHHIAVKIREISEKLDEIAARKDTFKFVENVSNSVKRPQRERTLSLIDEGKVLRRDE*E 620
            ++ RH I  +++EI EKLD I+  +  F F+E ++          T  ++ E KV  RD+ E
Sbjct:   99 INFRHKIGRRMKEIMEKLDAISEERRKFHFLEKITERQAAAATRETGFVLTEPKVYGRDKEE 160          
The following BLAST results are available for this feature:
BLAST of EY666009 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
RGA4_SOLBU6.513e-1335.29Putative disease resistance protein RGA4 OS=Solanu... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-102-011-F11-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY666009 ID=EY666009; Name=EY666009; organism=Citrus sinensis; type=EST; length=920bp
TCCGACCACGCGTCCGCGGACGCGTGGGTAACTCTTCGGAATTCTCGTCT
TCTGGGTCAGAATGGTTGATGCGATCGTTTCCTCTCTCCTGGAGCAGCTG
ATCTCTGTTGCGGCTGATGAAGTGAAACAACAGGTGAGGCTTGTGACTGG
TGTCGACGAAGAAGTGAAAAAGCTTACCATCAATCTTGAAGCCATTCGAG
CTGTGCTGGAAGATGCAAAGAAAAGGCAAATGCAGCACGACAAAGCTGTT
ACTCTTTGGCTGGATCAGCTCAAAGACTCATCTGACGACATGGAAGATGT
GTTGGAGGATTGCAAGGCTCAAATTGCAGATTGAGGCCGTTGATGATGAC
AATGCTCTTGCTCTTGCTCCTCATAAGAAGAAGGTACGTTCCTTCTTTTG
TGCTGTATCAAACTGCTTTGGTAGTTTCAAACAACTCAGTCTTCGTCATC
ATATTGCTGTCAAGATTAGAGAAATTAGTGAAAAGCTAGATGAAATTGCC
GCTCGAAAAGATACGTTTAAATTTGTTGAGAATGTGAGTAACAGTGTTAA
GAGACCACAGCGAGAGCGAACCCTCTCCTTGATTGATGAGGGAAAGGTTT
TGCGGCGAGATGAATGAGAAAAATGACATTCTACGAACGTTGCGTGGGTG
CACCGGAATGACCGACAAATGCGGCCCTCAGTGCCCCTTGAGCTAGTGGG
GGCGAGCCCGGCGTCGGTCAGACCCCTCCTGGCGGGAATCGACCGTCAGC
GACGTACAAGCCGGACCGTGCGCCCGGCACGAGACGAGTGCCAGCGCGCC
GCCTCCGGTCCCCCGTCAGCGCCCAGCACCGAAGGCCGCAGACGGCCCCG
GGTCCGCCGCCCCCGGCGCATTCTGCCAGGAATCCGTGGCCGACGCGCGC
CGCGGCCCGCAGTGATCTAC
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