CN188158

Overview
NameCN188158
Unique NameCN188158
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length519
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11535 contig Csv1_Contig11535:198..716. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN188158 vs. ExPASy Swiss-Prot
Match: GSTXC_TOBAC (Probable glutathione S-transferase parC OS=Nicotiana tabacum GN=PARC PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.310e-15
Identity = 35/55 (63.64%), Postives = 42/55 (76.36%), Query Frame = 2 
Query:   11 FTYETCGKFNVEAECPKFIAWVKRCLQRETVAKALPDGKKVFEFVSAMRTNLGLE 175
            + YET G F+ EAECPKF+AW KRC+QRE+VAK+LPD  KV EFV  +R   GLE
Sbjct:  167 YAYETFGNFSTEAECPKFVAWAKRCMQRESVAKSLPDQPKVLEFVKVLRQKFGLE 221
[Close]
BLAST of CN188158 vs. ExPASy Swiss-Prot
Match: GSTX4_TOBAC (Probable glutathione S-transferase OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.310e-15
Identity = 35/55 (63.64%), Postives = 42/55 (76.36%), Query Frame = 2 
Query:   11 FTYETCGKFNVEAECPKFIAWVKRCLQRETVAKALPDGKKVFEFVSAMRTNLGLE 175
            + YET G F+ EAECPKF+AW KRC+QRE+VAK+LPD  KV EFV  +R   GLE
Sbjct:  167 YAYETFGNFSTEAECPKFVAWAKRCMQRESVAKSLPDQPKVLEFVKVLRQKFGLE 221
[Close]
BLAST of CN188158 vs. ExPASy Swiss-Prot
Match: GSTX3_SOYBN (Glutathione S-transferase 3 OS=Glycine max GN=GST3 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.550e-11
Identity = 28/52 (53.85%), Postives = 38/52 (73.08%), Query Frame = 2 
Query:   11 FTYETCGKFNVEAECPKFIAWVKRCLQRETVAKALPDGKKVFEFVSAMRTNL 166
            +TYET G F +E ECPK +AWVKRC++RETV+  LPD KKV+  +  ++  L
Sbjct:  165 YTYETYGNFKMEEECPKLMAWVKRCMERETVSNTLPDAKKVYGLIVELQKTL 216
[Close]
BLAST of CN188158 vs. ExPASy Swiss-Prot
Match: GSTXA_TOBAC (Probable glutathione S-transferase parA OS=Nicotiana tabacum GN=PARA PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 7.691e-11
Identity = 25/54 (46.30%), Postives = 39/54 (72.22%), Query Frame = 2 
Query:   11 FTYETCGKFNVEAECPKFIAWVKRCLQRETVAKALPDGKKVFEFVSAMRTNLGL 172
            ++YETC  F++EAECPK + W K C++ E+V+K+LP   K++ FV  ++  LGL
Sbjct:  166 YSYETCANFSIEAECPKLVVWAKTCMESESVSKSLPHPHKIYGFVLELKHKLGL 219
The following BLAST results are available for this feature:
BLAST of CN188158 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
GSTXC_TOBAC2.310e-1563.64Probable glutathione S-transferase parC OS=Nicotia... [more]
GSTX4_TOBAC2.310e-1563.64Probable glutathione S-transferase OS=Nicotiana ta... [more]
GSTX3_SOYBN1.550e-1153.85Glutathione S-transferase 3 OS=Glycine max GN=GST3... [more]
GSTXA_TOBAC7.691e-1146.30Probable glutathione S-transferase parA OS=Nicotia... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS05_0005J11_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0005J11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN188158 ID=CN188158; Name=CN188158; organism=Citrus sinensis; type=EST; length=519bp
AGTGTTGGTTTTCACGTATGAGACATGTGGAAAGTTCAACGTCGAGGCTG
AGTGCCCCAAGTTCATAGCTTGGGTGAAGAGATGCTTGCAGAGGGAGACT
GTTGCCAAGGCACTTCCTGATGGGAAGAAAGTGTTTGAATTTGTTTCAGC
GATGAGGACAAATTTAGGATTGGAGTAGAGAGAAAAAGGGACATACCTTG
GAGCTGAGAATAAGTCAAGCAGCGCAATCGTGCTGCCTGCTTATTCTTTA
GGTGGTTGATGTTGGTTTGGCTTGTGATGGTTGTTTTCCTATTGTGTTTT
TGTATTCGGATTGTTGTATTTCCCTAGTAAAAATAAGCTCCAATAATCCA
ATAAAGGACAATTAATTTTGTCCCCTACTGTTGTTATCTTAGTGTATGGT
AATCACGAAGAGTGTGTTTAGTATATTGAATTGTATATTTTTATTGTATT
ATTTTAATATATGTGTATTATATTATGTTGTATTATAATAATATTGTATA
GTATTTGGTGTTAAAAAAA
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